Wall clock time and date at job start Wed Apr 1 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 119.99649 * 2 1 4 4 C 1.38233 * 119.99756 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00025 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00526 * 0.02562 * 4 3 2 7 7 C 1.38247 * 119.99530 * 359.95528 * 6 4 3 8 8 C 1.50699 * 119.99749 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.47143 * 89.99882 * 8 7 6 10 10 O 1.21284 * 119.99895 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99716 * 179.97438 * 9 8 7 12 12 C 1.47666 * 134.45183 * 180.02562 * 11 9 8 13 13 C 1.53511 * 85.97696 * 204.27772 * 12 11 9 14 14 C 1.47661 * 134.45901 * 359.94880 * 11 9 8 15 15 C 1.52678 * 113.57081 * 91.01646 * 13 12 11 16 16 C 1.53332 * 109.10899 * 73.81117 * 15 13 12 17 17 N 1.46878 * 108.76300 * 52.40554 * 16 15 13 18 18 C 1.36942 * 120.46612 * 124.47682 * 17 16 15 19 19 H 1.07995 * 119.99541 * 331.55754 * 18 17 16 20 20 C 1.38808 * 119.99991 * 151.83908 * 18 17 16 21 21 N 1.31615 * 120.00070 * 342.22560 * 20 18 17 22 22 Si 1.86804 * 119.99766 * 162.22409 * 20 18 17 23 23 H 1.48496 * 109.46872 * 90.00294 * 22 20 18 24 24 H 1.48500 * 109.46904 * 210.00085 * 22 20 18 25 25 H 1.48496 * 109.47110 * 329.99821 * 22 20 18 26 26 C 1.46886 * 119.06696 * 304.74054 * 17 16 15 27 27 C 1.52668 * 113.56318 * 222.23305 * 13 12 11 28 28 C 1.38227 * 119.99901 * 0.27612 * 7 6 4 29 29 H 1.08996 * 109.47184 * 90.00536 * 1 2 3 30 30 H 1.09004 * 109.46705 * 210.00263 * 1 2 3 31 31 H 1.08991 * 109.47532 * 330.00310 * 1 2 3 32 32 H 1.08001 * 120.00082 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47604 * 270.02393 * 5 4 3 34 34 H 1.09004 * 109.46650 * 30.02874 * 5 4 3 35 35 H 1.08999 * 109.46913 * 150.01980 * 5 4 3 36 36 H 1.07995 * 120.00623 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.47122 * 329.99706 * 8 7 6 38 38 H 1.09002 * 109.46745 * 210.00090 * 8 7 6 39 39 H 1.09000 * 113.79346 * 90.01535 * 12 11 9 40 40 H 1.09001 * 113.79382 * 318.54421 * 12 11 9 41 41 H 1.09007 * 113.78835 * 41.45255 * 14 11 9 42 42 H 1.08993 * 113.79356 * 269.98662 * 14 11 9 43 43 H 1.08995 * 109.53071 * 313.91735 * 15 13 12 44 44 H 1.09003 * 109.52565 * 193.70201 * 15 13 12 45 45 H 1.08997 * 109.59136 * 292.61845 * 16 15 13 46 46 H 1.09003 * 109.58453 * 172.18620 * 16 15 13 47 47 H 0.97003 * 120.00256 * 180.02562 * 21 20 18 48 48 H 1.09011 * 109.58604 * 175.04276 * 26 17 16 49 49 H 1.08997 * 109.59165 * 295.47702 * 26 17 16 50 50 H 1.09002 * 109.53118 * 46.08387 * 27 13 12 51 51 H 1.09001 * 109.53276 * 166.30072 * 27 13 12 52 52 H 1.08001 * 120.00115 * 179.72394 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 6 4.2717 0.0002 0.0005 7 6 3.5805 -1.1971 0.0009 8 6 4.3341 -2.5021 0.0015 9 6 4.5852 -2.9366 1.4226 10 8 4.1906 -2.2539 2.3441 11 7 5.2474 -4.0843 1.6693 12 6 5.6588 -4.7978 2.8949 13 6 6.7533 -5.4345 2.0270 14 6 5.8508 -5.1327 0.8225 15 6 8.0628 -4.6495 2.0225 16 6 8.7734 -4.8511 3.3662 17 7 8.8834 -6.2916 3.6311 18 6 10.1043 -6.8611 3.8769 19 1 10.9977 -6.4272 3.4527 20 6 10.1929 -7.9994 4.6663 21 7 9.1934 -8.3326 5.4551 22 14 11.7307 -9.0584 4.6090 23 1 12.6999 -8.5789 5.6267 24 1 11.3703 -10.4703 4.8951 25 1 12.3441 -8.9677 3.2597 26 6 7.6662 -7.1137 3.6229 27 6 6.9476 -6.9263 2.2869 28 6 2.1983 -1.1971 -0.0044 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5137 32 1 1.6581 2.1325 -0.0004 33 1 4.5156 2.8166 -1.0278 34 1 3.7448 3.2622 0.5135 35 1 5.2863 2.3723 0.5139 36 1 5.3517 0.0002 0.0005 37 1 5.2866 -2.3719 -0.5123 38 1 3.7451 -3.2620 -0.5121 39 1 4.9176 -5.5089 3.2595 40 1 6.0432 -4.1430 3.6769 41 1 6.3877 -4.7439 -0.0429 42 1 5.1667 -5.9432 0.5716 43 1 7.8521 -3.5901 1.8770 44 1 8.7007 -5.0096 1.2153 45 1 8.1961 -4.3766 4.1597 46 1 9.7694 -4.4104 3.3225 47 1 9.2554 -9.1279 6.0071 48 1 7.9331 -8.1631 3.7484 49 1 7.0092 -6.8019 4.4349 50 1 5.9763 -7.4197 2.3216 51 1 7.5495 -7.3600 1.4884 52 1 1.6583 -2.1324 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050645293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:55 Heat of formation + Delta-G solvation = 30.430791 kcal Electronic energy + Delta-G solvation = -29678.377980 eV Core-core repulsion = 25836.732741 eV Total energy + Delta-G solvation = -3841.645239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.69618 -39.78466 -38.13448 -35.84083 -33.68172 -33.61910 -32.46683 -30.71278 -29.88214 -28.79955 -27.42620 -26.85519 -26.64643 -25.83928 -24.09424 -22.38272 -21.36269 -20.89940 -20.71487 -18.93643 -18.03574 -17.01181 -16.49215 -16.39410 -16.09305 -15.66992 -15.40490 -14.86242 -14.46242 -14.18668 -14.12632 -13.85402 -13.58557 -13.46540 -13.43219 -13.16009 -13.10065 -13.00173 -12.74790 -12.66911 -12.49120 -12.19502 -11.92034 -11.85241 -11.67678 -11.54809 -11.43275 -11.17525 -11.12919 -11.06380 -10.72570 -10.51159 -10.32332 -10.15001 -9.89833 -9.81761 -9.64044 -9.33502 -8.71712 -8.65676 -8.52047 -8.46095 -6.67244 -5.80560 -3.22878 1.20883 1.26357 2.72770 2.93876 3.36142 3.43571 3.45538 3.60409 4.46305 4.48199 4.55314 4.57432 4.61762 4.64238 4.97380 5.02583 5.09379 5.13253 5.15610 5.22347 5.33859 5.34382 5.37230 5.37762 5.40922 5.42876 5.48323 5.53520 5.58432 5.63824 5.64604 5.66372 5.87196 5.94253 6.00826 6.04224 6.06276 6.10959 6.26034 6.40186 6.40700 6.43846 6.50490 6.55767 6.60177 6.65799 6.80259 6.90507 6.94680 7.31662 7.62985 7.78443 7.85815 8.27219 8.44398 9.20168 9.83727 10.40029 11.27739 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.002044 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.925841 B =13695.471414 C =14196.666683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.055 4.055 8 C -0.097 4.097 9 C 0.533 3.467 10 O -0.538 6.538 11 N -0.641 5.641 12 C 0.118 3.882 13 C -0.074 4.074 14 C 0.101 3.899 15 C -0.107 4.107 16 C 0.147 3.853 17 N -0.590 5.590 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.170 3.830 27 C -0.127 4.127 28 C -0.111 4.111 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.018 0.982 46 H 0.055 0.945 47 H 0.254 0.746 48 H 0.089 0.911 49 H 0.018 0.982 50 H 0.053 0.947 51 H 0.062 0.938 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.090 13.998 -15.296 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.055 4.055 8 C -0.137 4.137 9 C 0.322 3.678 10 O -0.415 6.415 11 N -0.377 5.377 12 C -0.003 4.003 13 C -0.075 4.075 14 C -0.022 4.022 15 C -0.147 4.147 16 C 0.020 3.980 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.045 3.955 27 C -0.167 4.167 28 C -0.129 4.129 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.036 0.964 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.412 14.422 -14.708 25.140 hybrid contribution 0.699 -0.728 0.025 1.010 sum -13.713 13.693 -14.683 24.313 Atomic orbital electron populations 1.20770 0.91271 1.02794 1.02101 1.19823 0.95921 0.93024 0.99608 1.20855 0.93493 0.97385 1.02412 1.19835 0.93807 0.95171 0.99468 1.20780 1.00041 0.94043 1.02137 1.20833 0.99539 0.91430 1.00981 1.19252 0.93489 0.93567 0.99185 1.20609 1.02013 0.95935 0.95108 1.20123 0.76691 0.80035 0.90917 1.90725 1.50578 1.53670 1.46515 1.50140 1.56029 1.20288 1.11250 1.23258 0.94479 0.93266 0.89331 1.21982 0.94323 0.97591 0.93576 1.23476 0.94021 0.88651 0.96025 1.21758 0.94426 0.97381 1.01087 1.20881 0.97664 0.86988 0.92470 1.44002 1.04087 1.01072 1.82122 1.19156 0.85550 1.09113 1.24383 0.91805 1.25034 0.97445 1.01002 0.96143 1.70031 1.32136 1.26530 1.25856 0.86334 0.82882 0.79951 0.77828 1.21429 1.21581 1.20510 1.20679 0.86406 0.98303 0.90160 1.22059 1.00039 0.92046 1.02545 1.20802 0.93327 0.97542 1.01262 0.91304 0.91562 0.91621 0.86343 0.91273 0.91625 0.91462 0.86311 0.88165 0.88284 0.90002 0.90075 0.90385 0.89822 0.93019 0.91744 0.96393 0.92654 0.93632 0.89244 0.96416 0.92833 0.91960 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.27 9.36 -39.58 -0.37 -1.64 16 4 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 5 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 6 C -0.11 -1.29 9.36 -39.58 -0.37 -1.66 16 7 C -0.05 -0.66 4.37 -104.62 -0.46 -1.11 16 8 C -0.10 -1.06 5.58 -29.03 -0.16 -1.22 16 9 C 0.53 7.93 8.05 -10.98 -0.09 7.84 16 10 O -0.54 -10.28 16.76 5.55 0.09 -10.19 16 11 N -0.64 -9.05 3.44 -180.22 -0.62 -9.67 16 12 C 0.12 1.85 7.62 -3.15 -0.02 1.83 16 13 C -0.07 -1.11 0.77 -154.41 -0.12 -1.23 16 14 C 0.10 1.19 7.75 -3.15 -0.02 1.16 16 15 C -0.11 -1.75 5.22 -26.72 -0.14 -1.89 16 16 C 0.15 2.98 6.38 -3.66 -0.02 2.95 16 17 N -0.59 -14.16 2.97 -172.51 -0.51 -14.68 16 18 C -0.25 -6.73 9.56 -15.06 -0.14 -6.87 16 19 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 20 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 21 N -0.90 -25.59 11.22 55.49 0.62 -24.96 16 22 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 C 0.17 3.81 5.21 -3.91 -0.02 3.79 16 27 C -0.13 -2.15 5.24 -26.98 -0.14 -2.29 16 28 C -0.11 -1.28 9.36 -39.59 -0.37 -1.65 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 40 H 0.08 1.42 7.41 -51.93 -0.38 1.03 16 41 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.05 0.80 8.01 -51.93 -0.42 0.38 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 46 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.09 2.27 5.98 -51.92 -0.31 1.96 16 49 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 50 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 52 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 414.51 15.07 6.25 6.25 Total: -1.00 -32.14 414.51 -11.29 -43.43 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -9.04 Total: -0.30 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.05 Total: -6.08 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.51 Total: -49.31 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.14 -11.29 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050645293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.856 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds