Wall clock time and date at job start Wed Apr 1 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47297 * 2 1 4 4 C 1.38242 * 120.00204 * 89.99760 * 3 2 1 5 5 C 1.38231 * 120.00049 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00436 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00385 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46894 * 90.00506 * 7 6 5 9 9 O 1.21277 * 119.99906 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99619 * 180.02562 * 8 7 6 11 11 C 1.46785 * 119.52599 * 0.02562 * 10 8 7 12 12 C 1.53482 * 107.53984 * 231.97266 * 11 10 8 13 13 C 1.52729 * 108.38651 * 301.73130 * 12 11 10 14 14 C 1.53717 * 110.68746 * 64.12226 * 13 12 11 15 15 H 1.09004 * 112.30805 * 69.82178 * 14 13 12 16 16 C 1.55024 * 107.04484 * 193.95653 * 14 13 12 17 17 N 1.47105 * 107.12543 * 92.24990 * 16 14 13 18 18 C 1.36934 * 125.64598 * 180.15271 * 17 16 14 19 19 H 1.07995 * 120.00444 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99590 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00337 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99781 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47151 * 59.99978 * 22 20 18 24 24 H 1.48496 * 109.47335 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47300 * 300.00002 * 22 20 18 26 26 C 1.48763 * 108.83197 * 0.18135 * 17 16 14 27 27 C 1.45020 * 119.51574 * 179.97438 * 10 8 7 28 28 H 1.09002 * 109.86829 * 12.10830 * 27 10 8 29 29 C 1.38240 * 119.99831 * 0.25659 * 6 5 4 30 30 C 1.38239 * 119.99903 * 359.46795 * 29 6 5 31 31 H 1.08996 * 109.47223 * 300.00190 * 1 2 3 32 32 H 1.09007 * 109.46528 * 60.00412 * 1 2 3 33 33 H 1.08996 * 109.47135 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47283 * 239.99423 * 2 1 3 35 35 H 1.09002 * 109.46821 * 120.00254 * 2 1 3 36 36 H 1.07996 * 119.99791 * 359.97438 * 4 3 2 37 37 H 1.08005 * 119.99691 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47286 * 330.00404 * 7 6 5 39 39 H 1.09000 * 109.47312 * 210.00460 * 7 6 5 40 40 H 1.09009 * 109.84610 * 351.47995 * 11 10 8 41 41 H 1.08998 * 109.84696 * 112.39484 * 11 10 8 42 42 H 1.09004 * 109.67939 * 61.44881 * 12 11 10 43 43 H 1.08999 * 109.68595 * 181.96955 * 12 11 10 44 44 H 1.09002 * 109.19385 * 184.20045 * 13 12 11 45 45 H 1.09000 * 109.19279 * 303.51773 * 13 12 11 46 46 H 1.09001 * 109.90723 * 211.61645 * 16 14 13 47 47 H 1.08999 * 109.91023 * 332.68915 * 16 14 13 48 48 H 0.96997 * 120.00049 * 179.97438 * 21 20 18 49 49 H 1.08992 * 110.48178 * 264.91381 * 26 17 16 50 50 H 1.09005 * 110.90919 * 142.03061 * 26 17 16 51 51 H 1.08000 * 120.00116 * 179.72611 * 29 6 5 52 52 H 1.08001 * 120.00435 * 180.29503 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9545 4.0272 0.0001 7 6 3.4569 5.4479 0.0001 8 6 4.9640 5.4478 0.0000 9 8 5.5703 4.3975 0.0004 10 7 5.6379 6.6150 0.0005 11 6 4.8935 7.8801 0.0016 12 6 5.4354 8.7367 -1.1508 13 6 6.9332 8.9430 -0.9347 14 6 7.6827 7.6033 -1.0130 15 1 7.7017 7.1983 -2.0249 16 6 9.1028 7.8429 -0.4392 17 7 9.0498 7.5231 0.9957 18 6 10.0993 7.6070 1.8712 19 1 11.0688 7.9309 1.5227 20 6 9.9170 7.2757 3.2069 21 7 8.7353 6.8814 3.6318 22 14 11.3488 7.3893 4.4012 23 1 11.8486 8.7871 4.4433 24 1 10.8963 6.9850 5.7565 25 1 12.4398 6.4869 3.9534 26 6 7.6684 7.0926 1.3410 27 6 7.0880 6.6028 0.0010 28 1 7.4500 5.5974 -0.2142 29 6 2.7186 3.3775 -1.1971 30 6 2.2627 2.0725 -1.1972 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.0823 1.5635 2.1325 37 1 2.9036 3.8848 2.1325 38 1 3.0936 5.9618 0.8901 39 1 3.0936 5.9618 -0.8899 40 1 3.8318 7.6849 -0.1499 41 1 5.0428 8.3965 0.9498 42 1 5.2683 8.2250 -2.0986 43 1 4.9290 9.7019 -1.1605 44 1 7.3176 9.6117 -1.7050 45 1 7.0952 9.3938 0.0444 46 1 9.8196 7.1909 -0.9384 47 1 9.3889 8.8852 -0.5797 48 1 8.6080 6.6496 4.5650 49 1 7.0903 7.9346 1.7213 50 1 7.6843 6.2808 2.0684 51 1 2.8945 3.8881 -2.1324 52 1 2.0829 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050152599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:25 Heat of formation + Delta-G solvation = 7.702307 kcal Electronic energy + Delta-G solvation = -30361.946590 eV Core-core repulsion = 26519.315770 eV Total energy + Delta-G solvation = -3842.630820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.38602 -39.38249 -37.79311 -35.22151 -34.67654 -32.85910 -31.89099 -31.32115 -30.88981 -29.32189 -27.87552 -26.65741 -25.47926 -23.98466 -23.22616 -22.72135 -21.99246 -20.92759 -20.20223 -19.69110 -17.96525 -17.04099 -16.87327 -16.26594 -15.87135 -15.44542 -14.97826 -14.84941 -14.78715 -14.26448 -13.97777 -13.84888 -13.79196 -13.66531 -13.38390 -13.24771 -12.99011 -12.81193 -12.47204 -12.23997 -12.11814 -12.00413 -11.79524 -11.76306 -11.52778 -11.31616 -11.10010 -11.05532 -10.86337 -10.85047 -10.80799 -10.65406 -10.30264 -10.23264 -9.87591 -9.71674 -9.63612 -9.39084 -8.85279 -8.62597 -8.46856 -8.07926 -6.81558 -5.63025 -3.04598 1.33903 1.47326 2.97289 3.32412 3.42591 3.46631 3.48026 3.82480 4.51387 4.59412 4.71570 4.76831 4.79231 4.94688 5.00341 5.02526 5.10091 5.17351 5.18050 5.27629 5.36745 5.37998 5.41901 5.49171 5.52773 5.55545 5.59763 5.65054 5.68685 5.70085 5.80568 5.91634 5.94270 5.96919 6.08527 6.09422 6.11041 6.12145 6.24652 6.31280 6.43794 6.44390 6.61968 6.64557 6.66455 6.71316 6.93118 7.00820 7.04725 7.44973 7.63215 7.81179 7.90336 8.33675 8.57965 9.21327 9.83591 10.48041 11.41347 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.002763 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.858595 B =10133.252793 C =11595.558156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.116 4.116 5 C -0.100 4.100 6 C -0.064 4.064 7 C -0.102 4.102 8 C 0.511 3.489 9 O -0.532 6.532 10 N -0.590 5.590 11 C 0.104 3.896 12 C -0.131 4.131 13 C -0.110 4.110 14 C -0.108 4.108 15 H 0.076 0.924 16 C 0.141 3.859 17 N -0.604 5.604 18 C -0.223 4.223 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.159 3.841 27 C 0.116 3.884 28 H 0.095 0.905 29 C -0.103 4.103 30 C -0.118 4.118 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.022 0.978 47 H 0.026 0.974 48 H 0.252 0.748 49 H 0.016 0.984 50 H 0.105 0.895 51 H 0.118 0.882 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.467 -3.989 -10.339 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.118 4.118 6 C -0.065 4.065 7 C -0.142 4.142 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.322 5.322 11 C -0.019 4.019 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.128 4.128 15 H 0.094 0.906 16 C 0.015 3.985 17 N -0.330 5.330 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.033 3.967 27 C 0.011 3.989 28 H 0.113 0.887 29 C -0.121 4.121 30 C -0.136 4.136 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.040 0.960 47 H 0.044 0.956 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.123 0.877 51 H 0.136 0.864 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.075 -4.573 -10.101 21.205 hybrid contribution 0.857 0.328 0.647 1.123 sum -17.218 -4.245 -9.455 20.096 Atomic orbital electron populations 1.21743 0.94893 1.01481 1.02153 1.20527 0.95986 0.92916 1.02780 1.19841 0.99581 0.96026 0.93289 1.20947 1.00307 0.94769 0.97428 1.20994 0.98348 0.94897 0.97551 1.19296 0.98732 0.94878 0.93546 1.20727 0.93343 0.95325 1.04764 1.20439 0.89345 0.83706 0.76720 1.90718 1.70007 1.30921 1.49147 1.47431 1.06806 1.05410 1.72583 1.21844 0.95353 0.85097 0.99565 1.21880 0.97243 0.99557 0.98269 1.21623 0.93682 0.96865 1.02585 1.22576 0.96593 0.95439 0.98177 0.90603 1.21476 0.93069 0.97425 0.86555 1.44680 1.07378 1.78164 1.02826 1.19021 0.89143 1.38274 0.88725 0.90456 1.24793 0.97051 1.01758 0.97008 1.69808 1.20810 1.51349 1.14946 0.86156 0.81349 0.77696 0.80307 1.21262 1.21606 1.21148 1.22133 0.83479 0.99307 0.91759 1.22025 0.77709 1.00361 0.98792 0.88719 1.20921 0.99034 0.94897 0.97276 1.20908 1.00653 0.94742 0.97343 0.92572 0.92640 0.92585 0.91182 0.91111 0.86281 0.86104 0.88085 0.88320 0.90136 0.90775 0.91856 0.91096 0.92404 0.90823 0.96026 0.95571 0.93710 0.96622 0.87718 0.86421 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.08 -0.74 6.06 -27.89 -0.17 -0.91 16 3 C -0.09 -0.99 5.13 -104.62 -0.54 -1.53 16 4 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 5 C -0.10 -1.32 9.70 -39.59 -0.38 -1.70 16 6 C -0.06 -0.85 4.37 -104.63 -0.46 -1.30 16 7 C -0.10 -1.23 4.14 -29.03 -0.12 -1.35 16 8 C 0.51 8.66 7.65 -10.98 -0.08 8.57 16 9 O -0.53 -11.42 15.35 5.56 0.09 -11.33 16 10 N -0.59 -9.85 2.73 -165.23 -0.45 -10.30 16 11 C 0.10 1.33 6.07 -3.64 -0.02 1.31 16 12 C -0.13 -1.55 6.10 -26.62 -0.16 -1.71 16 13 C -0.11 -1.64 4.66 -26.50 -0.12 -1.76 16 14 C -0.11 -1.91 3.64 -88.46 -0.32 -2.23 16 15 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 16 C 0.14 2.97 6.62 -2.64 -0.02 2.96 16 17 N -0.60 -15.63 3.43 -169.02 -0.58 -16.21 16 18 C -0.22 -6.30 10.28 -15.06 -0.15 -6.46 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -27.35 10.10 55.49 0.56 -26.79 16 22 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.16 3.91 5.09 -2.25 -0.01 3.90 16 27 C 0.12 2.34 3.00 -67.47 -0.20 2.14 16 28 H 0.09 2.19 6.95 -51.93 -0.36 1.83 16 29 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 30 C -0.12 -1.36 9.70 -39.58 -0.38 -1.75 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 38 H 0.10 1.04 7.87 -51.93 -0.41 0.63 16 39 H 0.10 0.92 7.55 -51.93 -0.39 0.53 16 40 H 0.08 0.75 5.81 -51.92 -0.30 0.45 16 41 H 0.07 1.02 7.61 -51.93 -0.39 0.63 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.28 7.22 -51.93 -0.37 0.91 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.02 0.40 6.91 -51.93 -0.36 0.04 16 50 H 0.11 3.04 5.98 -51.93 -0.31 2.73 16 51 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 52 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -33.65 402.82 -11.75 -45.40 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.76 Total: 2.11 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -3.65 Total: -6.37 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.47 Total: -53.31 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.65 -11.75 -45.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050152599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.104 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds