Wall clock time and date at job start Wed Apr 1 2020 01:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 119.99649 * 2 1 4 4 C 1.38233 * 119.99756 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00025 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00526 * 0.02562 * 4 3 2 7 7 C 1.38247 * 119.99530 * 359.95528 * 6 4 3 8 8 C 1.50699 * 119.99749 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.47143 * 89.99882 * 8 7 6 10 10 O 1.21284 * 119.99895 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99716 * 179.97438 * 9 8 7 12 12 C 1.47666 * 134.45183 * 180.02562 * 11 9 8 13 13 C 1.53511 * 85.97696 * 204.27772 * 12 11 9 14 14 C 1.47661 * 134.45901 * 359.94880 * 11 9 8 15 15 C 1.52678 * 113.57081 * 91.01646 * 13 12 11 16 16 C 1.53332 * 109.10899 * 73.81117 * 15 13 12 17 17 N 1.46878 * 108.76300 * 52.40554 * 16 15 13 18 18 C 1.36942 * 120.46612 * 124.47682 * 17 16 15 19 19 H 1.07995 * 119.99541 * 331.55754 * 18 17 16 20 20 C 1.38808 * 119.99991 * 151.83908 * 18 17 16 21 21 N 1.31615 * 120.00070 * 342.22560 * 20 18 17 22 22 Si 1.86804 * 119.99766 * 162.22409 * 20 18 17 23 23 H 1.48496 * 109.46872 * 90.00294 * 22 20 18 24 24 H 1.48500 * 109.46904 * 210.00085 * 22 20 18 25 25 H 1.48496 * 109.47110 * 329.99821 * 22 20 18 26 26 C 1.46886 * 119.06696 * 304.74054 * 17 16 15 27 27 C 1.52668 * 113.56318 * 222.23305 * 13 12 11 28 28 C 1.38227 * 119.99901 * 0.27612 * 7 6 4 29 29 H 1.08996 * 109.47184 * 90.00536 * 1 2 3 30 30 H 1.09004 * 109.46705 * 210.00263 * 1 2 3 31 31 H 1.08991 * 109.47532 * 330.00310 * 1 2 3 32 32 H 1.08001 * 120.00082 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47604 * 270.02393 * 5 4 3 34 34 H 1.09004 * 109.46650 * 30.02874 * 5 4 3 35 35 H 1.08999 * 109.46913 * 150.01980 * 5 4 3 36 36 H 1.07995 * 120.00623 * 179.97438 * 6 4 3 37 37 H 1.09002 * 109.47122 * 329.99706 * 8 7 6 38 38 H 1.09002 * 109.46745 * 210.00090 * 8 7 6 39 39 H 1.09000 * 113.79346 * 90.01535 * 12 11 9 40 40 H 1.09001 * 113.79382 * 318.54421 * 12 11 9 41 41 H 1.09007 * 113.78835 * 41.45255 * 14 11 9 42 42 H 1.08993 * 113.79356 * 269.98662 * 14 11 9 43 43 H 1.08995 * 109.53071 * 313.91735 * 15 13 12 44 44 H 1.09003 * 109.52565 * 193.70201 * 15 13 12 45 45 H 1.08997 * 109.59136 * 292.61845 * 16 15 13 46 46 H 1.09003 * 109.58453 * 172.18620 * 16 15 13 47 47 H 0.97003 * 120.00256 * 180.02562 * 21 20 18 48 48 H 1.09011 * 109.58604 * 175.04276 * 26 17 16 49 49 H 1.08997 * 109.59165 * 295.47702 * 26 17 16 50 50 H 1.09002 * 109.53118 * 46.08387 * 27 13 12 51 51 H 1.09001 * 109.53276 * 166.30072 * 27 13 12 52 52 H 1.08001 * 120.00115 * 179.72394 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 6 4.2717 0.0002 0.0005 7 6 3.5805 -1.1971 0.0009 8 6 4.3341 -2.5021 0.0015 9 6 4.5852 -2.9366 1.4226 10 8 4.1906 -2.2539 2.3441 11 7 5.2474 -4.0843 1.6693 12 6 5.6588 -4.7978 2.8949 13 6 6.7533 -5.4345 2.0270 14 6 5.8508 -5.1327 0.8225 15 6 8.0628 -4.6495 2.0225 16 6 8.7734 -4.8511 3.3662 17 7 8.8834 -6.2916 3.6311 18 6 10.1043 -6.8611 3.8769 19 1 10.9977 -6.4272 3.4527 20 6 10.1929 -7.9994 4.6663 21 7 9.1934 -8.3326 5.4551 22 14 11.7307 -9.0584 4.6090 23 1 12.6999 -8.5789 5.6267 24 1 11.3703 -10.4703 4.8951 25 1 12.3441 -8.9677 3.2597 26 6 7.6662 -7.1137 3.6229 27 6 6.9476 -6.9263 2.2869 28 6 2.1983 -1.1971 -0.0044 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5137 32 1 1.6581 2.1325 -0.0004 33 1 4.5156 2.8166 -1.0278 34 1 3.7448 3.2622 0.5135 35 1 5.2863 2.3723 0.5139 36 1 5.3517 0.0002 0.0005 37 1 5.2866 -2.3719 -0.5123 38 1 3.7451 -3.2620 -0.5121 39 1 4.9176 -5.5089 3.2595 40 1 6.0432 -4.1430 3.6769 41 1 6.3877 -4.7439 -0.0429 42 1 5.1667 -5.9432 0.5716 43 1 7.8521 -3.5901 1.8770 44 1 8.7007 -5.0096 1.2153 45 1 8.1961 -4.3766 4.1597 46 1 9.7694 -4.4104 3.3225 47 1 9.2554 -9.1279 6.0071 48 1 7.9331 -8.1631 3.7484 49 1 7.0092 -6.8019 4.4349 50 1 5.9763 -7.4197 2.3216 51 1 7.5495 -7.3600 1.4884 52 1 1.6583 -2.1324 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050645293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:52 Heat of formation + Delta-G solvation = 14.319185 kcal Electronic energy + Delta-G solvation = -29679.076632 eV Core-core repulsion = 25836.732741 eV Total energy + Delta-G solvation = -3842.343891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.86736 -40.64707 -39.33417 -37.47025 -34.49375 -34.38016 -34.20078 -32.26568 -31.46081 -29.85886 -28.32798 -27.83048 -27.56724 -26.93234 -25.80930 -23.94993 -22.67792 -21.91833 -21.63079 -20.09812 -19.47733 -18.41943 -17.80607 -17.29533 -17.07912 -16.85159 -16.66748 -16.45264 -15.67026 -15.41864 -15.20102 -15.08440 -14.96120 -14.81502 -14.48483 -14.01601 -14.00425 -13.85233 -13.84180 -13.76215 -13.39548 -13.35462 -13.17427 -13.02700 -12.92917 -12.89257 -12.56106 -12.53917 -12.34655 -12.26854 -12.01552 -11.90870 -11.86205 -11.80030 -11.35150 -11.29951 -11.21712 -10.71751 -10.47286 -9.68041 -9.51143 -9.42676 -8.63353 -7.84990 -5.30318 0.40058 0.47466 1.48004 1.49625 1.59223 1.62968 1.87259 2.53306 2.79308 3.26640 3.43523 3.57452 3.67225 3.74935 3.83603 3.89858 3.94103 4.09296 4.22381 4.25310 4.34803 4.41036 4.46707 4.51147 4.51978 4.59272 4.60944 4.63307 4.68313 4.69463 4.74143 4.80308 4.84237 4.84577 4.88629 4.94064 4.99300 5.04156 5.06250 5.16263 5.21384 5.27504 5.35887 5.37666 5.38243 5.56093 5.61396 5.64208 5.68142 5.72164 5.82454 6.15221 6.42549 6.77052 7.15166 7.18417 7.89982 8.40801 9.20714 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.002044 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.925841 B =13695.471414 C =14196.666683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.094 4.094 5 C -0.112 4.112 6 C -0.131 4.131 7 C -0.071 4.071 8 C -0.086 4.086 9 C 0.529 3.471 10 O -0.590 6.590 11 N -0.640 5.640 12 C 0.111 3.889 13 C -0.076 4.076 14 C 0.121 3.879 15 C -0.092 4.092 16 C 0.142 3.858 17 N -0.607 5.607 18 C -0.260 4.260 19 H 0.065 0.935 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.268 1.268 26 C 0.175 3.825 27 C -0.111 4.111 28 C -0.130 4.130 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.002 0.998 46 H 0.051 0.949 47 H 0.249 0.751 48 H 0.055 0.945 49 H -0.008 1.008 50 H 0.078 0.922 51 H 0.067 0.933 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.739 14.450 -18.430 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.094 4.094 5 C -0.168 4.168 6 C -0.149 4.149 7 C -0.072 4.072 8 C -0.125 4.125 9 C 0.321 3.679 10 O -0.471 6.471 11 N -0.374 5.374 12 C -0.012 4.012 13 C -0.077 4.077 14 C -0.001 4.001 15 C -0.131 4.131 16 C 0.017 3.983 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.793 3.207 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.193 1.193 26 C 0.049 3.951 27 C -0.150 4.150 28 C -0.148 4.148 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.020 0.980 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.010 0.990 50 H 0.097 0.903 51 H 0.086 0.914 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.054 14.879 -17.890 27.713 hybrid contribution 0.895 -0.790 1.094 1.619 sum -14.159 14.089 -16.795 26.097 Atomic orbital electron populations 1.20809 0.89475 1.03259 1.03193 1.20214 0.97445 0.92923 0.98794 1.21171 0.93632 0.98254 1.02180 1.20204 0.94393 0.95970 0.98845 1.20815 0.99739 0.93089 1.03172 1.21056 0.99963 0.92023 1.01902 1.19487 0.93966 0.94178 0.99547 1.20631 1.03486 0.96057 0.92369 1.20853 0.75614 0.79371 0.92075 1.90702 1.52765 1.55188 1.48439 1.50185 1.55669 1.20561 1.11013 1.23200 0.95127 0.93265 0.89582 1.21892 0.94002 0.95811 0.95961 1.23553 0.93104 0.88484 0.94926 1.21555 0.94785 0.98460 0.98324 1.20989 0.97868 0.84965 0.94508 1.44274 1.03827 1.02653 1.82335 1.19481 0.86702 1.09191 1.23679 0.91761 1.25774 1.00297 1.02360 0.96196 1.70191 1.34078 1.26822 1.26941 0.85321 0.79483 0.77869 0.78027 1.21585 1.21885 1.19313 1.20519 0.85932 0.95938 0.92685 1.21826 1.00502 0.93824 0.98878 1.21049 0.93527 0.98359 1.01876 0.89803 0.91530 0.90730 0.84451 0.89817 0.90678 0.91694 0.85972 0.85932 0.85606 0.89512 0.93037 0.87319 0.86999 0.91754 0.90762 0.98043 0.93082 0.94170 0.92665 0.99035 0.90317 0.91432 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 2 C -0.09 -1.87 5.88 -19.87 -0.12 -1.98 16 3 C -0.13 -2.61 9.36 22.27 0.21 -2.40 16 4 C -0.09 -1.93 5.88 -19.87 -0.12 -2.05 16 5 C -0.11 -1.65 10.01 71.24 0.71 -0.93 16 6 C -0.13 -2.98 9.36 22.27 0.21 -2.77 16 7 C -0.07 -1.62 4.37 -19.87 -0.09 -1.71 16 8 C -0.09 -1.64 5.58 29.10 0.16 -1.48 16 9 C 0.53 14.90 8.05 87.66 0.71 15.61 16 10 O -0.59 -22.66 16.76 -3.04 -0.05 -22.71 16 11 N -0.64 -16.54 3.44 -842.48 -2.90 -19.44 16 12 C 0.11 3.40 7.62 86.32 0.66 4.06 16 13 C -0.08 -2.11 0.77 -52.03 -0.04 -2.15 16 14 C 0.12 2.30 7.75 86.32 0.67 2.96 16 15 C -0.09 -2.86 5.22 30.60 0.16 -2.70 16 16 C 0.14 5.86 6.38 86.42 0.55 6.41 16 17 N -0.61 -29.70 2.97 -699.70 -2.08 -31.78 16 18 C -0.26 -14.08 9.56 84.03 0.80 -13.27 16 19 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16 20 C -0.05 -2.81 4.89 84.86 0.41 -2.40 16 21 N -0.93 -54.82 11.22 21.65 0.24 -54.58 16 22 Si 0.96 44.27 29.59 68.60 2.03 46.30 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 C 0.17 7.99 5.21 86.26 0.45 8.44 16 27 C -0.11 -3.56 5.24 30.44 0.16 -3.40 16 28 C -0.13 -2.85 9.36 22.27 0.21 -2.64 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.90 8.09 -2.39 -0.02 0.89 16 31 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.95 8.09 -2.38 -0.02 0.93 16 35 H 0.06 0.97 8.09 -2.39 -0.02 0.96 16 36 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.12 1.78 8.09 -2.39 -0.02 1.76 16 38 H 0.13 1.71 8.08 -2.39 -0.02 1.69 16 39 H 0.09 2.55 8.07 -2.39 -0.02 2.53 16 40 H 0.05 1.87 7.41 -2.39 -0.02 1.85 16 41 H 0.11 1.52 8.09 -2.38 -0.02 1.50 16 42 H 0.11 1.63 8.09 -2.39 -0.02 1.61 16 43 H 0.06 1.85 8.01 -2.39 -0.02 1.83 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.00 0.07 7.49 -2.39 -0.02 0.05 16 46 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 47 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 48 H 0.05 2.89 5.98 -2.38 -0.01 2.88 16 49 H -0.01 -0.42 8.07 -2.39 -0.02 -0.44 16 50 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 51 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 52 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -73.37 414.51 4.55 -68.82 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.88 Total: 16.61 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 6.42 Total: -3.22 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -4.73 Total: -105.80 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.37 4.55 -68.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050645293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.140 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds