Wall clock time and date at job start Wed Apr 1 2020 01:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38229 * 119.99885 * 2 1 4 4 C 1.38235 * 119.99816 * 180.02562 * 3 2 1 5 5 C 1.50708 * 120.00152 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00117 * 359.97438 * 4 3 2 7 7 C 1.38237 * 119.99955 * 0.02562 * 6 4 3 8 8 C 1.50700 * 120.00202 * 179.97438 * 7 6 4 9 9 C 1.50695 * 109.47147 * 89.99313 * 8 7 6 10 10 O 1.21279 * 120.00150 * 0.02562 * 9 8 7 11 11 N 1.34785 * 120.00082 * 179.97438 * 9 8 7 12 12 C 1.45169 * 116.72612 * 359.97438 * 11 9 8 13 13 C 1.52970 * 110.59368 * 208.04640 * 12 11 9 14 14 C 1.51485 * 108.34241 * 309.38905 * 13 12 11 15 15 C 1.52531 * 109.78978 * 67.45895 * 14 13 12 16 16 H 1.09010 * 111.11949 * 67.22442 * 15 14 13 17 17 C 1.54268 * 109.18560 * 189.36697 * 15 14 13 18 18 N 1.46887 * 106.41153 * 91.04497 * 17 15 14 19 19 C 1.36933 * 125.37186 * 198.13963 * 18 17 15 20 20 H 1.08003 * 120.00177 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00118 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99674 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99893 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47216 * 60.00150 * 23 21 19 25 25 H 1.48504 * 109.46726 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47135 * 299.99689 * 23 21 19 27 27 C 1.46941 * 109.18399 * 18.14559 * 18 17 15 28 28 C 1.44107 * 116.72952 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.04499 * 39.67199 * 28 11 9 30 30 C 1.38234 * 119.99758 * 0.24498 * 7 6 4 31 31 H 1.08991 * 109.47470 * 89.99871 * 1 2 3 32 32 H 1.08999 * 109.46644 * 210.00178 * 1 2 3 33 33 H 1.08997 * 109.46825 * 329.99665 * 1 2 3 34 34 H 1.07998 * 120.00464 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.46808 * 270.02170 * 5 4 3 36 36 H 1.09000 * 109.47086 * 30.01959 * 5 4 3 37 37 H 1.08996 * 109.46877 * 150.01973 * 5 4 3 38 38 H 1.08005 * 120.00316 * 179.97438 * 6 4 3 39 39 H 1.09004 * 109.46793 * 329.99502 * 8 7 6 40 40 H 1.08998 * 109.47428 * 209.99683 * 8 7 6 41 41 H 1.08997 * 109.25448 * 328.33100 * 12 11 9 42 42 H 1.08998 * 109.25441 * 87.79685 * 12 11 9 43 43 H 1.09000 * 109.75939 * 68.60451 * 13 12 11 44 44 H 1.09003 * 109.75162 * 189.30371 * 13 12 11 45 45 H 1.09004 * 108.30447 * 307.85430 * 14 13 12 46 46 H 1.08996 * 109.90128 * 188.04719 * 14 13 12 47 47 H 1.09002 * 110.07939 * 210.30238 * 17 15 14 48 48 H 1.09004 * 110.07682 * 331.79750 * 17 15 14 49 49 H 0.97000 * 120.00071 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.81716 * 239.59290 * 27 18 17 51 51 H 1.08999 * 109.83363 * 118.61488 * 27 18 17 52 52 H 1.08003 * 119.99987 * 179.71969 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0005 7 6 3.5805 -1.1972 -0.0005 8 6 4.3340 -2.5023 -0.0011 9 6 4.5858 -2.9376 1.4194 10 8 4.1919 -2.2555 2.3416 11 7 5.2480 -4.0855 1.6652 12 6 5.6859 -4.8470 0.5094 13 6 5.7681 -6.3369 0.8463 14 6 6.5759 -6.4941 2.1182 15 6 5.8074 -5.9012 3.2947 16 1 4.9100 -6.4814 3.5102 17 6 6.7297 -5.8535 4.5304 18 7 7.3877 -4.5404 4.5067 19 6 8.5238 -4.2106 5.1964 20 1 9.0091 -4.9460 5.8209 21 6 9.0517 -2.9309 5.0928 22 7 8.4599 -2.0345 4.3321 23 14 10.6019 -2.4812 6.0330 24 1 11.7154 -3.3645 5.6030 25 1 10.9570 -1.0664 5.7541 26 1 10.3659 -2.6551 7.4888 27 6 6.6332 -3.6381 3.6261 28 6 5.4493 -4.4342 3.0489 29 1 4.5487 -4.1893 3.6121 30 6 2.1982 -1.1972 -0.0057 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3632 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5139 34 1 1.6582 2.1324 0.0004 35 1 4.5150 2.8168 -1.0289 36 1 3.7454 3.2619 0.5131 37 1 5.2868 2.3718 0.5121 38 1 5.3518 -0.0001 -0.0014 39 1 5.2862 -2.3719 -0.5154 40 1 3.7447 -3.2619 -0.5148 41 1 4.9775 -4.7016 -0.3061 42 1 6.6693 -4.4946 0.1984 43 1 4.7659 -6.7345 1.0058 44 1 6.2515 -6.8731 0.0297 45 1 7.5190 -5.9621 1.9927 46 1 6.7720 -7.5499 2.3050 47 1 6.1408 -5.9606 5.4413 48 1 7.4752 -6.6466 4.4718 49 1 8.8286 -1.1402 4.2600 50 1 7.2748 -3.2900 2.8166 51 1 6.2628 -2.7874 4.1980 52 1 1.6582 -2.1325 -0.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050129880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:38 Heat of formation + Delta-G solvation = 6.563491 kcal Electronic energy + Delta-G solvation = -30865.951313 eV Core-core repulsion = 27023.271110 eV Total energy + Delta-G solvation = -3842.680203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.51069 -39.41848 -37.71310 -35.39826 -33.46724 -33.44649 -32.97207 -32.00383 -29.64516 -28.52970 -27.32089 -26.62970 -26.57480 -25.52653 -23.86802 -21.99524 -21.46145 -20.67802 -20.24933 -19.41013 -17.90639 -17.05934 -16.69445 -16.23737 -15.91482 -15.47543 -15.09636 -14.77103 -14.39902 -14.19690 -14.05431 -13.85165 -13.61937 -13.33290 -13.23209 -13.01097 -12.87573 -12.79160 -12.56914 -12.54366 -12.23622 -11.96298 -11.75678 -11.67418 -11.56376 -11.40357 -11.17068 -10.98728 -10.90184 -10.88416 -10.73404 -10.68678 -10.31938 -10.22377 -9.87202 -9.71411 -9.62728 -9.33855 -8.53416 -8.47006 -8.42359 -8.05396 -6.75465 -5.62750 -2.98268 1.44938 1.49748 3.06268 3.38627 3.44043 3.48018 3.49750 3.86038 4.55191 4.68748 4.75216 4.80030 4.83382 4.98253 5.02628 5.15692 5.19974 5.28530 5.31013 5.36278 5.38124 5.46123 5.50679 5.52166 5.56789 5.59865 5.61934 5.66634 5.67685 5.74761 5.80629 5.90715 5.92377 5.99987 6.07870 6.13276 6.20253 6.22665 6.27020 6.30707 6.46331 6.61889 6.64854 6.67671 6.70865 6.74732 6.91073 7.11300 7.13763 7.61162 7.67569 7.85395 7.97353 8.33970 8.66951 9.28510 9.89554 10.54086 11.47128 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.003485 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.929628 B = 8033.636076 C = 9866.251199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.087 4.087 3 C -0.125 4.125 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.106 4.106 7 C -0.052 4.052 8 C -0.102 4.102 9 C 0.504 3.496 10 O -0.520 6.520 11 N -0.588 5.588 12 C 0.111 3.889 13 C -0.128 4.128 14 C -0.109 4.109 15 C -0.100 4.100 16 H 0.071 0.929 17 C 0.142 3.858 18 N -0.603 5.603 19 C -0.232 4.232 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.179 3.821 28 C 0.127 3.873 29 H 0.076 0.924 30 C -0.112 4.112 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.016 0.984 48 H 0.038 0.962 49 H 0.252 0.748 50 H 0.047 0.953 51 H 0.049 0.951 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.614 -1.381 -15.031 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.082 4.082 5 C -0.170 4.170 6 C -0.124 4.124 7 C -0.052 4.052 8 C -0.142 4.142 9 C 0.290 3.710 10 O -0.395 6.395 11 N -0.321 5.321 12 C -0.013 4.013 13 C -0.166 4.166 14 C -0.146 4.146 15 C -0.120 4.120 16 H 0.090 0.910 17 C 0.015 3.985 18 N -0.330 5.330 19 C -0.360 4.360 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.563 5.563 23 Si 0.741 3.259 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.053 3.947 28 C 0.023 3.977 29 H 0.094 0.906 30 C -0.130 4.130 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.664 -0.853 -14.486 19.260 hybrid contribution 0.966 0.205 0.548 1.129 sum -11.698 -0.649 -13.939 18.209 Atomic orbital electron populations 1.20751 0.91448 1.02678 1.01891 1.19784 0.95767 0.93089 1.00037 1.20821 0.93497 0.97287 1.02662 1.19829 0.93751 0.95202 0.99390 1.20783 1.00256 0.94044 1.01965 1.20886 0.99767 0.91428 1.00349 1.19260 0.93401 0.93679 0.98903 1.20763 1.01918 0.95757 0.95721 1.20475 0.78386 0.81208 0.90911 1.90742 1.50223 1.52571 1.45985 1.46854 1.56387 1.22674 1.06210 1.21312 1.00064 0.92306 0.87588 1.21501 1.01115 0.95118 0.98842 1.21105 0.99560 1.00581 0.93401 1.21876 0.98375 0.94955 0.96784 0.91031 1.21359 0.93542 0.89997 0.93601 1.44249 1.28266 1.06719 1.53794 1.18970 0.99859 0.96091 1.21059 0.90512 1.24817 0.99227 0.96236 1.00014 1.69989 1.40364 1.04176 1.41788 0.86229 0.82885 0.77281 0.79518 1.21251 1.21640 1.21174 1.21411 0.88574 0.91081 0.93592 1.21264 1.01126 0.95096 0.80204 0.90574 1.20766 0.93330 0.97385 1.01555 0.91487 0.91658 0.91736 0.86509 0.91422 0.91721 0.91266 0.86140 0.88121 0.88379 0.90834 0.92013 0.91751 0.90707 0.90835 0.91861 0.96597 0.94372 0.93761 0.93505 0.93289 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.09 -1.08 5.88 -104.62 -0.62 -1.70 16 3 C -0.12 -1.56 9.36 -39.59 -0.37 -1.93 16 4 C -0.08 -1.10 5.88 -104.62 -0.62 -1.71 16 5 C -0.11 -1.24 10.01 36.01 0.36 -0.88 16 6 C -0.11 -1.56 9.36 -39.58 -0.37 -1.93 16 7 C -0.05 -0.75 4.37 -104.62 -0.46 -1.20 16 8 C -0.10 -1.33 4.27 -29.04 -0.12 -1.45 16 9 C 0.50 8.97 7.38 -10.98 -0.08 8.89 16 10 O -0.52 -11.71 15.28 5.56 0.08 -11.62 16 11 N -0.59 -10.05 2.74 -168.37 -0.46 -10.51 16 12 C 0.11 1.40 5.70 -4.77 -0.03 1.38 16 13 C -0.13 -1.48 6.07 -27.51 -0.17 -1.65 16 14 C -0.11 -1.61 4.92 -27.74 -0.14 -1.75 16 15 C -0.10 -1.75 3.14 -90.20 -0.28 -2.03 16 16 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 17 C 0.14 2.98 6.71 -3.17 -0.02 2.96 16 18 N -0.60 -15.87 3.39 -171.23 -0.58 -16.45 16 19 C -0.23 -6.61 10.26 -15.06 -0.15 -6.77 16 20 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 21 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 22 N -0.92 -28.03 10.27 55.49 0.57 -27.46 16 23 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.18 4.62 4.80 -3.33 -0.02 4.60 16 28 C 0.13 2.58 2.65 -68.74 -0.18 2.39 16 29 H 0.08 1.66 7.44 -51.93 -0.39 1.27 16 30 C -0.11 -1.50 9.36 -39.58 -0.37 -1.87 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.10 1.16 7.96 -51.93 -0.41 0.75 16 40 H 0.10 0.97 7.12 -51.93 -0.37 0.60 16 41 H 0.07 0.70 6.05 -51.93 -0.31 0.38 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.31 8.06 -51.93 -0.42 0.89 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.04 0.77 7.85 -51.93 -0.41 0.36 16 49 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 50 H 0.05 1.34 7.22 -51.93 -0.38 0.96 16 51 H 0.05 1.49 7.47 -51.93 -0.39 1.10 16 52 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -35.00 405.12 -11.62 -46.62 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.95 Total: 1.28 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -3.37 Total: -5.61 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.47 Total: -54.42 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.00 -11.62 -46.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050129880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.180 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds