Wall clock time and date at job start Wed Apr 1 2020 01:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50687 * 1 3 3 C 1.38243 * 120.00150 * 2 1 4 4 C 1.38237 * 119.99812 * 179.76678 * 3 2 1 5 5 C 1.38234 * 120.00068 * 0.50899 * 4 3 2 6 6 C 1.38229 * 120.00100 * 359.73844 * 5 4 3 7 7 C 1.50703 * 120.00254 * 179.97438 * 6 5 4 8 8 C 1.38233 * 120.00067 * 0.02562 * 6 5 4 9 9 C 1.50706 * 120.00299 * 179.97438 * 8 6 5 10 10 C 1.50693 * 109.46980 * 270.02252 * 9 8 6 11 11 O 1.21286 * 120.00182 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00103 * 179.97438 * 10 9 8 13 13 C 1.47171 * 135.99744 * 359.62279 * 12 10 9 14 14 C 1.52669 * 87.95911 * 206.74168 * 13 12 10 15 15 C 1.47151 * 136.00114 * 179.97438 * 12 10 9 16 16 C 1.52549 * 113.91458 * 88.15726 * 14 13 12 17 17 C 1.53348 * 109.13158 * 190.30504 * 16 14 13 18 18 N 1.46883 * 108.75140 * 307.75783 * 17 16 14 19 19 C 1.36938 * 120.46807 * 235.65057 * 18 17 16 20 20 H 1.07999 * 119.99953 * 28.42873 * 19 18 17 21 21 C 1.38814 * 120.00238 * 208.43802 * 19 18 17 22 22 N 1.31616 * 119.99872 * 17.64851 * 21 19 18 23 23 Si 1.86797 * 119.99806 * 197.65283 * 21 19 18 24 24 H 1.48502 * 109.47517 * 89.99805 * 23 21 19 25 25 H 1.48501 * 109.47014 * 209.99806 * 23 21 19 26 26 H 1.48501 * 109.47182 * 329.99665 * 23 21 19 27 27 C 1.46896 * 119.07558 * 55.62111 * 18 17 16 28 28 C 1.52560 * 114.24546 * 220.75341 * 14 13 12 29 29 H 1.09000 * 109.47161 * 269.72864 * 1 2 3 30 30 H 1.09003 * 109.47290 * 149.72953 * 1 2 3 31 31 H 1.08998 * 109.47199 * 29.72916 * 1 2 3 32 32 H 1.07997 * 119.99649 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99454 * 180.22728 * 4 3 2 34 34 H 1.08002 * 119.99857 * 179.72698 * 5 4 3 35 35 H 1.09000 * 109.47065 * 270.02925 * 7 6 5 36 36 H 1.09002 * 109.46936 * 30.02588 * 7 6 5 37 37 H 1.08991 * 109.47394 * 150.02874 * 7 6 5 38 38 H 1.09006 * 109.46719 * 30.01820 * 9 8 6 39 39 H 1.08994 * 109.47451 * 150.01603 * 9 8 6 40 40 H 1.08995 * 113.48641 * 321.43909 * 13 12 10 41 41 H 1.09000 * 113.48450 * 91.94288 * 13 12 10 42 42 H 1.09008 * 113.49017 * 268.05590 * 15 12 10 43 43 H 1.09000 * 113.49173 * 38.56439 * 15 12 10 44 44 H 1.08999 * 109.53137 * 310.20277 * 16 14 13 45 45 H 1.09002 * 109.52954 * 70.40694 * 16 14 13 46 46 H 1.09003 * 109.59129 * 187.98135 * 17 16 14 47 47 H 1.08995 * 109.59197 * 67.53792 * 17 16 14 48 48 H 0.96999 * 119.99806 * 180.02562 * 22 21 19 49 49 H 1.08992 * 109.59407 * 184.58983 * 27 18 17 50 50 H 1.08999 * 109.58983 * 64.14608 * 27 18 17 51 51 H 1.08997 * 109.52738 * 289.74187 * 28 14 13 52 52 H 1.08995 * 109.52793 * 49.95153 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 0.0049 5 6 4.2716 0.0000 -0.0009 6 6 3.5805 -1.1971 -0.0061 7 6 4.3339 -2.5022 -0.0129 8 6 2.1981 -1.1971 -0.0060 9 6 1.4445 -2.5022 -0.0122 10 6 1.1938 -2.9307 -1.4350 11 8 1.5878 -2.2437 -2.3537 12 7 0.5317 -4.0773 -1.6869 13 6 -0.0760 -5.1479 -0.8803 14 6 0.1606 -6.0930 -2.0557 15 6 0.1049 -4.8112 -2.8888 16 6 1.5290 -6.7671 -2.0413 17 6 1.7527 -7.4790 -3.3810 18 7 0.6016 -8.3507 -3.6504 19 6 0.7831 -9.6872 -3.8873 20 1 1.6272 -10.2027 -3.4536 21 6 -0.1178 -10.3794 -4.6850 22 7 -0.9287 -9.7209 -5.4857 23 14 -0.1791 -12.2452 -4.6219 24 1 -1.1506 -12.6738 -3.5836 25 1 -0.6034 -12.7716 -5.9441 26 1 1.1678 -12.7738 -4.2877 27 6 -0.7473 -7.7690 -3.6616 28 6 -0.9890 -7.0594 -2.3238 29 1 -0.3633 -0.0049 1.0276 30 1 -0.3634 -0.8876 -0.5180 31 1 -0.3633 0.8924 -0.5096 32 1 1.6581 2.1325 -0.0004 33 1 4.1204 2.1325 0.0086 34 1 5.3516 0.0000 -0.0015 35 1 4.5152 -2.8117 -1.0422 36 1 5.2866 -2.3745 0.5012 37 1 3.7451 -3.2644 0.4972 38 1 2.0336 -3.2643 0.4983 39 1 0.4921 -2.3743 0.5020 40 1 0.5033 -5.4060 0.0062 41 1 -1.1309 -4.9817 -0.6619 42 1 -0.9005 -4.5527 -3.2215 43 1 0.8366 -4.7855 -3.6963 44 1 2.3042 -6.0151 -1.8945 45 1 1.5681 -7.4951 -1.2309 46 1 2.6612 -8.0791 -3.3289 47 1 1.8455 -6.7399 -4.1766 48 1 -1.5584 -10.2046 -6.0428 49 1 -1.4853 -8.5599 -3.7945 50 1 -0.8283 -7.0498 -4.4767 51 1 -1.0385 -7.7977 -1.5234 52 1 -1.9270 -6.5062 -2.3690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050534271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:44 Heat of formation + Delta-G solvation = 39.625184 kcal Electronic energy + Delta-G solvation = -30406.003758 eV Core-core repulsion = 26564.757217 eV Total energy + Delta-G solvation = -3841.246541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.88992 -39.96366 -38.05004 -35.89236 -33.74264 -33.46838 -32.48026 -30.73882 -29.89433 -29.10644 -27.43338 -26.80039 -26.47146 -25.60218 -24.12066 -22.40828 -21.43745 -20.84707 -20.77487 -19.01660 -18.02717 -17.03859 -16.59899 -16.42240 -16.22776 -15.54193 -15.38451 -14.87497 -14.64784 -14.16891 -14.01819 -13.84465 -13.56672 -13.43012 -13.36990 -13.09850 -13.07752 -12.99292 -12.85516 -12.61503 -12.50933 -12.24100 -11.89957 -11.80535 -11.64896 -11.53748 -11.43638 -11.09028 -11.04303 -10.97948 -10.75980 -10.48634 -10.32092 -10.10388 -9.90184 -9.81116 -9.63483 -9.38261 -8.69621 -8.64698 -8.54195 -8.46996 -6.68118 -5.80772 -3.23533 1.21327 1.27150 2.71094 2.94444 3.36372 3.43794 3.44775 3.62263 4.46209 4.47574 4.51300 4.61413 4.64253 4.75684 4.81773 4.91940 5.07703 5.12652 5.18103 5.23367 5.28619 5.36692 5.40165 5.47117 5.48198 5.50360 5.53071 5.57702 5.58746 5.64868 5.67176 5.73796 5.84970 5.94798 6.01542 6.05593 6.08381 6.09637 6.25318 6.36405 6.41308 6.43491 6.54316 6.55369 6.59979 6.64091 6.79874 6.91171 6.94406 7.31152 7.62783 7.78353 7.87594 8.26154 8.44073 9.19872 9.83149 10.39552 11.27362 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.002285 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.575430 B =12249.646286 C =12755.712713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.068 4.068 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.127 4.127 6 C -0.066 4.066 7 C -0.119 4.119 8 C -0.065 4.065 9 C -0.101 4.101 10 C 0.542 3.458 11 O -0.535 6.535 12 N -0.645 5.645 13 C 0.100 3.900 14 C -0.075 4.075 15 C 0.114 3.886 16 C -0.105 4.105 17 C 0.147 3.853 18 N -0.590 5.590 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.171 3.829 28 C -0.124 4.124 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.018 0.982 48 H 0.254 0.746 49 H 0.090 0.910 50 H 0.018 0.982 51 H 0.062 0.938 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.502 17.745 15.240 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.145 4.145 6 C -0.066 4.066 7 C -0.176 4.176 8 C -0.065 4.065 9 C -0.141 4.141 10 C 0.331 3.669 11 O -0.412 6.412 12 N -0.380 5.380 13 C -0.023 4.023 14 C -0.076 4.076 15 C -0.008 4.008 16 C -0.145 4.145 17 C 0.020 3.980 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.045 3.955 28 C -0.164 4.164 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.108 0.892 50 H 0.036 0.964 51 H 0.081 0.919 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.731 18.250 14.650 23.698 hybrid contribution -0.175 -0.829 -0.036 0.848 sum 3.557 17.421 14.613 23.015 Atomic orbital electron populations 1.20822 0.91465 1.03031 1.01982 1.19678 0.95822 0.92569 0.98758 1.20927 0.94274 0.97177 1.02189 1.21064 0.94273 0.97829 1.00067 1.20937 0.99581 0.91918 1.02051 1.19698 0.92949 0.95541 0.98418 1.20881 0.99633 0.94223 1.02843 1.18968 0.92795 0.93112 1.01638 1.20667 1.02061 0.96261 0.95078 1.19947 0.77662 0.78416 0.90863 1.90727 1.51463 1.52231 1.46756 1.49724 1.55127 1.21178 1.11989 1.23212 0.98094 0.84478 0.96534 1.21650 0.98502 0.93228 0.94221 1.23058 1.00016 0.87708 0.89993 1.21702 0.93200 0.98472 1.01089 1.20877 0.91620 0.92978 0.92486 1.44024 1.00125 1.04949 1.82180 1.19194 1.11147 0.83972 1.23896 0.91722 1.25043 1.00552 0.98043 0.95991 1.70031 1.25065 1.34286 1.25213 0.86303 0.77883 0.85763 0.76898 1.21450 1.21816 1.20462 1.20788 0.88318 0.96324 0.90082 1.22069 0.94377 0.97435 1.02535 0.91119 0.91670 0.91406 0.86266 0.86243 0.86199 0.90730 0.91492 0.91441 0.87937 0.88250 0.90811 0.89887 0.90063 0.90431 0.93051 0.91723 0.92657 0.96415 0.93620 0.89177 0.96365 0.91883 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.20 36.00 0.33 -0.77 16 2 C -0.07 -0.78 5.88 -104.63 -0.62 -1.40 16 3 C -0.13 -1.34 9.70 -39.58 -0.38 -1.73 16 4 C -0.11 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.13 -1.36 9.70 -39.59 -0.38 -1.74 16 6 C -0.07 -0.77 5.88 -104.63 -0.62 -1.39 16 7 C -0.12 -1.20 9.60 36.01 0.35 -0.86 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 9 C -0.10 -1.12 4.57 -29.04 -0.13 -1.25 16 10 C 0.54 7.96 7.67 -10.99 -0.08 7.87 16 11 O -0.54 -10.08 16.81 5.55 0.09 -9.98 16 12 N -0.64 -8.99 3.46 -185.29 -0.64 -9.63 16 13 C 0.10 1.17 7.56 -8.35 -0.06 1.11 16 14 C -0.08 -1.12 0.83 -155.15 -0.13 -1.25 16 15 C 0.11 1.76 7.57 -8.20 -0.06 1.70 16 16 C -0.11 -1.71 5.26 -26.78 -0.14 -1.85 16 17 C 0.15 2.97 6.41 -3.65 -0.02 2.95 16 18 N -0.59 -14.09 2.96 -172.19 -0.51 -14.60 16 19 C -0.25 -6.70 9.56 -15.06 -0.14 -6.84 16 20 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 21 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 22 N -0.90 -25.53 11.21 55.49 0.62 -24.91 16 23 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.17 3.79 5.27 -3.64 -0.02 3.78 16 28 C -0.12 -2.08 5.31 -26.77 -0.14 -2.22 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.68 6.37 -51.93 -0.33 0.35 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.07 0.62 5.95 -51.93 -0.31 0.31 16 38 H 0.10 0.97 5.95 -51.93 -0.31 0.67 16 39 H 0.10 0.91 6.70 -51.93 -0.35 0.56 16 40 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 42 H 0.08 1.19 8.06 -51.92 -0.42 0.77 16 43 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 44 H 0.05 0.79 7.95 -51.93 -0.41 0.37 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 47 H 0.02 0.38 7.60 -51.93 -0.39 -0.02 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.09 2.28 5.97 -51.93 -0.31 1.97 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 52 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 406.15 15.07 6.12 6.12 Total: -1.00 -31.85 406.15 -11.21 -43.06 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.67 Total: 0.48 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -3.20 Total: -6.72 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.53 Total: -49.14 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.85 -11.21 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050534271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.687 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds