Wall clock time and date at job start Wed Apr 1 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 112.84766 * 2 1 4 4 C 1.53784 * 113.61758 * 131.19417 * 2 1 3 5 5 C 1.53781 * 87.07794 * 89.11786 * 4 2 1 6 6 C 1.53779 * 87.17320 * 25.39028 * 5 4 2 7 7 H 1.09002 * 113.61440 * 89.16307 * 6 5 4 8 8 C 1.50703 * 113.61638 * 220.05736 * 6 5 4 9 9 O 1.21279 * 120.00012 * 128.01245 * 8 6 5 10 10 N 1.34777 * 120.00159 * 308.01962 * 8 6 5 11 11 C 1.46499 * 120.00043 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.46939 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.76864 * 64.25993 * 12 11 10 14 14 C 1.52799 * 109.77441 * 185.00063 * 12 11 10 15 15 C 1.50599 * 110.85503 * 167.09212 * 14 12 11 16 16 C 1.38977 * 117.62386 * 159.94038 * 15 14 12 17 17 C 1.37905 * 120.58146 * 179.51605 * 16 15 14 18 18 C 1.38266 * 119.82932 * 359.95120 * 17 16 15 19 19 C 1.37948 * 119.71327 * 0.22853 * 18 17 16 20 20 C 1.37672 * 122.86118 * 339.84061 * 15 14 12 21 21 C 1.50814 * 122.33994 * 1.42840 * 20 15 14 22 22 N 1.46678 * 109.68638 * 348.48370 * 21 20 15 23 23 C 1.36932 * 121.34226 * 224.36881 * 22 21 20 24 24 H 1.08001 * 120.00596 * 152.03653 * 23 22 21 25 25 C 1.38824 * 119.99476 * 332.03764 * 23 22 21 26 26 N 1.31613 * 120.00006 * 343.12959 * 25 23 22 27 27 Si 1.86801 * 119.99902 * 163.13604 * 25 23 22 28 28 H 1.48500 * 109.47046 * 59.99286 * 27 25 23 29 29 H 1.48499 * 109.47236 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47077 * 299.99952 * 27 25 23 31 31 H 1.09002 * 109.46688 * 284.24040 * 1 2 3 32 32 H 1.08995 * 109.47484 * 44.24258 * 1 2 3 33 33 H 1.08998 * 109.46807 * 164.24517 * 1 2 3 34 34 H 1.09002 * 109.47155 * 171.69256 * 3 2 1 35 35 H 1.09005 * 109.47116 * 291.69401 * 3 2 1 36 36 H 1.09007 * 109.47421 * 51.69137 * 3 2 1 37 37 H 1.08997 * 113.61094 * 334.57282 * 4 2 1 38 38 H 1.09003 * 113.68913 * 203.67400 * 4 2 1 39 39 H 1.08997 * 113.61785 * 139.97918 * 5 4 2 40 40 H 1.09003 * 113.61510 * 270.80350 * 5 4 2 41 41 H 0.96997 * 119.99805 * 0.02562 * 10 8 6 42 42 H 1.09008 * 109.47003 * 300.00130 * 11 10 8 43 43 H 1.08997 * 109.46922 * 59.99952 * 11 10 8 44 44 H 1.09001 * 109.19981 * 287.44576 * 14 12 11 45 45 H 1.09002 * 109.19863 * 46.78386 * 14 12 11 46 46 H 1.08005 * 119.70809 * 359.54235 * 16 15 14 47 47 H 1.08005 * 120.08706 * 179.97438 * 17 16 15 48 48 H 1.07998 * 120.14271 * 180.20720 * 18 17 16 49 49 H 1.08001 * 119.74717 * 180.02562 * 19 18 17 50 50 H 1.09002 * 109.43679 * 108.55116 * 21 20 15 51 51 H 1.09004 * 109.43059 * 228.46184 * 21 20 15 52 52 H 0.96996 * 120.00232 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 1.0603 5 6 2.0930 -2.0425 0.0020 6 6 2.1448 -0.9317 -1.0602 7 1 3.1575 -0.6532 -1.3518 8 6 1.2427 -1.1829 -2.2410 9 8 0.4577 -0.3297 -2.5967 10 7 1.3083 -2.3558 -2.9017 11 6 0.4310 -2.6002 -4.0492 12 6 0.7050 -3.9961 -4.6123 13 1 0.4420 -4.7509 -3.8711 14 6 -0.1161 -4.2113 -5.8829 15 6 0.3580 -5.4315 -6.6274 16 6 -0.5161 -6.0092 -7.5405 17 6 -0.1411 -7.1224 -8.2629 18 6 1.1153 -7.6700 -8.0799 19 6 1.9835 -7.1009 -7.1715 20 6 1.6052 -5.9833 -6.4398 21 6 2.5925 -5.4264 -5.4450 22 7 2.1286 -4.1196 -4.9671 23 6 2.9851 -3.0571 -4.8548 24 1 2.6099 -2.0487 -4.9488 25 6 4.3357 -3.2762 -4.6203 26 7 4.7457 -4.4468 -4.1799 27 14 5.5711 -1.9096 -4.9295 28 1 5.2427 -0.7422 -4.0724 29 1 6.9366 -2.3937 -4.6040 30 1 5.5157 -1.5062 -6.3576 31 1 -0.3633 0.2528 0.9961 32 1 -0.3634 0.7362 -0.7169 33 1 -0.3633 -0.9891 -0.2790 34 1 3.2023 1.3500 0.1485 35 1 1.9151 1.8923 -0.9549 36 1 1.6781 1.9922 0.8064 37 1 1.4946 -1.1068 1.9156 38 1 3.1592 -0.6495 1.3506 39 1 2.9718 -2.6873 0.0025 40 1 1.1575 -2.6018 0.0034 41 1 1.9359 -3.0384 -2.6169 42 1 -0.6096 -2.5348 -3.7313 43 1 0.6234 -1.8531 -4.8192 44 1 -1.1647 -4.3400 -5.6145 45 1 -0.0156 -3.3376 -6.5269 46 1 -1.4975 -5.5824 -7.6858 47 1 -0.8269 -7.5652 -8.9702 48 1 1.4154 -8.5398 -8.6454 49 1 2.9651 -7.5279 -7.0284 50 1 2.6821 -6.1104 -4.6011 51 1 3.5649 -5.3123 -5.9243 52 1 5.6894 -4.6000 -4.0164 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054049964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:53 Heat of formation + Delta-G solvation = 20.500185 kcal Electronic energy + Delta-G solvation = -31210.585915 eV Core-core repulsion = 27368.510052 eV Total energy + Delta-G solvation = -3842.075863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.36357 -39.35954 -37.73891 -36.37369 -33.67888 -32.89681 -31.46951 -30.73809 -30.05896 -28.97530 -27.24345 -26.93141 -25.60452 -24.74572 -22.86440 -22.37728 -21.57767 -21.13704 -19.97806 -19.08600 -18.11911 -16.83213 -16.25057 -16.03089 -15.50134 -15.23505 -14.99514 -14.59927 -14.41973 -14.25447 -14.00085 -13.86551 -13.51560 -13.35965 -13.03308 -12.87530 -12.63094 -12.60904 -12.41555 -12.08581 -12.02974 -11.74797 -11.68489 -11.57095 -11.40645 -11.17997 -11.03699 -10.90584 -10.85564 -10.72928 -10.61004 -10.53758 -10.23810 -10.17999 -10.01168 -9.90560 -9.70035 -8.92788 -8.74528 -8.27686 -8.16782 -7.88858 -6.83723 -5.94005 -3.35521 1.84261 1.91617 3.29287 3.34015 3.36716 3.40584 3.92497 4.26264 4.37357 4.59526 4.68569 4.90965 4.94597 5.12980 5.21206 5.26848 5.34829 5.38940 5.44619 5.55456 5.58841 5.63267 5.71679 5.75214 5.85227 5.85992 5.91364 5.92655 5.93634 6.03278 6.06122 6.07712 6.12149 6.14976 6.17817 6.27349 6.30882 6.36776 6.38817 6.53247 6.58054 6.60398 6.68691 6.81440 6.91825 6.92617 7.08411 7.14026 7.25311 7.46011 7.58725 7.72590 8.23657 8.38217 8.98693 9.05192 9.66119 10.25024 11.15088 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003661 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.037345 B = 7645.376642 C = 8965.633957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.124 4.124 7 H 0.114 0.886 8 C 0.521 3.479 9 O -0.563 6.563 10 N -0.692 5.692 11 C 0.137 3.863 12 C 0.158 3.842 13 H 0.041 0.959 14 C -0.091 4.091 15 C -0.066 4.066 16 C -0.128 4.128 17 C -0.140 4.140 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.077 4.077 21 C 0.209 3.791 22 N -0.586 5.586 23 C -0.247 4.247 24 H 0.071 0.929 25 C 0.010 3.990 26 N -0.901 5.901 27 Si 0.894 3.106 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.284 1.284 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.415 0.585 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.117 0.883 50 H 0.043 0.957 51 H 0.089 0.911 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 -0.168 4.265 8.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.171 4.171 5 C -0.167 4.167 6 C -0.145 4.145 7 H 0.132 0.868 8 C 0.307 3.693 9 O -0.443 6.443 10 N -0.343 5.343 11 C 0.012 3.988 12 C 0.051 3.949 13 H 0.058 0.942 14 C -0.130 4.130 15 C -0.067 4.067 16 C -0.146 4.146 17 C -0.158 4.158 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.079 4.079 21 C 0.083 3.917 22 N -0.309 5.309 23 C -0.376 4.376 24 H 0.088 0.912 25 C -0.189 4.189 26 N -0.544 5.544 27 Si 0.723 3.277 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.210 1.210 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.253 0.747 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.129 0.871 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.135 0.865 50 H 0.061 0.939 51 H 0.107 0.893 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.168 0.385 4.067 8.250 hybrid contribution 1.198 0.155 -0.409 1.275 sum -5.969 0.540 3.658 7.022 Atomic orbital electron populations 1.21554 0.92711 1.02609 1.00677 1.21682 0.96037 0.94077 0.94405 1.21719 0.99952 0.95593 1.01907 1.23031 1.00989 0.96530 0.96585 1.22827 1.02851 0.96079 0.94958 1.22868 1.00312 0.98595 0.92758 0.86835 1.20256 0.83505 0.81957 0.83591 1.90602 1.40131 1.45052 1.68557 1.45907 1.40244 1.17773 1.30354 1.21196 0.92320 0.96783 0.88451 1.20711 0.86892 0.94221 0.93087 0.94178 1.20891 0.98509 0.95632 0.97976 1.19490 0.93533 0.96611 0.97029 1.21130 0.99271 0.96792 0.97390 1.20854 0.96720 0.97450 1.00755 1.20948 0.94465 1.00123 0.99326 1.21110 0.99615 0.96503 0.96981 1.20968 0.95446 0.94308 0.97165 1.19706 0.93923 0.85952 0.92091 1.44005 1.03105 1.09070 1.74735 1.19025 0.88422 0.86879 1.43278 0.91173 1.24972 0.98064 0.96683 0.99182 1.69993 1.15027 1.22708 1.46717 0.86502 0.80738 0.81818 0.78592 1.20782 1.21610 1.21046 0.93473 0.91090 0.92963 0.92813 0.92118 0.92813 0.91414 0.90064 0.90481 0.89936 0.74728 0.92741 0.91708 0.91891 0.90803 0.87065 0.87110 0.86980 0.86496 0.93910 0.89272 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 7.57 37.16 0.28 -1.34 16 2 C -0.06 -0.83 1.19 -153.61 -0.18 -1.01 16 3 C -0.13 -1.68 9.16 37.16 0.34 -1.34 16 4 C -0.13 -1.56 7.23 -25.92 -0.19 -1.75 16 5 C -0.13 -1.72 6.99 -25.92 -0.18 -1.90 16 6 C -0.12 -1.93 3.68 -90.87 -0.33 -2.27 16 7 H 0.11 1.84 8.10 -51.93 -0.42 1.42 16 8 C 0.52 9.59 6.28 -10.98 -0.07 9.52 16 9 O -0.56 -11.63 14.59 5.56 0.08 -11.55 16 10 N -0.69 -12.89 4.00 -60.29 -0.24 -13.13 16 11 C 0.14 2.50 4.43 -4.04 -0.02 2.49 16 12 C 0.16 2.95 3.00 -67.64 -0.20 2.75 16 13 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 14 C -0.09 -1.53 5.21 -28.04 -0.15 -1.68 16 15 C -0.07 -1.18 5.76 -104.60 -0.60 -1.79 16 16 C -0.13 -1.99 9.59 -39.43 -0.38 -2.36 16 17 C -0.14 -2.03 10.04 -39.69 -0.40 -2.43 16 18 C -0.13 -1.96 10.05 -39.68 -0.40 -2.36 16 19 C -0.12 -2.12 9.62 -39.47 -0.38 -2.50 16 20 C -0.08 -1.49 5.82 -104.55 -0.61 -2.10 16 21 C 0.21 4.57 4.83 -5.04 -0.02 4.55 16 22 N -0.59 -12.88 2.85 -166.38 -0.47 -13.36 16 23 C -0.25 -5.96 7.04 -15.06 -0.11 -6.07 16 24 H 0.07 1.77 6.21 -52.49 -0.33 1.44 16 25 C 0.01 0.26 4.94 -17.43 -0.09 0.17 16 26 N -0.90 -23.30 11.43 55.49 0.63 -22.66 16 27 Si 0.89 20.66 29.59 -169.99 -5.03 15.63 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 30 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.09 7.25 -51.93 -0.38 0.71 16 33 H 0.05 0.76 6.71 -51.93 -0.35 0.41 16 34 H 0.05 0.62 8.01 -51.93 -0.42 0.21 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.09 7.66 -51.93 -0.40 0.69 16 41 H 0.42 8.15 7.27 -40.82 -0.30 7.85 16 42 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.06 1.30 7.25 -51.93 -0.38 0.93 16 44 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 45 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 46 H 0.11 1.47 8.05 -52.48 -0.42 1.05 16 47 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 48 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 49 H 0.12 1.88 8.05 -52.49 -0.42 1.46 16 50 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.09 2.19 6.64 -51.93 -0.34 1.84 16 52 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -26.93 401.11 -11.43 -38.36 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -8.76 Total: 12.09 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.68 Total: -11.41 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.08 Total: -49.15 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -26.93 -11.43 -38.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.858 kcal (2) G-P(sol) polarization free energy of solvation -26.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds