Wall clock time and date at job start Wed Apr 1 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46947 * 2 1 4 4 C 1.38258 * 120.00523 * 265.25726 * 3 2 1 5 5 C 1.38207 * 120.00207 * 180.27721 * 4 3 2 6 6 C 1.38263 * 119.99966 * 359.74416 * 5 4 3 7 7 C 1.38217 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.38218 * 119.99905 * 85.00333 * 3 2 1 9 9 C 1.50699 * 119.99661 * 359.97438 * 8 3 2 10 10 C 1.50701 * 109.47126 * 84.72812 * 9 8 3 11 11 O 1.21279 * 119.99801 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99976 * 180.02562 * 10 9 8 13 13 C 1.47167 * 136.00246 * 359.62282 * 12 10 9 14 14 C 1.52645 * 87.97508 * 206.72715 * 13 12 10 15 15 C 1.47166 * 135.99980 * 180.02562 * 12 10 9 16 16 C 1.52555 * 113.89963 * 88.17044 * 14 13 12 17 17 C 1.53349 * 109.13175 * 190.31222 * 16 14 13 18 18 N 1.46887 * 108.74944 * 307.75874 * 17 16 14 19 19 C 1.36938 * 120.45978 * 235.60944 * 18 17 16 20 20 H 1.07998 * 120.00575 * 28.46505 * 19 18 17 21 21 C 1.38813 * 119.99474 * 208.46539 * 19 18 17 22 22 N 1.31617 * 120.00404 * 17.65103 * 21 19 18 23 23 Si 1.86803 * 119.99821 * 197.64633 * 21 19 18 24 24 H 1.48494 * 109.47135 * 90.00235 * 23 21 19 25 25 H 1.48507 * 109.47059 * 210.00145 * 23 21 19 26 26 H 1.48503 * 109.47112 * 330.00072 * 23 21 19 27 27 C 1.46893 * 119.07648 * 55.62536 * 18 17 16 28 28 C 1.52553 * 114.26505 * 220.76702 * 14 13 12 29 29 H 1.09004 * 109.46456 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47081 * 299.99219 * 1 2 3 31 31 H 1.08991 * 109.47298 * 59.99861 * 1 2 3 32 32 H 1.09003 * 109.46923 * 240.00548 * 2 1 3 33 33 H 1.08997 * 109.47717 * 120.00153 * 2 1 3 34 34 H 1.07998 * 119.99672 * 0.05026 * 4 3 2 35 35 H 1.07996 * 120.00303 * 179.77136 * 5 4 3 36 36 H 1.08004 * 120.00154 * 179.97438 * 6 5 4 37 37 H 1.07996 * 119.99845 * 180.02562 * 7 6 5 38 38 H 1.09006 * 109.46951 * 204.72341 * 9 8 3 39 39 H 1.08999 * 109.47366 * 324.72292 * 9 8 3 40 40 H 1.09004 * 113.48675 * 321.42126 * 13 12 10 41 41 H 1.08996 * 113.48800 * 91.92238 * 13 12 10 42 42 H 1.09000 * 113.48399 * 268.07594 * 15 12 10 43 43 H 1.09003 * 113.48940 * 38.58461 * 15 12 10 44 44 H 1.09007 * 109.52603 * 310.21028 * 16 14 13 45 45 H 1.08999 * 109.52221 * 70.41004 * 16 14 13 46 46 H 1.09000 * 109.59143 * 187.97974 * 17 16 14 47 47 H 1.09000 * 109.59517 * 67.53998 * 17 16 14 48 48 H 0.97000 * 120.00487 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.59061 * 184.59293 * 27 18 17 50 50 H 1.09000 * 109.58705 * 64.14294 * 27 18 17 51 51 H 1.08994 * 109.52507 * 289.75125 * 28 14 13 52 52 H 1.09001 * 109.52573 * 49.95584 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3561 2.0397 -1.1932 5 6 2.8222 3.3408 -1.1926 6 6 2.9597 4.0254 0.0007 7 6 2.6305 3.4087 1.1931 8 6 2.1644 2.1071 1.1925 9 6 1.8055 1.4347 2.4925 10 6 2.9821 0.6318 2.9843 11 8 4.0107 0.6076 2.3422 12 7 2.8911 -0.0602 4.1373 13 6 1.8603 -0.2725 5.1660 14 6 2.9864 -0.5231 6.1655 15 6 3.7813 -0.9292 4.9235 16 6 3.5007 0.7413 6.8469 17 6 4.7821 0.4093 7.6211 18 7 4.5202 -0.7404 8.4969 19 6 4.7514 -0.6539 9.8439 20 1 4.6768 0.3002 10.3445 21 6 5.0818 -1.7925 10.5658 22 7 5.5109 -2.8676 9.9394 23 14 4.9174 -1.7990 12.4266 24 1 3.5559 -2.2580 12.8017 25 1 5.9278 -2.7181 13.0096 26 1 5.1381 -0.4261 12.9478 27 6 4.0070 -1.9843 7.9078 28 6 2.7198 -1.6695 7.1360 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 2.2483 1.5051 -2.1254 35 1 3.0786 3.8230 -2.1243 36 1 3.3243 5.0420 0.0012 37 1 2.7375 3.9436 2.1252 38 1 1.5466 2.1911 3.2335 39 1 0.9537 0.7728 2.3362 40 1 1.2764 0.6211 5.3869 41 1 1.2384 -1.1489 4.9835 42 1 3.6876 -1.9862 4.6742 43 1 4.8168 -0.5892 4.9401 44 1 3.7160 1.4992 6.0937 45 1 2.7449 1.1163 7.5369 46 1 5.0779 1.2680 8.2238 47 1 5.5787 0.1605 6.9199 48 1 5.7414 -3.6634 10.4438 49 1 3.7922 -2.7022 8.6994 50 1 4.7495 -2.3995 7.2264 51 1 1.9367 -1.3793 7.8363 52 1 2.4036 -2.5518 6.5795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050560764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:47 Heat of formation + Delta-G solvation = 37.569193 kcal Electronic energy + Delta-G solvation = -30222.911541 eV Core-core repulsion = 26381.575845 eV Total energy + Delta-G solvation = -3841.335695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.87387 -39.88888 -38.05056 -35.89297 -34.49561 -32.79956 -32.41100 -30.69911 -29.86450 -29.65368 -28.28664 -26.65725 -25.77139 -24.18574 -23.97027 -22.42042 -22.16223 -21.03806 -20.64131 -19.05633 -18.02527 -17.02199 -16.65473 -16.49749 -16.21826 -15.61827 -15.37450 -15.13871 -14.84066 -14.09459 -14.02655 -13.86293 -13.77340 -13.59076 -13.48916 -13.27245 -13.21316 -12.94203 -12.62142 -12.36411 -12.30204 -12.07870 -11.98375 -11.84878 -11.54816 -11.48857 -11.42926 -11.07918 -10.99029 -10.86330 -10.75816 -10.48503 -10.31970 -10.10385 -9.90632 -9.81120 -9.63349 -9.38856 -8.91184 -8.70960 -8.54739 -8.46923 -6.67961 -5.80585 -3.23389 1.19758 1.28316 2.70325 2.94025 3.36506 3.43900 3.44897 3.64621 4.45671 4.47688 4.51232 4.56537 4.64099 4.73106 4.78314 4.95939 5.01812 5.08276 5.14309 5.21426 5.24118 5.32343 5.36828 5.38864 5.45765 5.48938 5.52056 5.57933 5.64962 5.67046 5.70371 5.80831 5.87593 5.93854 5.96725 6.03312 6.05766 6.09488 6.25511 6.34495 6.37822 6.43702 6.52061 6.55517 6.60240 6.64253 6.80144 6.88357 6.94657 7.31283 7.62844 7.78508 7.87194 8.25098 8.44215 9.20038 9.83298 10.39718 11.27520 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.002222 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.172640 B =12599.879806 C =13084.883219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.061 4.061 9 C -0.100 4.100 10 C 0.541 3.459 11 O -0.536 6.536 12 N -0.644 5.644 13 C 0.100 3.900 14 C -0.075 4.075 15 C 0.114 3.886 16 C -0.106 4.106 17 C 0.147 3.853 18 N -0.590 5.590 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.171 3.829 28 C -0.124 4.124 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.018 0.982 48 H 0.254 0.746 49 H 0.090 0.910 50 H 0.018 0.982 51 H 0.062 0.938 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 8.141 -19.268 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.062 4.062 9 C -0.139 4.139 10 C 0.330 3.670 11 O -0.413 6.413 12 N -0.380 5.380 13 C -0.023 4.023 14 C -0.076 4.076 15 C -0.008 4.008 16 C -0.145 4.145 17 C 0.020 3.980 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.045 3.955 28 C -0.164 4.164 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.108 0.892 50 H 0.036 0.964 51 H 0.081 0.919 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.769 8.103 -19.747 24.375 hybrid contribution -0.041 -0.095 0.911 0.917 sum -11.810 8.007 -18.836 23.630 Atomic orbital electron populations 1.21770 0.94664 1.01826 1.02130 1.20566 0.95960 0.92926 1.03142 1.19662 0.98423 0.95650 0.92633 1.20960 1.00289 0.95226 0.97262 1.21092 0.99785 0.94847 0.97996 1.21065 1.00718 0.99978 0.92522 1.20990 0.98454 0.94493 0.98244 1.19135 0.99918 0.94020 0.93081 1.20666 0.97570 0.99956 0.95741 1.19962 0.89213 0.79459 0.78350 1.90729 1.31409 1.64049 1.55075 1.49716 1.18952 1.47898 1.21409 1.23207 0.92974 1.01019 0.85098 1.21641 0.94582 0.98255 0.93142 1.23057 0.96506 0.94274 0.86939 1.21707 1.00335 0.94065 0.98382 1.20880 0.92741 0.91633 0.92719 1.44027 1.74141 1.09447 1.03669 1.19195 1.41150 0.94843 0.83022 0.91718 1.25044 0.98949 0.97615 0.98018 1.70030 1.46180 1.03880 1.34515 0.86304 0.77415 0.77438 0.85695 1.21448 1.21812 1.20461 1.20788 0.89509 0.89325 0.95883 1.22067 1.02063 0.94868 0.97409 0.92261 0.92527 0.92459 0.90979 0.91081 0.86264 0.86267 0.86167 0.86190 0.88263 0.88040 0.90795 0.89872 0.90039 0.90418 0.93053 0.91719 0.92652 0.96407 0.93618 0.89176 0.96361 0.91881 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.72 37.16 0.36 -0.76 16 2 C -0.09 -0.87 5.38 -27.88 -0.15 -1.02 16 3 C -0.06 -0.72 5.13 -104.62 -0.54 -1.25 16 4 C -0.12 -1.23 9.68 -39.59 -0.38 -1.61 16 5 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 6 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 7 C -0.10 -1.17 9.68 -39.58 -0.38 -1.55 16 8 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 9 C -0.10 -1.09 4.99 -29.03 -0.14 -1.23 16 10 C 0.54 7.94 7.25 -10.99 -0.08 7.86 16 11 O -0.54 -10.07 16.81 5.56 0.09 -9.97 16 12 N -0.64 -9.00 3.46 -185.30 -0.64 -9.64 16 13 C 0.10 1.18 7.56 -8.37 -0.06 1.11 16 14 C -0.08 -1.13 0.83 -155.18 -0.13 -1.26 16 15 C 0.11 1.76 7.56 -8.21 -0.06 1.70 16 16 C -0.11 -1.73 5.25 -26.78 -0.14 -1.87 16 17 C 0.15 2.99 6.41 -3.65 -0.02 2.96 16 18 N -0.59 -14.14 2.96 -172.18 -0.51 -14.65 16 19 C -0.25 -6.72 9.56 -15.06 -0.14 -6.86 16 20 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 21 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 22 N -0.90 -25.56 11.21 55.49 0.62 -24.94 16 23 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.17 3.80 5.27 -3.65 -0.02 3.78 16 28 C -0.12 -2.09 5.31 -26.78 -0.14 -2.23 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.42 6.79 -51.93 -0.35 0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.65 8.05 -51.93 -0.42 0.24 16 33 H 0.07 0.81 6.40 -51.93 -0.33 0.47 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 39 H 0.10 0.93 5.63 -51.93 -0.29 0.63 16 40 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.08 0.85 8.09 -51.93 -0.42 0.42 16 42 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 43 H 0.08 1.36 7.53 -51.93 -0.39 0.97 16 44 H 0.05 0.80 7.95 -51.93 -0.41 0.38 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 47 H 0.02 0.38 7.59 -51.93 -0.39 -0.01 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 49 H 0.09 2.28 5.97 -51.93 -0.31 1.97 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 52 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 407.69 15.07 6.14 6.14 Total: -1.00 -31.71 407.69 -11.47 -43.18 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.77 Total: 0.34 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.38 Total: -6.66 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.53 Total: -49.23 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.71 -11.47 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050560764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.748 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds