Wall clock time and date at job start Wed Apr 1 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47504 * 2 1 4 4 C 1.38241 * 119.99803 * 89.99812 * 3 2 1 5 5 C 1.38238 * 119.99949 * 180.02562 * 4 3 2 6 6 C 1.38236 * 119.99596 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99686 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47243 * 89.99982 * 7 6 5 9 9 O 1.21283 * 119.99998 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00382 * 179.97438 * 8 7 6 11 11 C 1.47162 * 135.99762 * 359.63704 * 10 8 7 12 12 C 1.52664 * 87.96182 * 206.73036 * 11 10 8 13 13 C 1.47156 * 135.99971 * 179.97438 * 10 8 7 14 14 C 1.52552 * 113.91181 * 88.15557 * 12 11 10 15 15 C 1.53355 * 109.13253 * 190.30948 * 14 12 11 16 16 N 1.46886 * 108.74548 * 307.75946 * 15 14 12 17 17 C 1.36946 * 120.45787 * 235.64470 * 16 15 14 18 18 H 1.07995 * 120.00160 * 28.43378 * 17 16 15 19 19 C 1.38811 * 119.99610 * 208.43588 * 17 16 15 20 20 N 1.31623 * 120.00109 * 17.65975 * 19 17 16 21 21 Si 1.86801 * 119.99775 * 197.65195 * 19 17 16 22 22 H 1.48502 * 109.47077 * 60.00456 * 21 19 17 23 23 H 1.48501 * 109.47087 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47173 * 300.00323 * 21 19 17 25 25 C 1.46890 * 119.07889 * 55.62658 * 16 15 14 26 26 C 1.52560 * 114.25227 * 220.75213 * 12 11 10 27 27 C 1.38231 * 120.00423 * 0.25082 * 6 5 4 28 28 C 1.38229 * 120.00005 * 270.02356 * 3 2 1 29 29 H 1.09004 * 109.47059 * 300.00197 * 1 2 3 30 30 H 1.08997 * 109.47082 * 59.99640 * 1 2 3 31 31 H 1.08995 * 109.47849 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47059 * 239.99802 * 2 1 3 33 33 H 1.09003 * 109.46864 * 119.99965 * 2 1 3 34 34 H 1.07997 * 119.99974 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.00065 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47187 * 329.99907 * 7 6 5 37 37 H 1.09001 * 109.47010 * 209.99701 * 7 6 5 38 38 H 1.08998 * 113.49403 * 321.43139 * 11 10 8 39 39 H 1.09005 * 113.49019 * 91.93787 * 11 10 8 40 40 H 1.09000 * 113.49507 * 268.06812 * 13 10 8 41 41 H 1.09003 * 113.49151 * 38.58637 * 13 10 8 42 42 H 1.09007 * 109.52610 * 310.20221 * 14 12 11 43 43 H 1.08996 * 109.52938 * 70.40894 * 14 12 11 44 44 H 1.08995 * 109.59280 * 187.97610 * 15 14 12 45 45 H 1.09007 * 109.59311 * 67.53407 * 15 14 12 46 46 H 0.97003 * 119.99712 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.58980 * 184.59127 * 25 16 15 48 48 H 1.08993 * 109.59623 * 64.13799 * 25 16 15 49 49 H 1.08998 * 109.52294 * 289.73824 * 26 12 11 50 50 H 1.09000 * 109.52821 * 49.94847 * 26 12 11 51 51 H 1.08002 * 120.00535 * 179.72489 * 27 6 5 52 52 H 1.07998 * 120.00119 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7232 3.3759 1.1973 6 6 2.9527 4.0278 0.0001 7 6 3.4540 5.4490 0.0001 8 6 4.9610 5.4501 -0.0005 9 8 5.5681 4.4002 -0.0013 10 7 5.6341 6.6177 -0.0011 11 6 5.2771 8.0454 -0.0079 12 6 6.6156 8.3209 -0.6882 13 6 7.0484 7.0243 -0.0013 14 6 6.5655 8.2322 -2.2104 15 6 7.9953 8.2689 -2.7634 16 7 8.6885 9.4363 -2.2028 17 6 9.2610 10.3665 -3.0289 18 1 8.8571 10.5330 -4.0166 19 6 10.3605 11.0953 -2.5967 20 7 11.0650 10.6755 -1.5673 21 14 10.8402 12.6719 -3.4764 22 1 9.7169 13.6405 -3.4042 23 1 12.0406 13.2560 -2.8259 24 1 11.1449 12.3722 -4.8985 25 6 8.7587 9.5923 -0.7439 26 6 7.3343 9.5655 -0.1765 27 6 2.7168 3.3781 -1.1971 28 6 2.2624 2.0725 -1.1971 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0824 1.5634 2.1325 35 1 2.9028 3.8851 2.1326 36 1 3.0906 5.9624 0.8903 37 1 3.0900 5.9626 -0.8897 38 1 4.4166 8.2751 -0.6363 39 1 5.1994 8.4785 0.9894 40 1 7.4567 7.1772 0.9977 41 1 7.6818 6.3930 -0.6245 42 1 6.0845 7.2995 -2.5053 43 1 6.0000 9.0759 -2.6060 44 1 7.9650 8.3487 -3.8500 45 1 8.5218 7.3586 -2.4762 46 1 11.8336 11.1847 -1.2655 47 1 9.2313 10.5440 -0.5005 48 1 9.3379 8.7741 -0.3163 49 1 6.7960 10.4561 -0.5007 50 1 7.3763 9.5401 0.9124 51 1 2.8919 3.8890 -2.1324 52 1 2.0824 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050682702.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:07 Heat of formation + Delta-G solvation = 35.103112 kcal Electronic energy + Delta-G solvation = -29440.106916 eV Core-core repulsion = 25598.664283 eV Total energy + Delta-G solvation = -3841.442632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -40.81506 -39.74763 -38.17408 -35.90216 -34.79708 -32.53440 -31.58955 -31.05653 -30.59728 -29.76384 -28.01814 -26.62251 -25.78239 -24.17755 -23.31533 -22.88755 -22.38474 -21.05772 -20.68639 -19.08463 -18.02037 -17.00649 -16.54818 -16.39340 -16.05174 -15.62154 -15.40451 -15.11782 -14.82236 -14.29527 -14.03147 -13.93049 -13.79016 -13.59697 -13.52808 -13.41296 -13.11942 -13.01688 -12.65465 -12.40664 -12.25573 -12.11740 -11.90876 -11.84005 -11.54601 -11.44558 -11.42576 -11.08344 -11.04164 -11.00562 -10.72811 -10.49736 -10.33654 -10.09828 -9.90263 -9.80981 -9.63080 -9.37715 -9.01952 -8.65362 -8.54052 -8.46047 -6.67138 -5.80173 -3.22759 1.16441 1.30659 2.70947 2.93959 3.37529 3.43631 3.44561 3.63744 4.44596 4.48081 4.51638 4.56970 4.61314 4.67287 4.80384 4.86380 5.04599 5.05467 5.13983 5.23115 5.24522 5.27456 5.36669 5.37589 5.45076 5.48982 5.52495 5.57756 5.58668 5.65434 5.66152 5.79329 5.85729 5.93781 5.94717 5.96725 6.06086 6.09519 6.25830 6.27665 6.44069 6.46090 6.47107 6.55923 6.60593 6.64686 6.80522 6.87817 6.95028 7.31674 7.63185 7.78492 7.87755 8.25305 8.44727 9.20502 9.83854 10.40295 11.27965 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.034162 B = 0.001870 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.433244 B =14972.853052 C =15229.068025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.067 4.067 7 C -0.096 4.096 8 C 0.540 3.460 9 O -0.537 6.537 10 N -0.644 5.644 11 C 0.100 3.900 12 C -0.075 4.075 13 C 0.114 3.886 14 C -0.106 4.106 15 C 0.147 3.853 16 N -0.590 5.590 17 C -0.254 4.254 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.171 3.829 26 C -0.124 4.124 27 C -0.101 4.101 28 C -0.116 4.116 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.018 0.982 46 H 0.254 0.746 47 H 0.090 0.910 48 H 0.018 0.982 49 H 0.062 0.938 50 H 0.053 0.947 51 H 0.120 0.880 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.212 -13.378 5.931 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.067 4.067 7 C -0.135 4.135 8 C 0.329 3.671 9 O -0.414 6.414 10 N -0.380 5.380 11 C -0.023 4.023 12 C -0.076 4.076 13 C -0.008 4.008 14 C -0.145 4.145 15 C 0.020 3.980 16 N -0.312 5.312 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.045 3.955 26 C -0.164 4.164 27 C -0.119 4.119 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.036 0.964 49 H 0.081 0.919 50 H 0.072 0.928 51 H 0.138 0.862 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.840 -14.093 5.992 25.862 hybrid contribution 0.354 0.909 -0.285 1.016 sum -20.486 -13.184 5.708 25.021 Atomic orbital electron populations 1.21745 0.94790 1.01585 1.02192 1.20538 0.96076 0.92800 1.02827 1.19866 0.99324 0.96108 0.93258 1.20934 1.00430 0.94729 0.97448 1.20940 0.98881 0.94913 0.97304 1.19276 0.99090 0.94734 0.93640 1.20594 0.92476 0.95400 1.05066 1.20009 0.89025 0.81831 0.76212 1.90728 1.70186 1.30307 1.50200 1.49720 1.10166 1.05260 1.72835 1.23210 0.99402 0.79033 1.00633 1.21652 0.94027 0.95464 0.96477 1.23061 0.83123 0.94089 1.00516 1.21708 1.00363 1.00359 0.92074 1.20882 0.89903 0.90460 0.96735 1.44011 1.63280 1.22349 1.01597 1.19143 1.07602 1.13082 0.98510 0.91798 1.25037 0.95460 1.00348 0.98710 1.70025 1.18061 1.38137 1.28367 0.86386 0.77523 0.83800 0.79147 1.21048 1.21672 1.20922 1.20790 0.89845 1.01898 0.82986 1.22072 1.00648 0.95205 0.98498 1.20972 0.98650 0.94889 0.97396 1.20950 1.00324 0.94694 0.97481 0.92596 0.92568 0.92494 0.91079 0.91119 0.86274 0.86351 0.88272 0.88138 0.90770 0.89883 0.90045 0.90421 0.93051 0.91713 0.92652 0.96410 0.93576 0.89168 0.96359 0.91879 0.92846 0.86202 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.90 37.16 0.37 -0.55 16 2 C -0.09 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.09 -0.84 5.13 -104.63 -0.54 -1.38 16 4 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 5 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 6 C -0.07 -0.78 4.37 -104.62 -0.46 -1.24 16 7 C -0.10 -1.02 5.66 -29.04 -0.16 -1.19 16 8 C 0.54 7.98 8.07 -10.99 -0.09 7.89 16 9 O -0.54 -10.21 16.81 5.56 0.09 -10.12 16 10 N -0.64 -9.08 3.46 -185.30 -0.64 -9.72 16 11 C 0.10 1.19 7.56 -8.36 -0.06 1.12 16 12 C -0.08 -1.13 0.83 -155.15 -0.13 -1.26 16 13 C 0.11 1.77 7.57 -8.20 -0.06 1.71 16 14 C -0.11 -1.74 5.26 -26.78 -0.14 -1.88 16 15 C 0.15 2.99 6.41 -3.65 -0.02 2.97 16 16 N -0.59 -14.14 2.96 -172.18 -0.51 -14.65 16 17 C -0.25 -6.76 9.56 -15.06 -0.14 -6.90 16 18 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 19 C 0.00 0.08 4.89 -17.43 -0.09 0.00 16 20 N -0.90 -25.55 11.21 55.49 0.62 -24.93 16 21 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.17 3.81 5.27 -3.65 -0.02 3.79 16 26 C -0.12 -2.10 5.31 -26.77 -0.14 -2.24 16 27 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 28 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 41 H 0.08 1.36 7.53 -51.93 -0.39 0.97 16 42 H 0.05 0.80 7.95 -51.93 -0.41 0.39 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 45 H 0.02 0.38 7.60 -51.93 -0.39 -0.01 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.09 2.28 5.97 -51.92 -0.31 1.97 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 51 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 52 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 414.95 15.07 6.25 6.25 Total: -1.00 -31.82 414.95 -11.66 -43.48 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -9.06 Total: -0.35 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -3.39 Total: -6.16 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.53 Total: -49.30 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.82 -11.66 -43.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050682702.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.582 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds