Wall clock time and date at job start Wed Apr 1 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.99926 * 2 1 4 4 C 1.38218 * 120.00076 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99678 * 0.02685 * 4 3 2 6 6 C 1.50705 * 119.99667 * 179.97438 * 5 4 3 7 7 C 1.38205 * 120.00136 * 359.97438 * 5 4 3 8 8 C 1.50700 * 119.99712 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47406 * 85.00173 * 8 7 5 10 10 O 1.21286 * 119.99914 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00361 * 180.27145 * 9 8 7 12 12 C 1.47171 * 135.99762 * 359.36195 * 11 9 8 13 13 C 1.52645 * 87.96561 * 206.71685 * 12 11 9 14 14 C 1.47155 * 136.00259 * 179.71879 * 11 9 8 15 15 C 1.52548 * 113.89714 * 88.17292 * 13 12 11 16 16 C 1.53356 * 109.12990 * 190.30012 * 15 13 12 17 17 N 1.46882 * 108.75050 * 307.76172 * 16 15 13 18 18 C 1.36946 * 120.46147 * 235.60064 * 17 16 15 19 19 H 1.07997 * 119.99735 * 149.72227 * 18 17 16 20 20 C 1.38805 * 119.99804 * 329.72524 * 18 17 16 21 21 N 1.31617 * 119.99966 * 158.00748 * 20 18 17 22 22 Si 1.86802 * 120.00244 * 338.00613 * 20 18 17 23 23 H 1.48501 * 109.47053 * 87.67077 * 22 20 18 24 24 H 1.48497 * 109.46971 * 207.66907 * 22 20 18 25 25 H 1.48501 * 109.47105 * 327.67021 * 22 20 18 26 26 C 1.46896 * 119.07848 * 55.62436 * 17 16 15 27 27 C 1.52556 * 114.25376 * 220.76415 * 13 12 11 28 28 C 1.38211 * 120.00202 * 180.28307 * 2 1 3 29 29 H 1.08995 * 109.47543 * 89.99451 * 1 2 3 30 30 H 1.09005 * 109.47106 * 209.99838 * 1 2 3 31 31 H 1.09000 * 109.47155 * 329.99885 * 1 2 3 32 32 H 1.08000 * 119.99854 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99944 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.46667 * 270.02216 * 6 5 4 35 35 H 1.08997 * 109.46907 * 30.01604 * 6 5 4 36 36 H 1.08994 * 109.47190 * 150.01785 * 6 5 4 37 37 H 1.09000 * 109.47156 * 324.99452 * 8 7 5 38 38 H 1.09007 * 109.46919 * 204.99644 * 8 7 5 39 39 H 1.09004 * 113.48431 * 321.40610 * 12 11 9 40 40 H 1.08997 * 113.48956 * 91.91462 * 12 11 9 41 41 H 1.09001 * 113.49382 * 268.09151 * 14 11 9 42 42 H 1.09005 * 113.48944 * 38.59731 * 14 11 9 43 43 H 1.08993 * 109.52915 * 310.19829 * 15 13 12 44 44 H 1.09007 * 109.52787 * 70.40816 * 15 13 12 45 45 H 1.08998 * 109.59311 * 187.97632 * 16 15 13 46 46 H 1.09004 * 109.58975 * 67.53517 * 16 15 13 47 47 H 0.97001 * 120.00323 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.59519 * 184.59242 * 26 17 16 49 49 H 1.08998 * 109.59108 * 64.14029 * 26 17 16 50 50 H 1.09005 * 109.52547 * 289.74787 * 27 13 12 51 51 H 1.08989 * 109.53394 * 49.96014 * 27 13 12 52 52 H 1.07997 * 119.99826 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0001 0.0005 7 6 3.5807 -1.1969 0.0005 8 6 4.3342 -2.5019 -0.0001 9 6 4.6932 -2.8755 1.4150 10 8 4.3686 -2.1532 2.3337 11 7 5.3792 -4.0096 1.6593 12 6 5.9275 -5.1102 0.8507 13 6 5.7898 -6.0078 2.0776 14 6 5.9031 -4.6937 2.8522 15 6 4.4284 -6.6856 2.1977 16 6 4.3148 -7.3439 3.5781 17 7 5.4886 -8.2009 3.7905 18 6 5.3339 -9.5272 4.0948 19 1 6.0811 -10.2429 3.7853 20 6 4.2168 -9.9515 4.8010 21 7 3.8310 -11.2078 4.7294 22 14 3.2609 -8.7394 5.8530 23 1 2.2323 -8.0652 5.0206 24 1 2.5987 -9.4653 6.9664 25 1 4.1917 -7.7243 6.4082 26 6 6.8307 -7.6156 3.6725 27 6 6.9625 -6.9596 2.2926 28 6 2.1981 -1.1969 -0.0059 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1327 0.0004 33 1 4.1204 2.1327 0.0001 34 1 6.1420 0.0005 -1.0272 35 1 6.1420 0.8899 0.5146 36 1 6.1421 -0.8900 0.5140 37 1 5.2446 -2.3955 -0.5900 38 1 3.7091 -3.2822 -0.4344 39 1 5.2815 -5.4053 0.0238 40 1 6.9609 -4.9503 0.5431 41 1 6.9298 -4.4194 3.0947 42 1 5.2365 -4.6379 3.7129 43 1 3.6398 -5.9420 2.0826 44 1 4.3301 -7.4455 1.4225 45 1 3.4085 -7.9478 3.6216 46 1 4.2806 -6.5736 4.3487 47 1 3.0501 -11.5042 5.2226 48 1 7.5816 -8.3986 3.7781 49 1 6.9713 -6.8641 4.4494 50 1 6.9532 -7.7293 1.5208 51 1 7.8979 -6.4026 2.2418 52 1 1.6581 -2.1322 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050644997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:49 Heat of formation + Delta-G solvation = 40.784243 kcal Electronic energy + Delta-G solvation = -30220.932962 eV Core-core repulsion = 26379.736682 eV Total energy + Delta-G solvation = -3841.196280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.99404 -39.95871 -38.22975 -36.18219 -34.37763 -32.70472 -32.40776 -30.78714 -30.54581 -29.49548 -28.63326 -26.85397 -25.94375 -24.94617 -23.96435 -22.95408 -22.36224 -21.19778 -20.49663 -19.04965 -18.23662 -17.08069 -16.52388 -16.32956 -16.12613 -15.74314 -15.56818 -15.19205 -14.83195 -14.34108 -14.12104 -14.04418 -13.79879 -13.57025 -13.49361 -13.28579 -13.14127 -12.91932 -12.87421 -12.83913 -12.48936 -12.20209 -12.12193 -12.04297 -11.80832 -11.74656 -11.65823 -11.56689 -11.13366 -11.10300 -10.77370 -10.61506 -10.46691 -10.13743 -10.01129 -9.82695 -9.60895 -9.49469 -8.90948 -8.67375 -8.56666 -8.52629 -6.95184 -5.98150 -3.34518 1.15897 1.24718 2.62798 2.83762 3.32551 3.49072 3.53007 3.56877 4.35996 4.42424 4.51812 4.53049 4.57365 4.69531 4.80790 4.88291 4.94005 4.98122 5.04916 5.14098 5.19638 5.28465 5.33770 5.36342 5.37029 5.37558 5.38971 5.40950 5.44275 5.53557 5.56740 5.72407 5.72625 5.77456 5.85066 5.90504 5.96863 6.01799 6.04198 6.14530 6.27360 6.27756 6.33686 6.42547 6.43129 6.48692 6.60928 6.65656 6.69521 6.87271 6.90357 7.76591 7.97796 8.17058 8.32283 8.93852 9.70758 10.09604 11.17823 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.002611 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.370179 B =10720.114195 C =11802.803561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.075 4.075 6 C -0.115 4.115 7 C -0.061 4.061 8 C -0.097 4.097 9 C 0.541 3.459 10 O -0.534 6.534 11 N -0.645 5.645 12 C 0.102 3.898 13 C -0.078 4.078 14 C 0.112 3.888 15 C -0.106 4.106 16 C 0.130 3.870 17 N -0.604 5.604 18 C -0.262 4.262 19 H 0.084 0.916 20 C 0.028 3.972 21 N -0.905 5.905 22 Si 0.877 3.123 23 H -0.286 1.286 24 H -0.302 1.302 25 H -0.273 1.273 26 C 0.148 3.852 27 C -0.117 4.117 28 C -0.103 4.103 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.022 0.978 47 H 0.263 0.737 48 H 0.065 0.935 49 H 0.022 0.978 50 H 0.070 0.930 51 H 0.059 0.941 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 22.012 -14.329 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.075 4.075 6 C -0.171 4.171 7 C -0.061 4.061 8 C -0.136 4.136 9 C 0.331 3.669 10 O -0.410 6.410 11 N -0.381 5.381 12 C -0.021 4.021 13 C -0.079 4.079 14 C -0.011 4.011 15 C -0.146 4.146 16 C 0.004 3.996 17 N -0.328 5.328 18 C -0.390 4.390 19 H 0.101 0.899 20 C -0.172 4.172 21 N -0.548 5.548 22 Si 0.707 3.293 23 H -0.214 1.214 24 H -0.230 1.230 25 H -0.198 1.198 26 C 0.022 3.978 27 C -0.157 4.157 28 C -0.121 4.121 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.040 0.960 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.040 0.960 50 H 0.089 0.911 51 H 0.077 0.923 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.445 22.464 -13.801 26.404 hybrid contribution -0.617 0.634 0.648 1.097 sum 0.828 23.098 -13.153 26.593 Atomic orbital electron populations 1.20774 0.91231 1.02842 1.02134 1.19838 0.96014 0.93053 1.00318 1.20974 0.94134 0.97383 1.01150 1.20938 0.94157 0.97236 1.01186 1.19660 0.95834 0.92580 0.99439 1.20803 0.91503 1.02983 1.01855 1.19112 0.93348 0.93096 1.00554 1.20608 1.01902 0.96253 0.94883 1.19994 0.77547 0.78480 0.90888 1.90737 1.54122 1.49730 1.46422 1.49670 1.54507 1.21536 1.12352 1.23169 0.98821 0.83808 0.96283 1.21654 0.98406 0.93230 0.94625 1.23070 0.99016 0.88484 0.90497 1.21710 0.93148 0.98749 1.00952 1.21325 0.91965 0.93429 0.92862 1.44329 0.99467 1.07462 1.81514 1.18880 1.08524 0.81617 1.30008 0.89851 1.25337 0.98012 0.95369 0.98464 1.69851 1.25827 1.15979 1.43109 0.87045 0.79820 0.81291 0.81101 1.21368 1.23018 1.19775 1.20934 0.88151 0.96064 0.92643 1.21874 0.94742 0.97952 1.01098 1.20865 0.93239 0.97736 1.00251 0.91295 0.91508 0.91636 0.86258 0.86170 0.91201 0.91481 0.91768 0.88086 0.88146 0.90502 0.89734 0.89962 0.90475 0.92763 0.90972 0.90642 0.96024 0.92736 0.91615 0.95962 0.91087 0.92257 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.00 0.36 -0.56 16 2 C -0.09 -0.98 5.88 -104.63 -0.62 -1.60 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 5 C -0.08 -0.85 5.88 -104.62 -0.62 -1.46 16 6 C -0.11 -1.07 9.22 36.01 0.33 -0.73 16 7 C -0.06 -0.72 4.37 -104.63 -0.46 -1.18 16 8 C -0.10 -1.03 4.98 -29.04 -0.14 -1.18 16 9 C 0.54 7.73 7.29 -10.99 -0.08 7.65 16 10 O -0.53 -9.86 16.81 5.55 0.09 -9.77 16 11 N -0.64 -8.53 3.46 -185.33 -0.64 -9.17 16 12 C 0.10 1.09 7.56 -8.37 -0.06 1.03 16 13 C -0.08 -1.08 0.83 -155.17 -0.13 -1.21 16 14 C 0.11 1.57 7.56 -8.21 -0.06 1.51 16 15 C -0.11 -1.78 5.25 -26.78 -0.14 -1.92 16 16 C 0.13 2.75 4.14 -3.65 -0.02 2.74 16 17 N -0.60 -13.69 2.68 -172.18 -0.46 -14.16 16 18 C -0.26 -7.10 9.97 -15.06 -0.15 -7.25 16 19 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 20 C 0.03 0.79 5.17 -17.43 -0.09 0.70 16 21 N -0.91 -27.36 13.97 55.49 0.78 -26.59 16 22 Si 0.88 22.35 24.56 -169.99 -4.18 18.18 16 23 H -0.29 -7.05 6.44 56.52 0.36 -6.68 16 24 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 25 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.15 2.68 6.42 -3.64 -0.02 2.66 16 27 C -0.12 -1.63 5.31 -26.77 -0.14 -1.77 16 28 C -0.10 -1.20 9.34 -39.58 -0.37 -1.57 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.06 0.66 6.16 -51.93 -0.32 0.34 16 37 H 0.10 0.86 6.99 -51.93 -0.36 0.50 16 38 H 0.10 0.92 8.05 -51.92 -0.42 0.50 16 39 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 41 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 42 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 43 H 0.05 0.88 7.95 -51.93 -0.41 0.46 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.79 4.66 -51.93 -0.24 1.55 16 46 H 0.02 0.47 6.92 -51.93 -0.36 0.11 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.06 0.66 8.09 -51.94 -0.42 0.24 16 52 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -33.52 404.77 -10.32 -43.84 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.83 Total: -1.10 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -3.17 Total: -7.32 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.33 Total: -49.92 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.18 Total: 18.18 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.52 -10.32 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050644997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.624 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds