Wall clock time and date at job start Wed Apr 1 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47504 * 2 1 4 4 C 1.38241 * 119.99803 * 89.99812 * 3 2 1 5 5 C 1.38238 * 119.99949 * 180.02562 * 4 3 2 6 6 C 1.38236 * 119.99596 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99686 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47243 * 89.99982 * 7 6 5 9 9 O 1.21283 * 119.99998 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00382 * 179.97438 * 8 7 6 11 11 C 1.47162 * 135.99762 * 359.63704 * 10 8 7 12 12 C 1.52664 * 87.96182 * 206.73036 * 11 10 8 13 13 C 1.47156 * 135.99971 * 179.97438 * 10 8 7 14 14 C 1.52552 * 113.91181 * 88.15557 * 12 11 10 15 15 C 1.53355 * 109.13253 * 190.30948 * 14 12 11 16 16 N 1.46886 * 108.74548 * 307.75946 * 15 14 12 17 17 C 1.36946 * 120.45787 * 235.64470 * 16 15 14 18 18 H 1.07995 * 120.00160 * 28.43378 * 17 16 15 19 19 C 1.38811 * 119.99610 * 208.43588 * 17 16 15 20 20 N 1.31623 * 120.00109 * 17.65975 * 19 17 16 21 21 Si 1.86801 * 119.99775 * 197.65195 * 19 17 16 22 22 H 1.48502 * 109.47077 * 60.00456 * 21 19 17 23 23 H 1.48501 * 109.47087 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47173 * 300.00323 * 21 19 17 25 25 C 1.46890 * 119.07889 * 55.62658 * 16 15 14 26 26 C 1.52560 * 114.25227 * 220.75213 * 12 11 10 27 27 C 1.38231 * 120.00423 * 0.25082 * 6 5 4 28 28 C 1.38229 * 120.00005 * 270.02356 * 3 2 1 29 29 H 1.09004 * 109.47059 * 300.00197 * 1 2 3 30 30 H 1.08997 * 109.47082 * 59.99640 * 1 2 3 31 31 H 1.08995 * 109.47849 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47059 * 239.99802 * 2 1 3 33 33 H 1.09003 * 109.46864 * 119.99965 * 2 1 3 34 34 H 1.07997 * 119.99974 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.00065 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47187 * 329.99907 * 7 6 5 37 37 H 1.09001 * 109.47010 * 209.99701 * 7 6 5 38 38 H 1.08998 * 113.49403 * 321.43139 * 11 10 8 39 39 H 1.09005 * 113.49019 * 91.93787 * 11 10 8 40 40 H 1.09000 * 113.49507 * 268.06812 * 13 10 8 41 41 H 1.09003 * 113.49151 * 38.58637 * 13 10 8 42 42 H 1.09007 * 109.52610 * 310.20221 * 14 12 11 43 43 H 1.08996 * 109.52938 * 70.40894 * 14 12 11 44 44 H 1.08995 * 109.59280 * 187.97610 * 15 14 12 45 45 H 1.09007 * 109.59311 * 67.53407 * 15 14 12 46 46 H 0.97003 * 119.99712 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.58980 * 184.59127 * 25 16 15 48 48 H 1.08993 * 109.59623 * 64.13799 * 25 16 15 49 49 H 1.08998 * 109.52294 * 289.73824 * 26 12 11 50 50 H 1.09000 * 109.52821 * 49.94847 * 26 12 11 51 51 H 1.08002 * 120.00535 * 179.72489 * 27 6 5 52 52 H 1.07998 * 120.00119 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7232 3.3759 1.1973 6 6 2.9527 4.0278 0.0001 7 6 3.4540 5.4490 0.0001 8 6 4.9610 5.4501 -0.0005 9 8 5.5681 4.4002 -0.0013 10 7 5.6341 6.6177 -0.0011 11 6 5.2771 8.0454 -0.0079 12 6 6.6156 8.3209 -0.6882 13 6 7.0484 7.0243 -0.0013 14 6 6.5655 8.2322 -2.2104 15 6 7.9953 8.2689 -2.7634 16 7 8.6885 9.4363 -2.2028 17 6 9.2610 10.3665 -3.0289 18 1 8.8571 10.5330 -4.0166 19 6 10.3605 11.0953 -2.5967 20 7 11.0650 10.6755 -1.5673 21 14 10.8402 12.6719 -3.4764 22 1 9.7169 13.6405 -3.4042 23 1 12.0406 13.2560 -2.8259 24 1 11.1449 12.3722 -4.8985 25 6 8.7587 9.5923 -0.7439 26 6 7.3343 9.5655 -0.1765 27 6 2.7168 3.3781 -1.1971 28 6 2.2624 2.0725 -1.1971 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0824 1.5634 2.1325 35 1 2.9028 3.8851 2.1326 36 1 3.0906 5.9624 0.8903 37 1 3.0900 5.9626 -0.8897 38 1 4.4166 8.2751 -0.6363 39 1 5.1994 8.4785 0.9894 40 1 7.4567 7.1772 0.9977 41 1 7.6818 6.3930 -0.6245 42 1 6.0845 7.2995 -2.5053 43 1 6.0000 9.0759 -2.6060 44 1 7.9650 8.3487 -3.8500 45 1 8.5218 7.3586 -2.4762 46 1 11.8336 11.1847 -1.2655 47 1 9.2313 10.5440 -0.5005 48 1 9.3379 8.7741 -0.3163 49 1 6.7960 10.4561 -0.5007 50 1 7.3763 9.5401 0.9124 51 1 2.8919 3.8890 -2.1324 52 1 2.0824 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050682702.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:04 Heat of formation + Delta-G solvation = 19.438274 kcal Electronic energy + Delta-G solvation = -29440.786194 eV Core-core repulsion = 25598.664283 eV Total energy + Delta-G solvation = -3842.121911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.98922 -40.59016 -39.33461 -37.53282 -35.51036 -34.26544 -32.60137 -31.97657 -31.81114 -31.34410 -29.14862 -27.82800 -26.81962 -25.86097 -24.09359 -23.89113 -23.64739 -22.57784 -21.53635 -20.27005 -19.46045 -18.39831 -17.86694 -17.33838 -17.03042 -16.81762 -16.49441 -16.39047 -15.95109 -15.62325 -15.41651 -15.13083 -14.91307 -14.66453 -14.54217 -14.51642 -14.19934 -13.97035 -13.88228 -13.68834 -13.37897 -13.10084 -12.97040 -12.91871 -12.91206 -12.75687 -12.53282 -12.52042 -12.27711 -12.06813 -12.02361 -11.79692 -11.71088 -11.65586 -11.37350 -11.26430 -11.14464 -10.76769 -10.46814 -9.79715 -9.69421 -9.41714 -8.62953 -7.84339 -5.29965 0.38332 0.52850 1.49556 1.50931 1.58053 1.62269 1.88436 2.53919 2.84211 3.25701 3.39913 3.60237 3.70107 3.76057 3.85489 3.90141 3.96271 4.08839 4.14387 4.19174 4.28165 4.45452 4.45970 4.49799 4.51344 4.57197 4.59547 4.62469 4.63813 4.73640 4.73885 4.76510 4.83663 4.84733 4.94098 5.04213 5.05071 5.08903 5.15997 5.17480 5.22075 5.22932 5.37456 5.38398 5.38683 5.51676 5.56373 5.67708 5.68421 5.73606 5.83021 6.13700 6.42899 6.79889 7.14142 7.18948 7.90321 8.41311 9.20989 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.034162 B = 0.001870 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.433244 B =14972.853052 C =15229.068025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.128 4.128 5 C -0.116 4.116 6 C -0.086 4.086 7 C -0.084 4.084 8 C 0.536 3.464 9 O -0.590 6.590 10 N -0.643 5.643 11 C 0.119 3.881 12 C -0.078 4.078 13 C 0.108 3.892 14 C -0.091 4.091 15 C 0.143 3.857 16 N -0.607 5.607 17 C -0.263 4.263 18 H 0.065 0.935 19 C -0.049 4.049 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.279 1.279 25 C 0.174 3.826 26 C -0.108 4.108 27 C -0.118 4.118 28 C -0.129 4.129 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.050 0.950 45 H 0.000 1.000 46 H 0.249 0.751 47 H 0.056 0.944 48 H -0.008 1.008 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.125 0.875 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.320 -12.973 6.385 28.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.146 4.146 5 C -0.134 4.134 6 C -0.087 4.087 7 C -0.124 4.124 8 C 0.327 3.673 9 O -0.470 6.470 10 N -0.378 5.378 11 C -0.002 4.002 12 C -0.079 4.079 13 C -0.016 4.016 14 C -0.130 4.130 15 C 0.017 3.983 16 N -0.330 5.330 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.244 4.244 20 N -0.580 5.580 21 Si 0.794 3.206 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.205 1.205 25 C 0.049 3.951 26 C -0.147 4.147 27 C -0.136 4.136 28 C -0.147 4.147 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.018 0.982 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.010 0.990 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.143 0.857 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.994 -13.674 6.439 28.358 hybrid contribution 1.392 0.676 -0.460 1.614 sum -22.602 -12.998 5.979 26.750 Atomic orbital electron populations 1.21715 0.93818 1.02417 1.01988 1.20587 0.96850 0.91392 1.03366 1.20198 0.98698 0.97213 0.93060 1.21231 1.00215 0.94761 0.98389 1.21203 0.99003 0.95475 0.97721 1.19491 0.99711 0.95557 0.93912 1.20616 0.88904 0.95471 1.07370 1.20784 0.90603 0.81000 0.74866 1.90705 1.71534 1.32197 1.52583 1.49775 1.09319 1.06375 1.72291 1.23232 0.97857 0.76966 1.02186 1.21539 0.96665 0.94081 0.95625 1.23037 0.84049 0.93999 1.00467 1.21504 0.97128 1.01298 0.93064 1.20983 0.92120 0.88527 0.96657 1.44275 1.63530 1.23045 1.02142 1.19472 1.07486 1.13460 0.98888 0.91769 1.25767 0.95694 1.03227 0.99753 1.70188 1.18546 1.39234 1.30027 0.85376 0.77011 0.80275 0.77973 1.20081 1.22221 1.20522 1.20637 0.93048 0.98960 0.82484 1.21830 0.96716 0.96361 0.99798 1.21205 0.99086 0.95518 0.97780 1.21222 1.00316 0.94720 0.98442 0.92716 0.92850 0.91148 0.90649 0.90494 0.84616 0.85305 0.85542 0.85939 0.87750 0.87036 0.89275 0.93598 0.91892 0.90724 0.93117 0.98162 0.94161 0.92541 0.98971 0.91367 0.90210 0.85657 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.90 71.98 0.71 -0.82 16 2 C -0.08 -1.13 6.06 29.85 0.18 -0.95 16 3 C -0.09 -1.71 5.13 -19.87 -0.10 -1.81 16 4 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 5 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16 6 C -0.09 -1.88 4.37 -19.87 -0.09 -1.97 16 7 C -0.08 -1.56 5.66 29.10 0.16 -1.39 16 8 C 0.54 14.89 8.07 87.66 0.71 15.60 16 9 O -0.59 -22.41 16.81 -3.04 -0.05 -22.46 16 10 N -0.64 -16.54 3.46 -858.56 -2.97 -19.51 16 11 C 0.12 2.28 7.56 83.22 0.63 2.91 16 12 C -0.08 -2.18 0.83 -52.59 -0.04 -2.22 16 13 C 0.11 3.25 7.57 83.33 0.63 3.89 16 14 C -0.09 -2.84 5.26 30.56 0.16 -2.67 16 15 C 0.14 5.91 6.41 86.43 0.55 6.46 16 16 N -0.61 -29.64 2.96 -698.65 -2.07 -31.70 16 17 C -0.26 -14.21 9.56 84.03 0.80 -13.41 16 18 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 19 C -0.05 -2.69 4.89 84.86 0.42 -2.28 16 20 N -0.93 -54.67 11.21 21.65 0.24 -54.42 16 21 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 C 0.17 7.95 5.27 86.42 0.46 8.40 16 26 C -0.11 -3.44 5.31 30.57 0.16 -3.27 16 27 C -0.12 -2.55 9.70 22.27 0.22 -2.34 16 28 C -0.13 -2.56 9.70 22.27 0.22 -2.35 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 33 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 34 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.13 1.63 8.09 -2.39 -0.02 1.61 16 37 H 0.12 1.72 8.08 -2.39 -0.02 1.70 16 38 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 39 H 0.11 1.63 8.09 -2.38 -0.02 1.61 16 40 H 0.09 2.55 8.06 -2.39 -0.02 2.53 16 41 H 0.05 1.67 7.53 -2.39 -0.02 1.65 16 42 H 0.06 1.83 7.95 -2.38 -0.02 1.81 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 44 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 45 H 0.00 0.02 7.60 -2.38 -0.02 0.00 16 46 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 47 H 0.06 2.95 5.97 -2.38 -0.01 2.94 16 48 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 51 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 52 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -72.46 414.95 4.27 -68.20 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.87 Total: 16.35 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 6.21 Total: -2.66 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -4.80 Total: -105.64 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -72.46 4.27 -68.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050682702.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.637 kcal (2) G-P(sol) polarization free energy of solvation -72.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds