Wall clock time and date at job start Wed Apr 1 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 112.84785 * 2 1 4 4 C 1.53778 * 113.61503 * 228.70023 * 2 1 3 5 5 C 1.53784 * 87.08278 * 220.01693 * 4 2 1 6 6 C 1.53782 * 113.61617 * 131.19941 * 2 1 3 7 7 H 1.09000 * 113.61131 * 254.61187 * 6 2 1 8 8 C 1.50699 * 113.61383 * 25.43085 * 6 2 1 9 9 O 1.21286 * 119.99610 * 43.23100 * 8 6 2 10 10 N 1.34770 * 119.99977 * 223.23204 * 8 6 2 11 11 C 1.46500 * 119.99730 * 180.02562 * 10 8 6 12 12 C 1.53009 * 109.46932 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.77240 * 294.24337 * 12 11 10 14 14 C 1.52789 * 109.82060 * 173.45826 * 12 11 10 15 15 C 1.50600 * 110.85303 * 192.93729 * 14 12 11 16 16 C 1.38977 * 117.61459 * 199.60683 * 15 14 12 17 17 C 1.37915 * 120.58470 * 180.42967 * 16 15 14 18 18 C 1.38263 * 119.82656 * 0.03403 * 17 16 15 19 19 C 1.37957 * 119.71530 * 359.79074 * 18 17 16 20 20 C 1.37685 * 122.87148 * 19.71480 * 15 14 12 21 21 C 1.50811 * 122.35219 * 359.26871 * 20 15 14 22 22 N 1.46682 * 109.67591 * 11.03956 * 21 20 15 23 23 C 1.36938 * 121.35106 * 135.71997 * 22 21 20 24 24 H 1.08003 * 119.99880 * 207.81146 * 23 22 21 25 25 C 1.38806 * 119.99807 * 27.81268 * 23 22 21 26 26 N 1.31622 * 120.00156 * 10.18978 * 25 23 22 27 27 Si 1.86809 * 120.00053 * 190.19357 * 25 23 22 28 28 H 1.48498 * 109.46622 * 95.08314 * 27 25 23 29 29 H 1.48492 * 109.47099 * 215.08356 * 27 25 23 30 30 H 1.48499 * 109.46936 * 335.08761 * 27 25 23 31 31 H 1.08997 * 109.46696 * 282.22388 * 1 2 3 32 32 H 1.09004 * 109.47155 * 42.22399 * 1 2 3 33 33 H 1.08998 * 109.47000 * 162.22536 * 1 2 3 34 34 H 1.09003 * 109.47153 * 191.19186 * 3 2 1 35 35 H 1.08995 * 109.47407 * 311.19844 * 3 2 1 36 36 H 1.09004 * 109.46562 * 71.19937 * 3 2 1 37 37 H 1.09004 * 113.61289 * 334.55861 * 4 2 1 38 38 H 1.08999 * 113.62170 * 105.38698 * 4 2 1 39 39 H 1.09001 * 113.61395 * 270.88381 * 5 4 2 40 40 H 1.08996 * 113.61975 * 139.97728 * 5 4 2 41 41 H 0.97006 * 120.00150 * 359.97438 * 10 8 6 42 42 H 1.08998 * 109.47410 * 59.99925 * 11 10 8 43 43 H 1.08994 * 109.47240 * 299.99261 * 11 10 8 44 44 H 1.09003 * 109.20286 * 313.28951 * 14 12 11 45 45 H 1.08994 * 109.20139 * 72.58288 * 14 12 11 46 46 H 1.07996 * 119.71088 * 0.45214 * 16 15 14 47 47 H 1.07998 * 120.08444 * 180.02562 * 17 16 15 48 48 H 1.08002 * 120.14192 * 179.75889 * 18 17 16 49 49 H 1.07996 * 119.74350 * 180.02562 * 19 18 17 50 50 H 1.08995 * 109.43633 * 250.97623 * 21 20 15 51 51 H 1.09002 * 109.43345 * 131.10115 * 21 20 15 52 52 H 0.97003 * 119.99593 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9299 -1.0585 5 6 3.1924 -1.3136 0.0011 6 6 2.1461 -0.9281 1.0602 7 1 2.5638 -0.3971 1.9155 8 6 1.2453 -2.0676 1.4617 9 8 0.6314 -2.6824 0.6154 10 7 1.1220 -2.4035 2.7610 11 6 0.2468 -3.5116 3.1512 12 6 0.2877 -3.6830 4.6711 13 1 1.2842 -3.9989 4.9798 14 6 -0.7421 -4.7259 5.1028 15 6 -0.9477 -4.6909 6.5943 16 6 -1.5102 -5.8116 7.1935 17 6 -1.7339 -5.8420 8.5540 18 6 -1.3971 -4.7491 9.3310 19 6 -0.8352 -3.6366 8.7394 20 6 -0.6061 -3.6062 7.3705 21 6 0.0204 -2.3634 6.7896 22 7 -0.0564 -2.4097 5.3255 23 6 -0.4325 -1.3130 4.5968 24 1 -0.9101 -1.4406 3.6365 25 6 -0.1997 -0.0374 5.0922 26 7 0.5554 0.1271 6.1576 27 14 -0.9583 1.4457 4.2469 28 1 -2.2321 1.8022 4.9218 29 1 -0.0191 2.5934 4.3239 30 1 -1.2267 1.1204 2.8230 31 1 -0.3632 0.2176 1.0044 32 1 -0.3634 0.7610 -0.6906 33 1 -0.3633 -0.9786 -0.3137 34 1 3.1942 1.3534 -0.1995 35 1 1.6414 2.0077 -0.7732 36 1 1.9599 1.8734 0.9729 37 1 1.4945 -1.7548 -1.3473 38 1 2.5638 -0.4006 -1.9149 39 1 4.0711 -0.6686 0.0005 40 1 3.4444 -2.3740 0.0021 41 1 1.6133 -1.9120 3.4378 42 1 0.5879 -4.4298 2.6731 43 1 -0.7744 -3.2961 2.8370 44 1 -1.6901 -4.5209 4.6053 45 1 -0.3926 -5.7165 4.8122 46 1 -1.7742 -6.6663 6.5885 47 1 -2.1711 -6.7173 9.0113 48 1 -1.5737 -4.7659 10.3963 49 1 -0.5716 -2.7828 9.3459 50 1 1.0647 -2.3063 7.0964 51 1 -0.5125 -1.4848 7.1532 52 1 0.7184 1.0186 6.5035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054049961.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:40 Heat of formation + Delta-G solvation = 23.707087 kcal Electronic energy + Delta-G solvation = -31427.746218 eV Core-core repulsion = 27585.809417 eV Total energy + Delta-G solvation = -3841.936801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.49967 -39.35402 -37.66362 -36.30533 -33.65708 -32.90594 -31.43237 -30.60826 -30.21966 -28.99924 -27.28022 -26.71895 -25.62451 -24.70628 -22.85274 -22.36784 -21.56240 -21.15595 -20.11654 -19.11387 -18.13396 -16.53546 -16.25250 -16.17019 -15.38928 -15.22777 -14.66322 -14.52530 -14.44960 -14.35897 -14.12555 -14.05201 -13.68755 -13.23903 -13.03845 -12.70700 -12.62042 -12.58486 -12.42719 -12.19533 -11.99522 -11.87973 -11.65461 -11.55429 -11.17172 -11.11766 -10.94401 -10.90204 -10.80849 -10.75995 -10.69166 -10.51312 -10.20405 -10.01815 -9.87769 -9.78397 -9.70359 -9.00952 -8.79066 -8.27008 -8.19179 -7.86175 -6.83726 -5.93360 -3.37594 1.85610 1.93314 3.17740 3.29166 3.37499 3.38910 3.84839 4.27734 4.35886 4.66361 4.84412 4.99672 5.05887 5.14474 5.21734 5.28376 5.35517 5.44207 5.46006 5.56285 5.60143 5.65413 5.71271 5.78952 5.88029 5.90545 5.93781 5.96976 5.98881 6.04404 6.06815 6.09733 6.15093 6.18452 6.21248 6.29822 6.34329 6.37325 6.51671 6.54353 6.61595 6.68095 6.77962 6.82808 6.93302 6.94999 7.12911 7.17202 7.22036 7.49239 7.62980 7.71274 8.23917 8.34366 8.94509 9.05942 9.65342 10.23647 11.15528 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.003736 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.167153 B = 7492.346933 C = 8789.605292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.128 4.128 5 C -0.119 4.119 6 C -0.130 4.130 7 H 0.091 0.909 8 C 0.531 3.469 9 O -0.561 6.561 10 N -0.690 5.690 11 C 0.137 3.863 12 C 0.158 3.842 13 H 0.041 0.959 14 C -0.090 4.090 15 C -0.068 4.068 16 C -0.128 4.128 17 C -0.140 4.140 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.077 4.077 21 C 0.207 3.793 22 N -0.588 5.588 23 C -0.242 4.242 24 H 0.073 0.927 25 C 0.008 3.992 26 N -0.906 5.906 27 Si 0.893 3.107 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.272 1.272 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.416 0.584 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.111 0.889 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.117 0.883 50 H 0.042 0.958 51 H 0.098 0.902 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -4.723 -3.820 6.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.165 4.165 5 C -0.157 4.157 6 C -0.151 4.151 7 H 0.109 0.891 8 C 0.317 3.683 9 O -0.442 6.442 10 N -0.340 5.340 11 C 0.013 3.987 12 C 0.050 3.950 13 H 0.059 0.941 14 C -0.130 4.130 15 C -0.068 4.068 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.079 4.079 21 C 0.082 3.918 22 N -0.312 5.312 23 C -0.372 4.372 24 H 0.090 0.910 25 C -0.191 4.191 26 N -0.551 5.551 27 Si 0.723 3.277 28 H -0.216 1.216 29 H -0.216 1.216 30 H -0.197 1.197 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.253 0.747 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.129 0.871 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.135 0.865 50 H 0.059 0.941 51 H 0.116 0.884 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.479 -4.974 -4.336 7.049 hybrid contribution -0.335 1.099 0.384 1.212 sum 2.144 -3.875 -3.952 5.935 Atomic orbital electron populations 1.21939 0.93799 1.02673 1.02091 1.21569 0.95891 0.93757 0.95180 1.21621 1.00205 0.94566 1.02163 1.23124 0.97973 0.99535 0.95884 1.22683 0.96148 1.01427 0.95480 1.22526 0.97549 0.96465 0.98579 0.89085 1.19795 0.82023 0.83934 0.82566 1.90571 1.48188 1.54735 1.50679 1.45943 1.46184 1.34486 1.07426 1.21210 0.94889 0.88538 0.94092 1.20720 0.95394 0.88174 0.90675 0.94092 1.20883 1.00933 0.99143 0.92014 1.19487 0.98674 0.93183 0.95446 1.21126 1.00653 0.97982 0.94828 1.20849 1.02486 0.98425 0.94098 1.20951 1.00655 0.94164 0.99092 1.21115 1.00187 0.98146 0.94766 1.21027 0.96243 0.97416 0.93190 1.19796 0.97474 0.91529 0.83007 1.44041 1.78773 1.07381 1.00969 1.19138 1.31926 0.83444 1.02646 0.90971 1.25017 0.98185 0.97585 0.98292 1.69954 1.38868 1.21617 1.24619 0.86411 0.78763 0.82866 0.79675 1.21594 1.21620 1.19732 0.92244 0.93415 0.90642 0.92482 0.92337 0.92114 0.88657 0.92190 0.89819 0.91392 0.74668 0.92619 0.91686 0.90842 0.91904 0.87106 0.87138 0.87006 0.86485 0.94066 0.88424 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.25 37.16 0.31 -2.16 16 2 C -0.06 -0.94 1.33 -153.69 -0.20 -1.14 16 3 C -0.13 -1.64 9.06 37.16 0.34 -1.30 16 4 C -0.13 -1.73 6.74 -25.92 -0.17 -1.91 16 5 C -0.12 -1.57 7.29 -25.91 -0.19 -1.76 16 6 C -0.13 -2.03 3.88 -90.96 -0.35 -2.38 16 7 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 8 C 0.53 9.68 6.31 -10.99 -0.07 9.61 16 9 O -0.56 -11.30 13.38 5.55 0.07 -11.22 16 10 N -0.69 -12.81 4.01 -60.29 -0.24 -13.06 16 11 C 0.14 2.48 4.45 -4.04 -0.02 2.46 16 12 C 0.16 2.93 3.01 -67.63 -0.20 2.73 16 13 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 14 C -0.09 -1.52 5.21 -28.04 -0.15 -1.67 16 15 C -0.07 -1.21 5.76 -104.60 -0.60 -1.81 16 16 C -0.13 -2.00 9.59 -39.43 -0.38 -2.38 16 17 C -0.14 -2.06 10.04 -39.69 -0.40 -2.46 16 18 C -0.13 -1.98 10.05 -39.68 -0.40 -2.38 16 19 C -0.12 -2.14 9.62 -39.46 -0.38 -2.52 16 20 C -0.08 -1.49 5.82 -104.55 -0.61 -2.10 16 21 C 0.21 4.56 4.80 -5.04 -0.02 4.53 16 22 N -0.59 -12.89 2.85 -166.37 -0.47 -13.37 16 23 C -0.24 -5.79 6.98 -15.06 -0.11 -5.90 16 24 H 0.07 1.79 6.18 -52.48 -0.32 1.47 16 25 C 0.01 0.20 5.10 -17.43 -0.09 0.11 16 26 N -0.91 -23.45 11.01 55.49 0.61 -22.84 16 27 Si 0.89 20.47 29.57 -169.99 -5.03 15.44 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.27 -6.16 6.38 56.52 0.36 -5.80 16 31 H 0.06 1.13 7.41 -51.93 -0.38 0.75 16 32 H 0.05 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.07 1.35 6.02 -51.93 -0.31 1.04 16 34 H 0.06 0.63 7.35 -51.93 -0.38 0.25 16 35 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.46 6.73 -51.93 -0.35 1.11 16 38 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.08 0.93 7.66 -51.93 -0.40 0.53 16 40 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 41 H 0.42 8.15 7.30 -40.82 -0.30 7.85 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 1.29 7.31 -51.93 -0.38 0.91 16 44 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 45 H 0.06 0.91 8.11 -51.93 -0.42 0.48 16 46 H 0.11 1.48 8.05 -52.49 -0.42 1.06 16 47 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 48 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 49 H 0.12 1.90 8.05 -52.49 -0.42 1.48 16 50 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.10 2.42 6.42 -51.93 -0.33 2.09 16 52 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -26.55 396.71 -11.43 -37.99 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -8.65 Total: 13.48 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -3.70 Total: -12.41 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.11 Total: -49.26 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.07 Total: -11.22 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -26.55 -11.43 -37.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049961.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.694 kcal (2) G-P(sol) polarization free energy of solvation -26.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds