Wall clock time and date at job start Wed Apr 1 2020 02:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 115.55325 * 2 1 4 4 C 1.38230 * 120.00156 * 83.58851 * 3 2 1 5 5 C 1.38239 * 119.99887 * 179.76819 * 4 3 2 6 6 C 1.38244 * 119.99961 * 0.48658 * 5 4 3 7 7 C 1.38238 * 119.99935 * 359.78783 * 6 5 4 8 8 C 1.38239 * 119.99631 * 263.86696 * 3 2 1 9 9 C 1.53003 * 117.49871 * 214.28404 * 2 1 3 10 10 C 1.53002 * 117.49404 * 145.66366 * 2 1 3 11 11 H 1.08996 * 117.50485 * 359.97438 * 10 2 1 12 12 C 1.50706 * 117.49872 * 214.97576 * 10 2 1 13 13 O 1.21276 * 120.00072 * 276.80478 * 12 10 2 14 14 N 1.34774 * 119.99394 * 96.80534 * 12 10 2 15 15 C 1.46506 * 119.99613 * 180.02562 * 14 12 10 16 16 H 1.08998 * 108.44733 * 327.30347 * 15 14 12 17 17 C 1.52578 * 108.51026 * 209.76589 * 15 14 12 18 18 C 1.50878 * 109.35555 * 153.73364 * 17 15 14 19 19 C 1.54290 * 110.23655 * 91.79945 * 18 17 15 20 20 N 1.47607 * 111.94406 * 319.69516 * 19 18 17 21 21 C 1.36937 * 118.64634 * 137.77258 * 20 19 18 22 22 H 1.07999 * 120.00757 * 211.04134 * 21 20 19 23 23 C 1.38814 * 119.99365 * 30.77223 * 21 20 19 24 24 N 1.31615 * 120.00428 * 17.80417 * 23 21 20 25 25 Si 1.86802 * 119.99909 * 197.80200 * 23 21 20 26 26 H 1.48498 * 109.47113 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47020 * 119.99978 * 25 23 21 28 28 H 1.48495 * 109.47501 * 240.00070 * 25 23 21 29 29 C 1.44582 * 122.71129 * 317.50309 * 20 19 18 30 30 C 1.47085 * 108.51358 * 84.99844 * 15 14 12 31 31 H 1.08998 * 109.47140 * 274.33638 * 1 2 3 32 32 H 1.09000 * 109.46787 * 34.33639 * 1 2 3 33 33 H 1.08997 * 109.47431 * 154.33006 * 1 2 3 34 34 H 1.07995 * 120.00387 * 0.02562 * 4 3 2 35 35 H 1.08006 * 120.00056 * 180.25217 * 5 4 3 36 36 H 1.07996 * 119.99773 * 179.76736 * 6 5 4 37 37 H 1.07991 * 119.99931 * 179.97438 * 7 6 5 38 38 H 1.07997 * 120.00062 * 359.97438 * 8 3 2 39 39 H 1.08999 * 117.49708 * 145.02445 * 9 2 1 40 40 H 1.08999 * 117.49380 * 0.02562 * 9 2 1 41 41 H 0.96997 * 120.00508 * 359.97438 * 14 12 10 42 42 H 1.08998 * 109.48498 * 273.69702 * 17 15 14 43 43 H 1.08998 * 109.48839 * 33.74031 * 17 15 14 44 44 H 1.09000 * 109.36192 * 212.07868 * 18 17 15 45 45 H 1.09001 * 109.37140 * 331.69367 * 18 17 15 46 46 H 1.08997 * 109.13964 * 199.01378 * 19 18 17 47 47 H 1.08993 * 108.96300 * 80.26310 * 19 18 17 48 48 H 0.97003 * 120.00584 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.44524 * 211.01840 * 29 20 19 50 50 H 1.08995 * 109.44821 * 330.94302 * 29 20 19 51 51 H 1.09004 * 109.32824 * 63.79284 * 30 15 14 52 52 H 1.08991 * 109.33112 * 304.31639 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3595 0.0000 4 6 2.3575 2.0408 1.1896 5 6 2.9582 3.2859 1.1901 6 6 3.3722 3.8541 -0.0003 7 6 3.1895 3.1752 -1.1905 8 6 2.5935 1.9279 -1.1904 9 6 2.2364 -1.1214 -0.7645 10 6 2.2363 -1.1207 0.7655 11 1 1.6111 -1.8577 1.2695 12 6 3.5292 -0.7806 1.4612 13 8 4.5705 -0.7805 0.8396 14 7 3.5281 -0.4766 2.7743 15 6 4.7849 -0.1455 3.4505 16 1 5.5873 -0.7198 2.9876 17 6 4.6735 -0.5662 4.9129 18 6 6.0515 -0.8506 5.4577 19 6 6.6451 0.4215 6.0981 20 7 6.3439 1.6300 5.3059 21 6 5.9710 2.7709 5.9650 22 1 5.2945 3.4695 5.4952 23 6 6.4581 3.0268 7.2394 24 7 7.5222 2.3882 7.6778 25 14 5.6034 4.2776 8.3323 26 1 4.4394 4.8519 7.6108 27 1 5.1358 3.6119 9.5746 28 1 6.5551 5.3631 8.6805 29 6 6.4319 1.6604 3.8631 30 6 5.0595 1.2857 3.2510 31 1 -0.3633 0.0777 1.0247 32 1 -0.3633 0.8486 -0.5797 33 1 -0.3634 -0.9262 -0.4451 34 1 2.0308 1.5986 2.1191 35 1 3.1006 3.8164 2.1200 36 1 3.8380 4.8284 -0.0003 37 1 3.5125 3.6193 -2.1204 38 1 2.4511 1.3974 -2.1202 39 1 3.1715 -0.8758 -1.2678 40 1 1.6111 -1.8588 -1.2678 41 1 2.6952 -0.4764 3.2714 42 1 4.2135 0.2371 5.4883 43 1 4.0602 -1.4642 4.9872 44 1 5.9877 -1.6376 6.2091 45 1 6.7003 -1.1800 4.6461 46 1 7.7265 0.3105 6.1770 47 1 6.2293 0.5414 7.0985 48 1 7.8624 2.5667 8.5685 49 1 6.7131 2.6620 3.5377 50 1 7.1849 0.9461 3.5303 51 1 4.2775 1.8736 3.7315 52 1 5.0684 1.5059 2.1836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052574745.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:47 Heat of formation + Delta-G solvation = 29.536617 kcal Electronic energy + Delta-G solvation = -31471.714420 eV Core-core repulsion = 27630.030406 eV Total energy + Delta-G solvation = -3841.684014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -40.62407 -39.05305 -37.87735 -36.63432 -34.68432 -32.42043 -31.55263 -30.83387 -30.73073 -30.02954 -28.76648 -26.14546 -24.70664 -23.72592 -23.17728 -22.83896 -22.19869 -20.27949 -20.00291 -19.54651 -19.05381 -17.47380 -16.65942 -16.40813 -15.82189 -15.25291 -15.13762 -14.93778 -14.76820 -14.18284 -14.08768 -13.80835 -13.59647 -13.48607 -13.35980 -13.25435 -12.94257 -12.75607 -12.67425 -12.44899 -12.29175 -11.92736 -11.89391 -11.39244 -11.25784 -11.13526 -11.08706 -10.84296 -10.69696 -10.54220 -10.39058 -10.24162 -10.14972 -10.02843 -9.88562 -9.75697 -9.55917 -9.43053 -8.86055 -8.69398 -8.66984 -8.39395 -6.57066 -5.76405 -3.23330 1.38035 1.47658 2.68186 3.30104 3.36026 3.44765 3.46227 3.62710 3.82094 4.38739 4.51274 4.52007 4.63184 4.83874 5.00753 5.05604 5.07956 5.19487 5.25597 5.35620 5.41993 5.44330 5.47690 5.49391 5.57414 5.66212 5.67114 5.69907 5.78360 5.84293 5.95717 6.05767 6.06857 6.08777 6.11599 6.27249 6.38185 6.50718 6.52302 6.53558 6.59706 6.62634 6.73860 6.77370 6.87193 6.91896 6.98944 7.04792 7.11336 7.39708 7.67031 7.78612 7.85604 8.49342 8.52047 9.26679 9.93314 10.41950 11.30152 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.003532 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.867417 B = 7926.556108 C = 8978.679343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.065 4.065 3 C -0.055 4.055 4 C -0.098 4.098 5 C -0.110 4.110 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.108 4.108 9 C -0.135 4.135 10 C -0.180 4.180 11 H 0.124 0.876 12 C 0.544 3.456 13 O -0.539 6.539 14 N -0.724 5.724 15 C 0.162 3.838 16 H 0.072 0.928 17 C -0.111 4.111 18 C -0.140 4.140 19 C 0.179 3.821 20 N -0.587 5.587 21 C -0.260 4.260 22 H 0.062 0.938 23 C 0.009 3.991 24 N -0.898 5.898 25 Si 0.895 3.105 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.291 1.291 29 C 0.163 3.837 30 C -0.148 4.148 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.394 0.606 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.026 0.974 47 H 0.064 0.936 48 H 0.252 0.748 49 H 0.047 0.953 50 H 0.031 0.969 51 H 0.060 0.940 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.547 -5.767 -15.156 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.066 4.066 3 C -0.055 4.055 4 C -0.116 4.116 5 C -0.128 4.128 6 C -0.137 4.137 7 C -0.140 4.140 8 C -0.126 4.126 9 C -0.173 4.173 10 C -0.201 4.201 11 H 0.142 0.858 12 C 0.329 3.671 13 O -0.415 6.415 14 N -0.373 5.373 15 C 0.060 3.940 16 H 0.090 0.910 17 C -0.149 4.149 18 C -0.179 4.179 19 C 0.054 3.946 20 N -0.309 5.309 21 C -0.390 4.390 22 H 0.080 0.920 23 C -0.190 4.190 24 N -0.542 5.542 25 Si 0.725 3.275 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.218 1.218 29 C 0.034 3.966 30 C -0.189 4.189 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.227 0.773 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.049 0.951 51 H 0.078 0.922 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.661 -5.775 -15.430 21.403 hybrid contribution -0.753 0.565 1.062 1.419 sum -14.414 -5.210 -14.369 21.009 Atomic orbital electron populations 1.21357 0.90641 1.02356 1.02438 1.20190 0.94474 0.87992 1.03919 1.18915 0.99248 0.93734 0.93624 1.20932 0.98709 0.94785 0.97189 1.21185 0.97739 0.95539 0.98296 1.21170 0.99770 1.00052 0.92682 1.21075 0.99699 0.95181 0.98082 1.20878 0.98881 0.95506 0.97345 1.23173 1.02741 0.99436 0.91900 1.22497 0.98223 1.03224 0.96144 0.85773 1.19431 0.89175 0.76314 0.82149 1.90682 1.33237 1.52361 1.65260 1.46407 1.11377 1.70070 1.09475 1.20003 0.84906 0.97025 0.92102 0.91030 1.21234 0.98506 1.00588 0.94555 1.22009 0.95663 1.00306 0.99957 1.21006 0.97029 0.82420 0.94139 1.43617 1.79642 1.07875 0.99754 1.19148 1.21364 0.99648 0.98793 0.92035 1.25096 0.95771 0.98283 0.99847 1.70084 1.21248 1.44787 1.18066 0.86354 0.79255 0.81082 0.80840 1.20271 1.21642 1.21766 1.20577 0.92219 0.98591 0.85232 1.21816 1.02134 0.94979 0.99989 0.91768 0.91577 0.91895 0.86419 0.85786 0.86212 0.86319 0.86399 0.87408 0.87859 0.77333 0.90180 0.93270 0.92655 0.93376 0.95555 0.91770 0.93780 0.93469 0.95088 0.92170 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.84 37.16 0.37 -0.46 16 2 C -0.07 -0.64 2.18 -155.66 -0.34 -0.98 16 3 C -0.06 -0.66 4.36 -104.63 -0.46 -1.12 16 4 C -0.10 -1.26 8.52 -39.58 -0.34 -1.60 16 5 C -0.11 -1.45 10.05 -39.58 -0.40 -1.85 16 6 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 7 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 8 C -0.11 -1.27 9.43 -39.58 -0.37 -1.64 16 9 C -0.14 -1.35 9.11 -26.73 -0.24 -1.59 16 10 C -0.18 -1.93 5.90 -91.77 -0.54 -2.47 16 11 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 12 C 0.54 7.92 5.61 -10.98 -0.06 7.86 16 13 O -0.54 -10.11 15.87 5.56 0.09 -10.02 16 14 N -0.72 -9.93 4.33 -56.81 -0.25 -10.18 16 15 C 0.16 2.71 1.96 -70.98 -0.14 2.57 16 16 H 0.07 1.36 6.65 -51.93 -0.35 1.01 16 17 C -0.11 -1.84 5.00 -28.01 -0.14 -1.98 16 18 C -0.14 -2.57 5.71 -27.12 -0.15 -2.73 16 19 C 0.18 4.16 4.72 -2.76 -0.01 4.15 16 20 N -0.59 -14.18 2.24 -171.87 -0.38 -14.57 16 21 C -0.26 -6.89 9.37 -15.06 -0.14 -7.03 16 22 H 0.06 1.63 7.89 -52.49 -0.41 1.21 16 23 C 0.01 0.26 4.78 -17.43 -0.08 0.17 16 24 N -0.90 -25.75 11.47 55.49 0.64 -25.12 16 25 Si 0.89 21.31 29.59 -169.99 -5.03 16.28 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.16 3.49 5.65 -4.08 -0.02 3.47 16 30 C -0.15 -2.71 5.20 -28.58 -0.15 -2.85 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 34 H 0.12 1.46 7.62 -52.49 -0.40 1.06 16 35 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 1.18 8.02 -52.49 -0.42 0.75 16 39 H 0.11 1.30 7.70 -51.93 -0.40 0.90 16 40 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 41 H 0.39 4.42 8.61 -40.82 -0.35 4.07 16 42 H 0.08 1.49 7.49 -51.93 -0.39 1.10 16 43 H 0.05 0.70 8.05 -51.93 -0.42 0.29 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.88 7.31 -51.93 -0.38 0.50 16 46 H 0.03 0.67 8.00 -51.93 -0.42 0.26 16 47 H 0.06 1.64 6.72 -51.93 -0.35 1.29 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.05 1.05 7.99 -51.93 -0.41 0.63 16 50 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 51 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 52 H 0.05 1.02 7.95 -51.93 -0.41 0.61 16 LS Contribution 409.42 15.07 6.17 6.17 Total: -1.00 -31.18 409.42 -11.66 -42.84 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.87 Total: 6.37 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -4.02 Total: -11.78 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.01 Total: -49.86 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.18 -11.66 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052574745.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.378 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds