Wall clock time and date at job start Wed Apr 1 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.46844 * 2 1 4 4 C 1.38253 * 120.00246 * 90.00370 * 3 2 1 5 5 C 1.38218 * 119.99967 * 179.97438 * 4 3 2 6 6 C 1.38251 * 119.99725 * 0.02562 * 5 4 3 7 7 C 1.38212 * 120.00508 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00087 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47316 * 90.00156 * 8 7 6 10 10 O 1.21281 * 120.00028 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00084 * 179.72901 * 9 8 7 12 12 C 1.47166 * 135.99906 * 359.89512 * 11 9 8 13 13 C 1.52670 * 87.96206 * 206.74581 * 12 11 9 14 14 C 1.47157 * 136.00326 * 180.27740 * 11 9 8 15 15 C 1.52547 * 113.91474 * 88.15634 * 13 12 11 16 16 C 1.53349 * 109.13227 * 190.30693 * 15 13 12 17 17 N 1.46889 * 108.75004 * 307.75683 * 16 15 13 18 18 C 1.36932 * 120.46378 * 235.64336 * 17 16 15 19 19 H 1.08000 * 120.00241 * 28.44231 * 18 17 16 20 20 C 1.38817 * 120.00073 * 208.43625 * 18 17 16 21 21 N 1.31615 * 119.99869 * 17.66147 * 20 18 17 22 22 Si 1.86801 * 119.99906 * 197.65730 * 20 18 17 23 23 H 1.48502 * 109.47159 * 60.00355 * 22 20 18 24 24 H 1.48501 * 109.46985 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47051 * 300.00096 * 22 20 18 26 26 C 1.46890 * 119.07290 * 55.62890 * 17 16 15 27 27 C 1.52557 * 114.24644 * 220.75388 * 13 12 11 28 28 C 1.38211 * 119.99600 * 270.27321 * 3 2 1 29 29 H 1.09001 * 109.47226 * 60.00084 * 1 2 3 30 30 H 1.08997 * 109.47571 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47177 * 300.00137 * 1 2 3 32 32 H 1.08994 * 109.46655 * 240.00082 * 2 1 3 33 33 H 1.08992 * 109.47090 * 119.99674 * 2 1 3 34 34 H 1.07997 * 119.99713 * 359.97438 * 4 3 2 35 35 H 1.07993 * 119.99599 * 179.97438 * 5 4 3 36 36 H 1.08005 * 119.99615 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47441 * 330.00195 * 8 7 6 38 38 H 1.09004 * 109.47284 * 210.00319 * 8 7 6 39 39 H 1.08995 * 113.49097 * 321.44096 * 12 11 9 40 40 H 1.09003 * 113.48743 * 91.94739 * 12 11 9 41 41 H 1.09000 * 113.49044 * 268.05719 * 14 11 9 42 42 H 1.09008 * 113.48880 * 38.56186 * 14 11 9 43 43 H 1.08996 * 109.52907 * 310.20455 * 15 13 12 44 44 H 1.09006 * 109.52444 * 70.41073 * 15 13 12 45 45 H 1.09001 * 109.59266 * 187.97932 * 16 15 13 46 46 H 1.09002 * 109.59452 * 67.53811 * 16 15 13 47 47 H 0.97005 * 119.99978 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.59311 * 184.59314 * 26 17 16 49 49 H 1.08999 * 109.59865 * 64.13590 * 26 17 16 50 50 H 1.08993 * 109.52832 * 289.73467 * 27 13 12 51 51 H 1.09000 * 109.53035 * 49.94999 * 27 13 12 52 52 H 1.08005 * 120.00873 * 0.02594 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7240 3.3756 1.1972 6 6 2.9543 4.0273 -0.0001 7 6 2.7239 3.3757 -1.1971 8 6 2.9743 4.0863 -2.5021 9 6 4.3976 3.8502 -2.9376 10 8 5.1360 3.1720 -2.2552 11 7 4.8485 4.3885 -4.0881 12 6 4.2846 5.2305 -5.1552 13 6 5.3056 4.6126 -6.1074 14 6 6.1184 4.3866 -4.8315 15 6 4.8284 3.3277 -6.7769 16 6 6.0102 2.6671 -7.4968 17 7 6.6437 3.6605 -8.3741 18 6 6.7963 3.4088 -9.7114 19 1 6.1008 2.7586 -10.2213 20 6 7.8448 3.9894 -10.4118 21 7 8.8759 4.4854 -9.7613 22 14 7.7923 4.0666 -12.2775 23 1 6.6009 4.8418 -12.7075 24 1 9.0225 4.7293 -12.7802 25 1 7.7121 2.6897 -12.8278 26 6 7.1109 4.9278 -7.7968 27 6 5.9367 5.6049 -7.0792 28 6 2.2573 2.0742 -1.1970 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 2.0825 1.5636 2.1326 35 1 2.9036 3.8848 2.1325 36 1 3.3142 5.0456 -0.0002 37 1 2.8070 5.1555 -2.3717 38 1 2.2934 3.7020 -3.2617 39 1 3.2534 4.9819 -5.4057 40 1 4.4339 6.2978 -4.9911 41 1 6.7712 5.2220 -4.5784 42 1 6.6336 3.4262 -4.8090 43 1 4.4356 2.6474 -6.0213 44 1 4.0465 3.5621 -7.4993 45 1 5.6521 1.8282 -8.0935 46 1 6.7341 2.3135 -6.7626 47 1 9.6084 4.8914 -10.2507 48 1 7.4777 5.5780 -8.5910 49 1 7.9111 4.7316 -7.0832 50 1 5.1940 5.9192 -7.8124 51 1 6.2979 6.4740 -6.5294 52 1 2.0727 1.5668 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050568022.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:51 Heat of formation + Delta-G solvation = 19.399659 kcal Electronic energy + Delta-G solvation = -29639.926834 eV Core-core repulsion = 25797.803248 eV Total energy + Delta-G solvation = -3842.123585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.24 seconds Orbital eigenvalues (eV) -41.99513 -40.60417 -39.32333 -37.53469 -35.32812 -34.27558 -33.38712 -32.23438 -31.42932 -30.42939 -29.41582 -27.92285 -26.82813 -25.84545 -24.80073 -23.97259 -23.05811 -22.54658 -21.45840 -20.16128 -19.45505 -18.40264 -17.86417 -17.48233 -17.02843 -16.85074 -16.67889 -16.38958 -15.85608 -15.61429 -15.43142 -15.15817 -14.91554 -14.68383 -14.56074 -14.47548 -14.10329 -13.95078 -13.83163 -13.73394 -13.37030 -13.09263 -12.99379 -12.92544 -12.82534 -12.79832 -12.58789 -12.52337 -12.28006 -12.15567 -12.02656 -11.80002 -11.70740 -11.64005 -11.37995 -11.26786 -11.14837 -10.77881 -10.47234 -9.70383 -9.68400 -9.49886 -8.63532 -7.84633 -5.30311 0.40795 0.50725 1.49304 1.50718 1.57838 1.61780 1.88005 2.53640 2.84724 3.25313 3.39532 3.59423 3.68314 3.74887 3.80986 3.88366 3.99688 4.08270 4.22009 4.25583 4.29295 4.36503 4.45068 4.49625 4.50639 4.56263 4.58384 4.62062 4.63486 4.69193 4.73529 4.77614 4.83263 4.83990 4.93703 5.01929 5.04453 5.08798 5.15697 5.19264 5.21199 5.22616 5.37139 5.37994 5.38160 5.55984 5.57003 5.65781 5.68110 5.72882 5.82693 6.14021 6.42603 6.79312 7.13524 7.18542 7.89893 8.40964 9.20728 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023061 B = 0.002065 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.872182 B =13556.251220 C =14207.483445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.124 4.124 6 C -0.127 4.127 7 C -0.077 4.077 8 C -0.085 4.085 9 C 0.536 3.464 10 O -0.589 6.589 11 N -0.643 5.643 12 C 0.119 3.881 13 C -0.078 4.078 14 C 0.108 3.892 15 C -0.091 4.091 16 C 0.143 3.857 17 N -0.607 5.607 18 C -0.262 4.262 19 H 0.065 0.935 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.279 1.279 26 C 0.175 3.825 27 C -0.108 4.108 28 C -0.121 4.121 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.000 1.000 47 H 0.249 0.751 48 H 0.056 0.944 49 H -0.008 1.008 50 H 0.068 0.932 51 H 0.080 0.920 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.359 1.106 19.422 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.145 4.145 7 C -0.078 4.078 8 C -0.124 4.124 9 C 0.328 3.672 10 O -0.470 6.470 11 N -0.378 5.378 12 C -0.003 4.003 13 C -0.079 4.079 14 C -0.015 4.015 15 C -0.130 4.130 16 C 0.017 3.983 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.794 3.206 23 H -0.201 1.201 24 H -0.222 1.222 25 H -0.205 1.205 26 C 0.049 3.951 27 C -0.147 4.147 28 C -0.139 4.139 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.018 0.982 47 H 0.059 0.941 48 H 0.075 0.925 49 H 0.010 0.990 50 H 0.086 0.914 51 H 0.098 0.902 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.926 0.708 19.923 27.488 hybrid contribution 1.108 -0.164 -1.098 1.568 sum -17.818 0.544 18.825 25.926 Atomic orbital electron populations 1.21711 0.93650 1.02421 1.02069 1.20586 0.97012 0.91582 1.03152 1.20136 0.98886 0.97055 0.93072 1.21293 1.00121 0.95188 0.98071 1.21381 0.99072 0.95245 0.98474 1.21209 1.00193 1.00754 0.92309 1.19491 0.99129 0.94777 0.94353 1.20624 0.91811 1.03997 0.96015 1.20755 0.90377 0.78277 0.77809 1.90705 1.60275 1.41688 1.54299 1.49773 1.15772 1.51073 1.21135 1.23236 0.99528 0.96184 0.81302 1.21532 0.96661 0.96926 0.92781 1.23035 0.88566 1.01265 0.88674 1.21497 0.97904 0.95026 0.98525 1.20981 0.93217 0.91793 0.92274 1.44289 1.69708 1.14531 1.04550 1.19463 1.06648 1.27726 0.85357 0.91761 1.25784 0.94468 1.02219 1.02117 1.70185 1.07747 1.44338 1.35749 0.85370 0.76641 0.77836 0.80758 1.20052 1.22244 1.20493 1.20637 0.92379 0.87095 0.94997 1.21833 0.98519 0.96766 0.97609 1.21045 1.00372 0.94272 0.98242 0.92951 0.91243 0.92357 0.91408 0.90232 0.84407 0.84124 0.85351 0.85467 0.86025 0.87775 0.87008 0.89257 0.93593 0.91916 0.90731 0.93114 0.98158 0.94150 0.92539 0.98980 0.91355 0.90188 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.90 71.98 0.71 -1.03 16 2 C -0.09 -1.32 6.06 29.85 0.18 -1.14 16 3 C -0.09 -1.82 5.13 -19.87 -0.10 -1.92 16 4 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 5 C -0.12 -2.31 10.05 22.27 0.22 -2.08 16 6 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 7 C -0.08 -1.69 4.37 -19.87 -0.09 -1.78 16 8 C -0.09 -1.59 5.66 29.10 0.16 -1.42 16 9 C 0.54 14.95 8.07 87.66 0.71 15.66 16 10 O -0.59 -22.43 16.81 -3.03 -0.05 -22.48 16 11 N -0.64 -16.57 3.46 -858.61 -2.97 -19.55 16 12 C 0.12 2.28 7.56 83.22 0.63 2.91 16 13 C -0.08 -2.18 0.83 -52.60 -0.04 -2.22 16 14 C 0.11 3.26 7.56 83.31 0.63 3.89 16 15 C -0.09 -2.82 5.25 30.56 0.16 -2.66 16 16 C 0.14 5.92 6.41 86.42 0.55 6.47 16 17 N -0.61 -29.73 2.96 -698.64 -2.07 -31.80 16 18 C -0.26 -14.15 9.56 84.04 0.80 -13.35 16 19 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16 20 C -0.05 -2.78 4.89 84.86 0.42 -2.37 16 21 N -0.93 -54.75 11.21 21.65 0.24 -54.51 16 22 Si 0.97 44.23 29.59 68.60 2.03 46.26 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.17 7.96 5.27 86.43 0.46 8.42 16 27 C -0.11 -3.45 5.31 30.57 0.16 -3.28 16 28 C -0.12 -2.68 9.36 22.27 0.21 -2.47 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 34 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.13 1.66 8.09 -2.38 -0.02 1.64 16 38 H 0.12 1.75 8.08 -2.38 -0.02 1.73 16 39 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.11 1.64 8.09 -2.39 -0.02 1.62 16 41 H 0.09 2.55 8.06 -2.39 -0.02 2.53 16 42 H 0.05 1.67 7.53 -2.38 -0.02 1.65 16 43 H 0.06 1.83 7.95 -2.39 -0.02 1.81 16 44 H 0.07 2.21 8.14 -2.38 -0.02 2.20 16 45 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 46 H 0.00 0.02 7.60 -2.39 -0.02 0.00 16 47 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 48 H 0.06 2.95 5.97 -2.39 -0.01 2.94 16 49 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 50 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 52 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -72.59 414.94 4.26 -68.33 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.87 Total: 16.69 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.21 Total: -2.94 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -4.80 Total: -105.85 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -72.59 4.26 -68.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050568022.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.725 kcal (2) G-P(sol) polarization free energy of solvation -72.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.24 seconds