Wall clock time and date at job start Wed Apr 1 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 112.84785 * 2 1 4 4 C 1.53778 * 113.61503 * 228.70023 * 2 1 3 5 5 C 1.53784 * 87.08278 * 220.01693 * 4 2 1 6 6 C 1.53782 * 113.61617 * 131.19941 * 2 1 3 7 7 H 1.09000 * 113.61131 * 254.61187 * 6 2 1 8 8 C 1.50699 * 113.61383 * 25.43085 * 6 2 1 9 9 O 1.21286 * 119.99610 * 43.23100 * 8 6 2 10 10 N 1.34770 * 119.99977 * 223.23204 * 8 6 2 11 11 C 1.46500 * 119.99730 * 180.02562 * 10 8 6 12 12 C 1.53009 * 109.46932 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.77240 * 294.24337 * 12 11 10 14 14 C 1.52789 * 109.82060 * 173.45826 * 12 11 10 15 15 C 1.50600 * 110.85303 * 192.93729 * 14 12 11 16 16 C 1.38977 * 117.61459 * 199.60683 * 15 14 12 17 17 C 1.37915 * 120.58470 * 180.42967 * 16 15 14 18 18 C 1.38263 * 119.82656 * 0.03403 * 17 16 15 19 19 C 1.37957 * 119.71530 * 359.79074 * 18 17 16 20 20 C 1.37685 * 122.87148 * 19.71480 * 15 14 12 21 21 C 1.50811 * 122.35219 * 359.26871 * 20 15 14 22 22 N 1.46682 * 109.67591 * 11.03956 * 21 20 15 23 23 C 1.36938 * 121.35106 * 135.71997 * 22 21 20 24 24 H 1.08003 * 119.99880 * 207.81146 * 23 22 21 25 25 C 1.38806 * 119.99807 * 27.81268 * 23 22 21 26 26 N 1.31622 * 120.00156 * 10.18978 * 25 23 22 27 27 Si 1.86809 * 120.00053 * 190.19357 * 25 23 22 28 28 H 1.48498 * 109.46622 * 95.08314 * 27 25 23 29 29 H 1.48492 * 109.47099 * 215.08356 * 27 25 23 30 30 H 1.48499 * 109.46936 * 335.08761 * 27 25 23 31 31 H 1.08997 * 109.46696 * 282.22388 * 1 2 3 32 32 H 1.09004 * 109.47155 * 42.22399 * 1 2 3 33 33 H 1.08998 * 109.47000 * 162.22536 * 1 2 3 34 34 H 1.09003 * 109.47153 * 191.19186 * 3 2 1 35 35 H 1.08995 * 109.47407 * 311.19844 * 3 2 1 36 36 H 1.09004 * 109.46562 * 71.19937 * 3 2 1 37 37 H 1.09004 * 113.61289 * 334.55861 * 4 2 1 38 38 H 1.08999 * 113.62170 * 105.38698 * 4 2 1 39 39 H 1.09001 * 113.61395 * 270.88381 * 5 4 2 40 40 H 1.08996 * 113.61975 * 139.97728 * 5 4 2 41 41 H 0.97006 * 120.00150 * 359.97438 * 10 8 6 42 42 H 1.08998 * 109.47410 * 59.99925 * 11 10 8 43 43 H 1.08994 * 109.47240 * 299.99261 * 11 10 8 44 44 H 1.09003 * 109.20286 * 313.28951 * 14 12 11 45 45 H 1.08994 * 109.20139 * 72.58288 * 14 12 11 46 46 H 1.07996 * 119.71088 * 0.45214 * 16 15 14 47 47 H 1.07998 * 120.08444 * 180.02562 * 17 16 15 48 48 H 1.08002 * 120.14192 * 179.75889 * 18 17 16 49 49 H 1.07996 * 119.74350 * 180.02562 * 19 18 17 50 50 H 1.08995 * 109.43633 * 250.97623 * 21 20 15 51 51 H 1.09002 * 109.43345 * 131.10115 * 21 20 15 52 52 H 0.97003 * 119.99593 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9299 -1.0585 5 6 3.1924 -1.3136 0.0011 6 6 2.1461 -0.9281 1.0602 7 1 2.5638 -0.3971 1.9155 8 6 1.2453 -2.0676 1.4617 9 8 0.6314 -2.6824 0.6154 10 7 1.1220 -2.4035 2.7610 11 6 0.2468 -3.5116 3.1512 12 6 0.2877 -3.6830 4.6711 13 1 1.2842 -3.9989 4.9798 14 6 -0.7421 -4.7259 5.1028 15 6 -0.9477 -4.6909 6.5943 16 6 -1.5102 -5.8116 7.1935 17 6 -1.7339 -5.8420 8.5540 18 6 -1.3971 -4.7491 9.3310 19 6 -0.8352 -3.6366 8.7394 20 6 -0.6061 -3.6062 7.3705 21 6 0.0204 -2.3634 6.7896 22 7 -0.0564 -2.4097 5.3255 23 6 -0.4325 -1.3130 4.5968 24 1 -0.9101 -1.4406 3.6365 25 6 -0.1997 -0.0374 5.0922 26 7 0.5554 0.1271 6.1576 27 14 -0.9583 1.4457 4.2469 28 1 -2.2321 1.8022 4.9218 29 1 -0.0191 2.5934 4.3239 30 1 -1.2267 1.1204 2.8230 31 1 -0.3632 0.2176 1.0044 32 1 -0.3634 0.7610 -0.6906 33 1 -0.3633 -0.9786 -0.3137 34 1 3.1942 1.3534 -0.1995 35 1 1.6414 2.0077 -0.7732 36 1 1.9599 1.8734 0.9729 37 1 1.4945 -1.7548 -1.3473 38 1 2.5638 -0.4006 -1.9149 39 1 4.0711 -0.6686 0.0005 40 1 3.4444 -2.3740 0.0021 41 1 1.6133 -1.9120 3.4378 42 1 0.5879 -4.4298 2.6731 43 1 -0.7744 -3.2961 2.8370 44 1 -1.6901 -4.5209 4.6053 45 1 -0.3926 -5.7165 4.8122 46 1 -1.7742 -6.6663 6.5885 47 1 -2.1711 -6.7173 9.0113 48 1 -1.5737 -4.7659 10.3963 49 1 -0.5716 -2.7828 9.3459 50 1 1.0647 -2.3063 7.0964 51 1 -0.5125 -1.4848 7.1532 52 1 0.7184 1.0186 6.5035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054049961.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:38 Heat of formation + Delta-G solvation = 12.180984 kcal Electronic energy + Delta-G solvation = -31428.246027 eV Core-core repulsion = 27585.809417 eV Total energy + Delta-G solvation = -3842.436610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.80448 -40.74189 -39.03983 -37.80982 -35.27557 -34.48154 -32.96706 -31.90819 -31.58366 -30.52867 -28.48196 -27.96512 -27.36490 -26.03345 -24.53766 -23.51613 -22.89959 -22.57079 -21.54599 -20.63623 -19.50856 -18.14137 -17.72641 -17.63133 -16.83329 -16.58383 -16.17852 -16.07871 -15.73793 -15.65856 -15.59233 -15.38019 -15.10769 -14.72986 -14.63422 -14.07399 -14.01518 -13.96556 -13.74282 -13.51373 -13.27768 -13.17195 -13.05331 -13.01981 -12.79308 -12.61119 -12.49119 -12.32196 -12.27234 -12.18011 -12.05537 -11.94316 -11.82247 -11.60706 -11.30176 -11.03479 -10.97668 -10.67091 -10.42851 -9.76592 -9.54021 -9.26592 -8.67298 -7.87072 -5.31065 0.58390 0.62482 1.38718 1.44673 1.50395 1.74858 2.41098 2.50106 2.98087 3.31436 3.47572 3.51034 3.70488 3.79143 3.84384 3.91686 4.10318 4.22680 4.23571 4.25975 4.33292 4.39271 4.41476 4.51159 4.57948 4.66810 4.68612 4.71602 4.73533 4.81462 4.84608 4.86786 4.91665 4.92188 4.98697 5.01826 5.14346 5.19456 5.20190 5.22856 5.26885 5.31675 5.41312 5.43370 5.52170 5.63431 5.66555 5.70079 5.74547 5.74908 6.01731 6.27493 6.35392 6.81030 7.14685 7.44765 7.80177 8.36018 9.19983 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.003736 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.167153 B = 7492.346933 C = 8789.605292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.125 4.125 4 C -0.120 4.120 5 C -0.106 4.106 6 C -0.142 4.142 7 H 0.087 0.913 8 C 0.527 3.473 9 O -0.582 6.582 10 N -0.695 5.695 11 C 0.144 3.856 12 C 0.159 3.841 13 H 0.042 0.958 14 C -0.084 4.084 15 C -0.084 4.084 16 C -0.128 4.128 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.138 4.138 20 C -0.108 4.108 21 C 0.223 3.777 22 N -0.599 5.599 23 C -0.225 4.225 24 H 0.062 0.938 25 C -0.031 4.031 26 N -0.927 5.927 27 Si 0.935 3.065 28 H -0.299 1.299 29 H -0.291 1.291 30 H -0.271 1.271 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.409 0.591 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.140 0.860 47 H 0.149 0.851 48 H 0.143 0.857 49 H 0.114 0.886 50 H 0.014 0.986 51 H 0.061 0.939 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 -6.481 -4.383 8.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.182 4.182 4 C -0.157 4.157 5 C -0.143 4.143 6 C -0.164 4.164 7 H 0.106 0.894 8 C 0.315 3.685 9 O -0.464 6.464 10 N -0.344 5.344 11 C 0.019 3.981 12 C 0.053 3.947 13 H 0.060 0.940 14 C -0.123 4.123 15 C -0.084 4.084 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.156 4.156 20 C -0.110 4.110 21 C 0.098 3.902 22 N -0.323 5.323 23 C -0.355 4.355 24 H 0.079 0.921 25 C -0.227 4.227 26 N -0.574 5.574 27 Si 0.766 3.234 28 H -0.227 1.227 29 H -0.217 1.217 30 H -0.196 1.196 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.246 0.754 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.158 0.842 47 H 0.166 0.834 48 H 0.161 0.839 49 H 0.133 0.867 50 H 0.032 0.968 51 H 0.079 0.921 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.764 -6.756 -4.910 8.797 hybrid contribution -0.495 1.533 0.604 1.720 sum 2.269 -5.223 -4.306 7.139 Atomic orbital electron populations 1.21874 0.95670 1.02138 1.00393 1.21705 0.94462 0.95229 0.95367 1.21620 1.01732 0.92904 1.01928 1.23007 0.97505 0.98583 0.96590 1.22719 0.96276 1.01919 0.93411 1.22635 0.98398 0.95912 0.99432 0.89415 1.20292 0.81936 0.84254 0.82033 1.90555 1.49158 1.55675 1.51035 1.46024 1.46167 1.34638 1.07614 1.21160 0.93836 0.89228 0.93851 1.20838 0.96069 0.87140 0.90633 0.94045 1.20820 0.99846 0.99881 0.91761 1.19659 0.99385 0.93673 0.95702 1.21437 0.99565 0.97770 0.95776 1.21328 1.00691 0.99172 0.93699 1.21307 0.99149 0.93236 1.00795 1.21228 1.00946 0.99356 0.94090 1.20792 0.98789 0.96944 0.94442 1.19347 0.95740 0.92033 0.83094 1.44171 1.78876 1.08074 1.01152 1.19075 1.30373 0.84133 1.01899 0.92077 1.25416 0.99192 0.99104 0.99018 1.70076 1.40374 1.21236 1.25719 0.85741 0.77598 0.81178 0.78925 1.22660 1.21706 1.19591 0.95485 0.91488 0.92493 0.90111 0.90877 0.93551 0.90832 0.89384 0.86877 0.91694 0.75400 0.90729 0.93716 0.91508 0.88679 0.84219 0.83371 0.83945 0.86748 0.96817 0.92075 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 8.25 71.98 0.59 -4.23 16 2 C -0.07 -1.91 1.33 -51.65 -0.07 -1.98 16 3 C -0.12 -2.91 9.06 71.98 0.65 -2.25 16 4 C -0.12 -3.00 6.74 31.12 0.21 -2.80 16 5 C -0.11 -2.55 7.29 31.12 0.23 -2.32 16 6 C -0.14 -4.41 3.88 -11.01 -0.04 -4.46 16 7 H 0.09 2.75 8.04 -2.39 -0.02 2.73 16 8 C 0.53 19.63 6.31 87.66 0.55 20.18 16 9 O -0.58 -23.90 13.38 -3.05 -0.04 -23.94 16 10 N -0.70 -26.63 4.01 -463.06 -1.86 -28.49 16 11 C 0.14 5.29 4.45 86.38 0.38 5.67 16 12 C 0.16 6.01 3.01 44.78 0.13 6.15 16 13 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.08 -2.75 5.21 29.75 0.16 -2.59 16 15 C -0.08 -2.91 5.76 -19.85 -0.11 -3.02 16 16 C -0.13 -3.57 9.59 22.37 0.21 -3.35 16 17 C -0.13 -3.31 10.04 22.20 0.22 -3.09 16 18 C -0.13 -3.51 10.05 22.21 0.22 -3.28 16 19 C -0.14 -4.75 9.62 22.35 0.21 -4.54 16 20 C -0.11 -4.26 5.82 -19.82 -0.12 -4.38 16 21 C 0.22 10.40 4.80 85.63 0.41 10.81 16 22 N -0.60 -27.39 2.85 -680.28 -1.94 -29.33 16 23 C -0.22 -11.23 6.98 84.03 0.59 -10.64 16 24 H 0.06 3.18 6.18 -2.91 -0.02 3.16 16 25 C -0.03 -1.63 5.10 84.86 0.43 -1.19 16 26 N -0.93 -50.52 11.01 21.65 0.24 -50.28 16 27 Si 0.94 43.79 29.57 68.60 2.03 45.82 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 30 H -0.27 -12.49 6.38 99.48 0.63 -11.86 16 31 H 0.03 1.05 7.41 -2.39 -0.02 1.03 16 32 H 0.07 1.92 8.06 -2.38 -0.02 1.90 16 33 H 0.06 2.10 6.02 -2.39 -0.01 2.08 16 34 H 0.08 1.50 7.35 -2.39 -0.02 1.48 16 35 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 36 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.07 2.20 6.73 -2.38 -0.02 2.18 16 38 H 0.09 1.73 8.10 -2.39 -0.02 1.71 16 39 H 0.11 2.09 7.66 -2.39 -0.02 2.08 16 40 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 41 H 0.41 16.74 7.30 -92.70 -0.68 16.06 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.04 1.83 7.31 -2.39 -0.02 1.81 16 44 H 0.07 2.28 8.01 -2.39 -0.02 2.26 16 45 H 0.09 2.49 8.11 -2.39 -0.02 2.47 16 46 H 0.14 3.08 8.05 -2.91 -0.02 3.06 16 47 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 48 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 49 H 0.11 3.86 8.05 -2.91 -0.02 3.84 16 50 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.06 3.25 6.42 -2.39 -0.02 3.23 16 52 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -61.04 396.71 3.46 -57.58 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: 0.16 Total: 39.96 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.88 Total: -11.32 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -3.56 Total: -108.10 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.04 Total: -23.94 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -61.04 3.46 -57.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049961.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.760 kcal (2) G-P(sol) polarization free energy of solvation -61.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds