Wall clock time and date at job start Wed Apr 1 2020 02:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47297 * 2 1 4 4 C 1.38242 * 120.00204 * 89.99760 * 3 2 1 5 5 C 1.38231 * 120.00049 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00436 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00385 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46894 * 90.00506 * 7 6 5 9 9 O 1.21277 * 119.99906 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99619 * 180.02562 * 8 7 6 11 11 C 1.46785 * 119.52599 * 0.02562 * 10 8 7 12 12 C 1.53482 * 107.53984 * 231.97266 * 11 10 8 13 13 C 1.52729 * 108.38651 * 301.73130 * 12 11 10 14 14 C 1.53717 * 110.68746 * 64.12226 * 13 12 11 15 15 H 1.09004 * 112.30805 * 69.82178 * 14 13 12 16 16 C 1.55024 * 107.04484 * 193.95653 * 14 13 12 17 17 N 1.47105 * 107.12543 * 92.24990 * 16 14 13 18 18 C 1.36934 * 125.64598 * 180.15271 * 17 16 14 19 19 H 1.07995 * 120.00444 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99590 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00337 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99781 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47151 * 59.99978 * 22 20 18 24 24 H 1.48496 * 109.47335 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47300 * 300.00002 * 22 20 18 26 26 C 1.48763 * 108.83197 * 0.18135 * 17 16 14 27 27 C 1.45020 * 119.51574 * 179.97438 * 10 8 7 28 28 H 1.09002 * 109.86829 * 12.10830 * 27 10 8 29 29 C 1.38240 * 119.99831 * 0.25659 * 6 5 4 30 30 C 1.38239 * 119.99903 * 359.46795 * 29 6 5 31 31 H 1.08996 * 109.47223 * 300.00190 * 1 2 3 32 32 H 1.09007 * 109.46528 * 60.00412 * 1 2 3 33 33 H 1.08996 * 109.47135 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47283 * 239.99423 * 2 1 3 35 35 H 1.09002 * 109.46821 * 120.00254 * 2 1 3 36 36 H 1.07996 * 119.99791 * 359.97438 * 4 3 2 37 37 H 1.08005 * 119.99691 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.47286 * 330.00404 * 7 6 5 39 39 H 1.09000 * 109.47312 * 210.00460 * 7 6 5 40 40 H 1.09009 * 109.84610 * 351.47995 * 11 10 8 41 41 H 1.08998 * 109.84696 * 112.39484 * 11 10 8 42 42 H 1.09004 * 109.67939 * 61.44881 * 12 11 10 43 43 H 1.08999 * 109.68595 * 181.96955 * 12 11 10 44 44 H 1.09002 * 109.19385 * 184.20045 * 13 12 11 45 45 H 1.09000 * 109.19279 * 303.51773 * 13 12 11 46 46 H 1.09001 * 109.90723 * 211.61645 * 16 14 13 47 47 H 1.08999 * 109.91023 * 332.68915 * 16 14 13 48 48 H 0.96997 * 120.00049 * 179.97438 * 21 20 18 49 49 H 1.08992 * 110.48178 * 264.91381 * 26 17 16 50 50 H 1.09005 * 110.90919 * 142.03061 * 26 17 16 51 51 H 1.08000 * 120.00116 * 179.72611 * 29 6 5 52 52 H 1.08001 * 120.00435 * 180.29503 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9545 4.0272 0.0001 7 6 3.4569 5.4479 0.0001 8 6 4.9640 5.4478 0.0000 9 8 5.5703 4.3975 0.0004 10 7 5.6379 6.6150 0.0005 11 6 4.8935 7.8801 0.0016 12 6 5.4354 8.7367 -1.1508 13 6 6.9332 8.9430 -0.9347 14 6 7.6827 7.6033 -1.0130 15 1 7.7017 7.1983 -2.0249 16 6 9.1028 7.8429 -0.4392 17 7 9.0498 7.5231 0.9957 18 6 10.0993 7.6070 1.8712 19 1 11.0688 7.9309 1.5227 20 6 9.9170 7.2757 3.2069 21 7 8.7353 6.8814 3.6318 22 14 11.3488 7.3893 4.4012 23 1 11.8486 8.7871 4.4433 24 1 10.8963 6.9850 5.7565 25 1 12.4398 6.4869 3.9534 26 6 7.6684 7.0926 1.3410 27 6 7.0880 6.6028 0.0010 28 1 7.4500 5.5974 -0.2142 29 6 2.7186 3.3775 -1.1971 30 6 2.2627 2.0725 -1.1972 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.0823 1.5635 2.1325 37 1 2.9036 3.8848 2.1325 38 1 3.0936 5.9618 0.8901 39 1 3.0936 5.9618 -0.8899 40 1 3.8318 7.6849 -0.1499 41 1 5.0428 8.3965 0.9498 42 1 5.2683 8.2250 -2.0986 43 1 4.9290 9.7019 -1.1605 44 1 7.3176 9.6117 -1.7050 45 1 7.0952 9.3938 0.0444 46 1 9.8196 7.1909 -0.9384 47 1 9.3889 8.8852 -0.5797 48 1 8.6080 6.6496 4.5650 49 1 7.0903 7.9346 1.7213 50 1 7.6843 6.2808 2.0684 51 1 2.8945 3.8881 -2.1324 52 1 2.0829 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050152599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:24 Heat of formation + Delta-G solvation = -10.441010 kcal Electronic energy + Delta-G solvation = -30362.733344 eV Core-core repulsion = 26519.315770 eV Total energy + Delta-G solvation = -3843.417574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.71139 -40.40660 -39.21981 -36.80402 -35.52514 -34.54241 -33.40995 -32.31409 -31.78708 -31.03687 -29.27196 -27.93293 -27.12371 -25.47579 -24.18742 -23.62592 -23.24790 -22.21781 -21.68310 -20.95630 -19.31637 -18.92979 -18.30906 -17.36131 -16.86514 -16.83609 -16.50545 -16.08076 -15.94464 -15.87091 -15.18092 -15.10116 -14.73135 -14.63575 -14.51706 -14.48102 -14.19503 -14.00586 -13.79805 -13.73784 -13.51514 -13.17684 -13.10984 -12.92366 -12.88214 -12.74173 -12.50681 -12.34080 -12.20094 -12.07195 -12.04582 -11.76066 -11.70239 -11.64110 -11.61531 -11.46577 -11.14141 -10.78823 -10.75303 -9.77277 -9.53776 -9.38682 -8.90601 -7.80476 -5.25179 0.41657 0.55168 1.42390 1.46664 1.52813 1.67203 2.06059 2.47544 2.87359 3.29806 3.59835 3.67233 3.69873 3.84067 3.89752 3.96852 4.01245 4.02488 4.09721 4.16169 4.21732 4.22430 4.45455 4.48379 4.51760 4.55911 4.57334 4.61282 4.62476 4.72529 4.75294 4.79056 4.85626 4.93478 4.96325 5.06769 5.09560 5.11110 5.18046 5.19238 5.24798 5.30068 5.39336 5.39900 5.47862 5.53610 5.54318 5.66073 5.70984 5.75233 5.80840 6.16039 6.21482 6.52992 7.03395 7.26362 7.72247 8.37250 9.21501 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.002763 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.858595 B =10133.252793 C =11595.558156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.122 4.122 6 C -0.084 4.084 7 C -0.089 4.089 8 C 0.504 3.496 9 O -0.587 6.587 10 N -0.591 5.591 11 C 0.096 3.904 12 C -0.121 4.121 13 C -0.107 4.107 14 C -0.093 4.093 15 H 0.100 0.900 16 C 0.134 3.866 17 N -0.626 5.626 18 C -0.239 4.239 19 H 0.083 0.917 20 C -0.070 4.070 21 N -0.950 5.950 22 Si 0.982 3.018 23 H -0.273 1.273 24 H -0.294 1.294 25 H -0.279 1.279 26 C 0.173 3.827 27 C 0.130 3.870 28 H 0.057 0.943 29 C -0.113 4.113 30 C -0.127 4.127 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.018 0.982 47 H 0.038 0.962 48 H 0.245 0.755 49 H 0.001 0.999 50 H 0.053 0.947 51 H 0.134 0.866 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.283 -2.953 -12.579 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.140 4.140 6 C -0.084 4.084 7 C -0.129 4.129 8 C 0.294 3.706 9 O -0.467 6.467 10 N -0.322 5.322 11 C -0.025 4.025 12 C -0.159 4.159 13 C -0.144 4.144 14 C -0.112 4.112 15 H 0.119 0.881 16 C 0.008 3.992 17 N -0.353 5.353 18 C -0.368 4.368 19 H 0.101 0.899 20 C -0.262 4.262 21 N -0.599 5.599 22 Si 0.810 3.190 23 H -0.199 1.199 24 H -0.221 1.221 25 H -0.205 1.205 26 C 0.047 3.953 27 C 0.024 3.976 28 H 0.075 0.925 29 C -0.131 4.131 30 C -0.145 4.145 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.036 0.964 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.019 0.981 50 H 0.071 0.929 51 H 0.152 0.848 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.910 -3.493 -12.378 23.703 hybrid contribution 1.456 -0.044 1.343 1.981 sum -18.454 -3.537 -11.034 21.791 Atomic orbital electron populations 1.21711 0.93679 1.02427 1.02026 1.20584 0.96971 0.91337 1.03298 1.20191 0.98820 0.97210 0.93009 1.21193 1.00516 0.94706 0.98501 1.21190 0.99265 0.95711 0.97839 1.19496 0.99416 0.95683 0.93825 1.20761 0.88965 0.95626 1.07500 1.21391 0.91396 0.82723 0.75081 1.90691 1.71546 1.32927 1.51569 1.47544 1.05296 1.07262 1.72097 1.22212 0.97406 0.83234 0.99641 1.21875 0.94568 1.01228 0.98231 1.21592 0.96167 0.94950 1.01732 1.22557 0.94242 0.96413 0.98024 0.88136 1.21707 0.95613 0.97715 0.84125 1.44977 1.07285 1.78380 1.04701 1.19441 0.90139 1.37715 0.89545 0.89886 1.25691 0.99676 1.02011 0.98847 1.70111 1.22766 1.52444 1.14594 0.85098 0.78240 0.78153 0.77525 1.19909 1.22063 1.20481 1.21716 0.83613 0.96782 0.93229 1.21431 0.80449 0.98783 0.96929 0.92507 1.21218 0.98769 0.95418 0.97662 1.21248 1.00175 0.94754 0.98314 0.92963 0.92502 0.91106 0.90339 0.90941 0.85217 0.86420 0.86120 0.84385 0.85641 0.92375 0.90044 0.87648 0.89912 0.93923 0.96368 0.94430 0.94548 0.98149 0.92870 0.84769 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 71.98 0.71 -1.12 16 2 C -0.08 -1.37 6.06 29.85 0.18 -1.19 16 3 C -0.09 -2.02 5.13 -19.87 -0.10 -2.12 16 4 C -0.13 -3.18 9.70 22.27 0.22 -2.97 16 5 C -0.12 -3.26 9.70 22.27 0.22 -3.04 16 6 C -0.08 -2.14 4.37 -19.87 -0.09 -2.23 16 7 C -0.09 -1.97 4.14 29.10 0.12 -1.85 16 8 C 0.50 16.99 7.65 87.66 0.67 17.67 16 9 O -0.59 -26.23 15.35 -3.02 -0.05 -26.27 16 10 N -0.59 -19.44 2.73 -795.05 -2.17 -21.61 16 11 C 0.10 2.19 6.07 86.49 0.53 2.72 16 12 C -0.12 -2.34 6.10 30.67 0.19 -2.15 16 13 C -0.11 -2.92 4.66 30.75 0.14 -2.78 16 14 C -0.09 -3.19 3.64 -9.40 -0.03 -3.23 16 15 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 16 C 0.13 5.68 6.62 86.96 0.58 6.26 16 17 N -0.63 -33.75 3.43 -688.66 -2.36 -36.11 16 18 C -0.24 -13.96 10.28 84.03 0.86 -13.09 16 19 H 0.08 4.60 7.83 -2.91 -0.02 4.57 16 20 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 21 N -0.95 -59.41 10.10 21.65 0.22 -59.19 16 22 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 C 0.17 9.01 5.09 86.29 0.44 9.45 16 27 C 0.13 5.44 3.00 46.08 0.14 5.58 16 28 H 0.06 2.79 6.95 -2.39 -0.02 2.78 16 29 C -0.11 -2.62 9.70 22.27 0.22 -2.40 16 30 C -0.13 -2.75 9.70 22.27 0.22 -2.53 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 35 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 36 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.12 2.19 7.87 -2.39 -0.02 2.18 16 39 H 0.14 1.94 7.55 -2.39 -0.02 1.93 16 40 H 0.13 1.74 5.81 -2.38 -0.01 1.73 16 41 H 0.06 1.54 7.61 -2.39 -0.02 1.52 16 42 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 45 H 0.04 1.44 7.22 -2.39 -0.02 1.43 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.04 1.52 7.75 -2.39 -0.02 1.50 16 48 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 49 H 0.00 0.03 6.91 -2.39 -0.02 0.02 16 50 H 0.05 3.33 5.98 -2.38 -0.01 3.32 16 51 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 52 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -80.09 402.82 4.22 -75.87 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.89 Total: 20.61 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.66 Total: -2.72 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -4.32 Total: -116.91 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -80.09 4.22 -75.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050152599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.429 kcal (2) G-P(sol) polarization free energy of solvation -80.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds