Wall clock time and date at job start Wed Apr 1 2020 02:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 112.84766 * 2 1 4 4 C 1.53784 * 113.61758 * 131.19417 * 2 1 3 5 5 C 1.53781 * 87.07794 * 89.11786 * 4 2 1 6 6 C 1.53779 * 87.17320 * 25.39028 * 5 4 2 7 7 H 1.09002 * 113.61440 * 89.16307 * 6 5 4 8 8 C 1.50703 * 113.61638 * 220.05736 * 6 5 4 9 9 O 1.21279 * 120.00012 * 128.01245 * 8 6 5 10 10 N 1.34777 * 120.00159 * 308.01962 * 8 6 5 11 11 C 1.46499 * 120.00043 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.46939 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.76864 * 64.25993 * 12 11 10 14 14 C 1.52799 * 109.77441 * 185.00063 * 12 11 10 15 15 C 1.50599 * 110.85503 * 167.09212 * 14 12 11 16 16 C 1.38977 * 117.62386 * 159.94038 * 15 14 12 17 17 C 1.37905 * 120.58146 * 179.51605 * 16 15 14 18 18 C 1.38266 * 119.82932 * 359.95120 * 17 16 15 19 19 C 1.37948 * 119.71327 * 0.22853 * 18 17 16 20 20 C 1.37672 * 122.86118 * 339.84061 * 15 14 12 21 21 C 1.50814 * 122.33994 * 1.42840 * 20 15 14 22 22 N 1.46678 * 109.68638 * 348.48370 * 21 20 15 23 23 C 1.36932 * 121.34226 * 224.36881 * 22 21 20 24 24 H 1.08001 * 120.00596 * 152.03653 * 23 22 21 25 25 C 1.38824 * 119.99476 * 332.03764 * 23 22 21 26 26 N 1.31613 * 120.00006 * 343.12959 * 25 23 22 27 27 Si 1.86801 * 119.99902 * 163.13604 * 25 23 22 28 28 H 1.48500 * 109.47046 * 59.99286 * 27 25 23 29 29 H 1.48499 * 109.47236 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47077 * 299.99952 * 27 25 23 31 31 H 1.09002 * 109.46688 * 284.24040 * 1 2 3 32 32 H 1.08995 * 109.47484 * 44.24258 * 1 2 3 33 33 H 1.08998 * 109.46807 * 164.24517 * 1 2 3 34 34 H 1.09002 * 109.47155 * 171.69256 * 3 2 1 35 35 H 1.09005 * 109.47116 * 291.69401 * 3 2 1 36 36 H 1.09007 * 109.47421 * 51.69137 * 3 2 1 37 37 H 1.08997 * 113.61094 * 334.57282 * 4 2 1 38 38 H 1.09003 * 113.68913 * 203.67400 * 4 2 1 39 39 H 1.08997 * 113.61785 * 139.97918 * 5 4 2 40 40 H 1.09003 * 113.61510 * 270.80350 * 5 4 2 41 41 H 0.96997 * 119.99805 * 0.02562 * 10 8 6 42 42 H 1.09008 * 109.47003 * 300.00130 * 11 10 8 43 43 H 1.08997 * 109.46922 * 59.99952 * 11 10 8 44 44 H 1.09001 * 109.19981 * 287.44576 * 14 12 11 45 45 H 1.09002 * 109.19863 * 46.78386 * 14 12 11 46 46 H 1.08005 * 119.70809 * 359.54235 * 16 15 14 47 47 H 1.08005 * 120.08706 * 179.97438 * 17 16 15 48 48 H 1.07998 * 120.14271 * 180.20720 * 18 17 16 49 49 H 1.08001 * 119.74717 * 180.02562 * 19 18 17 50 50 H 1.09002 * 109.43679 * 108.55116 * 21 20 15 51 51 H 1.09004 * 109.43059 * 228.46184 * 21 20 15 52 52 H 0.96996 * 120.00232 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 1.0603 5 6 2.0930 -2.0425 0.0020 6 6 2.1448 -0.9317 -1.0602 7 1 3.1575 -0.6532 -1.3518 8 6 1.2427 -1.1829 -2.2410 9 8 0.4577 -0.3297 -2.5967 10 7 1.3083 -2.3558 -2.9017 11 6 0.4310 -2.6002 -4.0492 12 6 0.7050 -3.9961 -4.6123 13 1 0.4420 -4.7509 -3.8711 14 6 -0.1161 -4.2113 -5.8829 15 6 0.3580 -5.4315 -6.6274 16 6 -0.5161 -6.0092 -7.5405 17 6 -0.1411 -7.1224 -8.2629 18 6 1.1153 -7.6700 -8.0799 19 6 1.9835 -7.1009 -7.1715 20 6 1.6052 -5.9833 -6.4398 21 6 2.5925 -5.4264 -5.4450 22 7 2.1286 -4.1196 -4.9671 23 6 2.9851 -3.0571 -4.8548 24 1 2.6099 -2.0487 -4.9488 25 6 4.3357 -3.2762 -4.6203 26 7 4.7457 -4.4468 -4.1799 27 14 5.5711 -1.9096 -4.9295 28 1 5.2427 -0.7422 -4.0724 29 1 6.9366 -2.3937 -4.6040 30 1 5.5157 -1.5062 -6.3576 31 1 -0.3633 0.2528 0.9961 32 1 -0.3634 0.7362 -0.7169 33 1 -0.3633 -0.9891 -0.2790 34 1 3.2023 1.3500 0.1485 35 1 1.9151 1.8923 -0.9549 36 1 1.6781 1.9922 0.8064 37 1 1.4946 -1.1068 1.9156 38 1 3.1592 -0.6495 1.3506 39 1 2.9718 -2.6873 0.0025 40 1 1.1575 -2.6018 0.0034 41 1 1.9359 -3.0384 -2.6169 42 1 -0.6096 -2.5348 -3.7313 43 1 0.6234 -1.8531 -4.8192 44 1 -1.1647 -4.3400 -5.6145 45 1 -0.0156 -3.3376 -6.5269 46 1 -1.4975 -5.5824 -7.6858 47 1 -0.8269 -7.5652 -8.9702 48 1 1.4154 -8.5398 -8.6454 49 1 2.9651 -7.5279 -7.0284 50 1 2.6821 -6.1104 -4.6011 51 1 3.5649 -5.3123 -5.9243 52 1 5.6894 -4.6000 -4.0164 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054049964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:52 Heat of formation + Delta-G solvation = 8.824650 kcal Electronic energy + Delta-G solvation = -31211.092204 eV Core-core repulsion = 27368.510052 eV Total energy + Delta-G solvation = -3842.582152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.63980 -40.73022 -39.09522 -37.89025 -35.29869 -34.47600 -32.99842 -32.00134 -31.38975 -30.46895 -28.29782 -28.18643 -27.34160 -26.07673 -24.55718 -23.44251 -22.90076 -22.56049 -21.41172 -20.60904 -19.36120 -18.34918 -17.77349 -17.51346 -16.99349 -16.62083 -16.32904 -16.03522 -15.93501 -15.72316 -15.29721 -15.22855 -14.86813 -14.77047 -14.53988 -14.08265 -14.04194 -13.89463 -13.74069 -13.49261 -13.30141 -13.15016 -13.10189 -12.81756 -12.74315 -12.65266 -12.53960 -12.44929 -12.29165 -12.19482 -12.15322 -11.88196 -11.69629 -11.61060 -11.30515 -11.28034 -10.95833 -10.63520 -10.35092 -9.74520 -9.54530 -9.27639 -8.67742 -7.87903 -5.29365 0.58201 0.61861 1.40327 1.45130 1.49133 1.84951 2.44479 2.53537 2.97765 3.29349 3.47931 3.50526 3.61167 3.79674 3.84556 3.87397 4.09541 4.22317 4.23420 4.26411 4.33691 4.39564 4.42146 4.51765 4.56924 4.66619 4.70478 4.72673 4.79910 4.83232 4.85599 4.91714 4.92161 4.93591 5.01445 5.05357 5.13818 5.16657 5.21826 5.24893 5.26347 5.30021 5.42499 5.46962 5.52012 5.60725 5.67189 5.69926 5.74084 5.76292 6.00014 6.27095 6.34781 6.83716 7.13895 7.47251 7.80368 8.37133 9.19097 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003661 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.037345 B = 7645.376642 C = 8965.633957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.063 4.063 3 C -0.133 4.133 4 C -0.116 4.116 5 C -0.126 4.126 6 C -0.137 4.137 7 H 0.105 0.895 8 C 0.518 3.482 9 O -0.588 6.588 10 N -0.695 5.695 11 C 0.143 3.857 12 C 0.160 3.840 13 H 0.041 0.959 14 C -0.084 4.084 15 C -0.083 4.083 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.108 4.108 21 C 0.225 3.775 22 N -0.596 5.596 23 C -0.232 4.232 24 H 0.059 0.941 25 C -0.028 4.028 26 N -0.921 5.921 27 Si 0.936 3.064 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.410 0.590 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.140 0.860 47 H 0.149 0.851 48 H 0.143 0.857 49 H 0.115 0.885 50 H 0.016 0.984 51 H 0.053 0.947 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 -0.679 4.307 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.190 4.190 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.158 4.158 7 H 0.123 0.877 8 C 0.305 3.695 9 O -0.470 6.470 10 N -0.344 5.344 11 C 0.018 3.982 12 C 0.054 3.946 13 H 0.059 0.941 14 C -0.123 4.123 15 C -0.083 4.083 16 C -0.145 4.145 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.156 4.156 20 C -0.110 4.110 21 C 0.099 3.901 22 N -0.320 5.320 23 C -0.363 4.363 24 H 0.076 0.924 25 C -0.225 4.225 26 N -0.567 5.567 27 Si 0.766 3.234 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.246 0.754 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.158 0.842 47 H 0.166 0.834 48 H 0.161 0.839 49 H 0.133 0.867 50 H 0.034 0.966 51 H 0.072 0.928 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.096 -0.124 4.105 9.980 hybrid contribution 1.699 0.268 -0.518 1.796 sum -7.397 0.144 3.588 8.222 Atomic orbital electron populations 1.21490 0.92894 1.01157 1.01496 1.21755 0.95910 0.94627 0.94028 1.21708 1.00664 0.95047 1.01562 1.22976 1.01982 0.94202 0.96164 1.22819 1.02750 0.96019 0.94752 1.23015 0.99319 1.01087 0.92416 0.87740 1.20801 0.83438 0.81261 0.83985 1.90581 1.41386 1.45626 1.69431 1.45978 1.40128 1.17889 1.30422 1.21149 0.93231 0.95849 0.87921 1.20823 0.85205 0.94294 0.94284 0.94129 1.20825 0.99760 0.95283 0.96468 1.19654 0.93465 0.97054 0.98155 1.21436 0.99917 0.96863 0.96327 1.21333 0.96804 0.96471 1.00210 1.21307 0.94264 1.00619 0.98277 1.21226 1.00343 0.96302 0.97687 1.20738 0.95887 0.96105 0.98241 1.19283 0.93513 0.85517 0.91781 1.44129 1.04297 1.08554 1.75029 1.18974 0.88750 0.86991 1.41536 0.92350 1.25371 0.99138 0.97850 1.00093 1.70094 1.14577 1.23717 1.48272 0.85831 0.79433 0.80360 0.77748 1.20636 1.21811 1.21918 0.90849 0.93264 0.94246 0.91943 0.94193 0.90766 0.89393 0.88744 0.90724 0.89947 0.75374 0.90914 0.93822 0.88704 0.91508 0.84220 0.83356 0.83903 0.86666 0.96584 0.92844 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 7.57 71.98 0.54 -2.44 16 2 C -0.06 -1.61 1.19 -51.60 -0.06 -1.67 16 3 C -0.13 -3.14 9.16 71.98 0.66 -2.48 16 4 C -0.12 -2.43 7.23 31.12 0.22 -2.20 16 5 C -0.13 -3.26 6.99 31.12 0.22 -3.04 16 6 C -0.14 -4.29 3.68 -10.96 -0.04 -4.33 16 7 H 0.10 3.45 8.10 -2.39 -0.02 3.43 16 8 C 0.52 19.51 6.28 87.66 0.55 20.06 16 9 O -0.59 -24.88 14.59 -3.03 -0.04 -24.93 16 10 N -0.69 -26.64 4.00 -463.06 -1.85 -28.49 16 11 C 0.14 5.31 4.43 86.38 0.38 5.69 16 12 C 0.16 6.05 3.00 44.78 0.13 6.18 16 13 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 14 C -0.08 -2.76 5.21 29.75 0.16 -2.60 16 15 C -0.08 -2.86 5.76 -19.85 -0.11 -2.97 16 16 C -0.13 -3.54 9.59 22.37 0.21 -3.32 16 17 C -0.13 -3.25 10.04 22.20 0.22 -3.03 16 18 C -0.13 -3.45 10.05 22.21 0.22 -3.22 16 19 C -0.14 -4.66 9.62 22.34 0.21 -4.45 16 20 C -0.11 -4.22 5.82 -19.82 -0.12 -4.34 16 21 C 0.22 10.37 4.83 85.64 0.41 10.78 16 22 N -0.60 -27.24 2.85 -680.30 -1.94 -29.18 16 23 C -0.23 -11.66 7.04 84.04 0.59 -11.07 16 24 H 0.06 3.06 6.21 -2.91 -0.02 3.04 16 25 C -0.03 -1.44 4.94 84.87 0.42 -1.02 16 26 N -0.92 -49.80 11.43 21.65 0.25 -49.55 16 27 Si 0.94 43.77 29.59 68.60 2.03 45.80 16 28 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 29 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 30 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.50 7.25 -2.39 -0.02 1.48 16 33 H 0.04 1.12 6.71 -2.39 -0.02 1.10 16 34 H 0.06 1.35 8.01 -2.39 -0.02 1.33 16 35 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.09 1.54 8.10 -2.39 -0.02 1.52 16 38 H 0.09 1.76 8.01 -2.39 -0.02 1.75 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.08 2.13 7.66 -2.39 -0.02 2.11 16 41 H 0.41 16.69 7.27 -92.71 -0.67 16.02 16 42 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.04 1.81 7.25 -2.39 -0.02 1.79 16 44 H 0.09 2.48 8.10 -2.39 -0.02 2.46 16 45 H 0.07 2.28 8.03 -2.39 -0.02 2.26 16 46 H 0.14 3.05 8.05 -2.91 -0.02 3.03 16 47 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 48 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 49 H 0.12 3.81 8.05 -2.91 -0.02 3.79 16 50 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.05 2.80 6.64 -2.38 -0.02 2.78 16 52 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -60.95 401.11 3.51 -57.45 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.23 Total: 38.38 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 4.84 Total: -9.48 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -3.54 Total: -107.22 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.04 Total: -24.93 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -60.95 3.51 -57.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.272 kcal (2) G-P(sol) polarization free energy of solvation -60.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds