Wall clock time and date at job start Wed Apr 1 2020 01:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38231 * 120.00082 * 2 1 4 4 C 1.38235 * 119.99873 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.00061 * 359.96028 * 4 3 2 6 6 C 1.50698 * 120.00299 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47281 * 89.99657 * 6 5 4 8 8 O 1.21289 * 119.99788 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00194 * 180.02562 * 7 6 5 10 10 C 1.46935 * 120.71391 * 359.97438 * 9 7 6 11 11 C 1.53180 * 108.93893 * 234.27623 * 10 9 7 12 12 C 1.53189 * 109.28013 * 304.68842 * 11 10 9 13 13 C 1.52073 * 109.67596 * 59.95692 * 12 11 10 14 14 C 1.54577 * 110.52308 * 177.48528 * 13 12 11 15 15 C 1.54468 * 102.75359 * 276.32255 * 14 13 12 16 16 N 1.47082 * 107.42506 * 338.70095 * 15 14 13 17 17 C 1.36939 * 125.62865 * 178.88632 * 16 15 14 18 18 H 1.08002 * 120.00350 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99534 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00105 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99865 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46800 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46943 * 120.00410 * 21 19 17 24 24 H 1.48490 * 109.47317 * 240.00505 * 21 19 17 25 25 C 1.47582 * 108.75033 * 358.92322 * 16 15 14 26 26 C 1.47110 * 120.71093 * 180.02562 * 9 7 6 27 27 C 1.38238 * 119.99975 * 0.27225 * 5 4 3 28 28 C 1.38237 * 119.99892 * 359.51674 * 27 5 4 29 29 H 1.09008 * 109.47319 * 89.99697 * 1 2 3 30 30 H 1.08991 * 109.47618 * 209.99805 * 1 2 3 31 31 H 1.09000 * 109.47307 * 330.00272 * 1 2 3 32 32 H 1.08002 * 120.00112 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.99868 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.46523 * 330.00338 * 6 5 4 35 35 H 1.08993 * 109.47446 * 210.00549 * 6 5 4 36 36 H 1.09000 * 109.55796 * 114.44127 * 10 9 7 37 37 H 1.09001 * 109.64945 * 354.17284 * 10 9 7 38 38 H 1.09000 * 109.50559 * 184.74523 * 11 10 9 39 39 H 1.09001 * 109.53345 * 64.65033 * 11 10 9 40 40 H 1.09006 * 109.43414 * 299.89526 * 12 11 10 41 41 H 1.09002 * 109.40739 * 180.02562 * 12 11 10 42 42 H 1.09003 * 110.70812 * 158.04916 * 14 13 12 43 43 H 1.08996 * 110.86557 * 34.66750 * 14 13 12 44 44 H 1.09002 * 109.87908 * 219.20059 * 15 14 13 45 45 H 1.08996 * 109.87788 * 98.19920 * 15 14 13 46 46 H 0.97001 * 119.99940 * 179.97438 * 20 19 17 47 47 H 1.08999 * 110.37886 * 142.11879 * 25 16 15 48 48 H 1.09002 * 110.37372 * 264.36409 * 25 16 15 49 49 H 1.08996 * 109.57761 * 7.91647 * 26 9 7 50 50 H 1.09003 * 109.57112 * 247.52737 * 26 9 7 51 51 H 1.07998 * 120.00111 * 179.72604 * 27 5 4 52 52 H 1.08003 * 120.00438 * 180.25063 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0019 6 6 5.7787 -0.0002 0.0031 7 6 6.2799 0.0008 1.4242 8 8 5.4910 0.0011 2.3455 9 7 7.6048 0.0014 1.6715 10 6 8.5743 0.0005 0.5674 11 6 9.5383 -1.1753 0.7533 12 6 10.1854 -1.0847 2.1388 13 6 9.1085 -1.1368 3.2113 14 6 9.7446 -1.1102 4.6198 15 6 10.1054 -2.5929 4.8592 16 7 9.2671 -3.4008 3.9604 17 6 9.2991 -4.7655 3.8518 18 1 8.6405 -5.2677 3.1586 19 6 10.1781 -5.5034 4.6327 20 7 10.9804 -4.8914 5.4778 21 14 10.2214 -7.3651 4.4851 22 1 9.2283 -7.8045 3.4723 23 1 11.5792 -7.7970 4.0665 24 1 9.8915 -7.9736 5.7989 25 6 8.3863 -2.4980 3.1941 26 6 8.1112 0.0018 3.0527 27 6 3.5805 -1.1973 -0.0030 28 6 2.1981 -1.1973 0.0009 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1325 -0.0004 33 1 4.1206 2.1324 0.0001 34 1 6.1424 0.8895 -0.5111 35 1 6.1424 -0.8905 -0.5099 36 1 9.1341 0.9357 0.5727 37 1 8.0488 -0.1049 -0.3817 38 1 10.3124 -1.1360 -0.0131 39 1 8.9897 -2.1133 0.6685 40 1 10.7350 -0.1470 2.2219 41 1 10.8723 -1.9204 2.2731 42 1 9.0248 -0.7635 5.3614 43 1 10.6400 -0.4887 4.6297 44 1 9.9023 -2.8611 5.8961 45 1 11.1585 -2.7593 4.6330 46 1 11.5943 -5.4071 6.0238 47 1 8.2744 -2.8555 2.1705 48 1 7.4120 -2.4188 3.6764 49 1 7.2820 -0.1398 3.7458 50 1 8.6051 0.9511 3.2602 51 1 4.1204 -2.1326 -0.0064 52 1 1.6580 -2.1325 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054161082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:20 Heat of formation + Delta-G solvation = 6.883624 kcal Electronic energy + Delta-G solvation = -30534.852819 eV Core-core repulsion = 26692.186498 eV Total energy + Delta-G solvation = -3842.666321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.51667 -39.44975 -38.19258 -35.79504 -33.94064 -32.97439 -31.83172 -30.98993 -30.53218 -29.63423 -28.39639 -26.09500 -25.59860 -24.78861 -23.46480 -22.80869 -22.06815 -21.07394 -20.13975 -19.17309 -17.99665 -17.17513 -16.76508 -16.31222 -15.86960 -15.50004 -15.10038 -15.00291 -14.73370 -14.58125 -14.06870 -13.90873 -13.71434 -13.49956 -13.39161 -13.15268 -13.12537 -12.92387 -12.66473 -12.46422 -12.04113 -11.94027 -11.88118 -11.82662 -11.61540 -11.27915 -11.03637 -11.02035 -10.89078 -10.84270 -10.72013 -10.61762 -10.07714 -10.04250 -9.87487 -9.71442 -9.61714 -9.53869 -8.96255 -8.56193 -8.55547 -8.41133 -6.76270 -5.67169 -2.99385 1.22805 1.36648 2.73938 3.07571 3.41316 3.47062 3.49334 3.70265 4.52483 4.52742 4.64798 4.66770 4.79547 4.85914 4.93204 4.97601 5.08857 5.14021 5.21673 5.27962 5.31627 5.35759 5.39003 5.41353 5.44879 5.55574 5.60788 5.62759 5.63856 5.79048 5.91528 5.93491 5.98791 5.99202 6.00070 6.05073 6.15579 6.32468 6.33589 6.40043 6.50712 6.51686 6.52802 6.60052 6.67487 6.76264 6.86606 6.94267 7.00629 7.52256 7.60935 7.67845 7.87058 8.30251 8.30697 9.27108 9.87551 10.54720 11.44669 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.002775 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.315483 B =10089.175046 C =11312.059043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.121 4.121 4 C -0.102 4.102 5 C -0.068 4.068 6 C -0.101 4.101 7 C 0.516 3.484 8 O -0.532 6.532 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.137 4.137 12 C -0.096 4.096 13 C -0.086 4.086 14 C -0.134 4.134 15 C 0.180 3.820 16 N -0.604 5.604 17 C -0.222 4.222 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.909 3.091 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.152 3.848 26 C 0.130 3.870 27 C -0.099 4.099 28 C -0.119 4.119 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.040 0.960 45 H 0.045 0.955 46 H 0.250 0.750 47 H 0.037 0.963 48 H 0.015 0.985 49 H 0.091 0.909 50 H 0.062 0.938 51 H 0.121 0.879 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.127 15.017 -14.802 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.068 4.068 6 C -0.141 4.141 7 C 0.303 3.697 8 O -0.409 6.409 9 N -0.342 5.342 10 C -0.015 4.015 11 C -0.175 4.175 12 C -0.134 4.134 13 C -0.087 4.087 14 C -0.173 4.173 15 C 0.056 3.944 16 N -0.331 5.331 17 C -0.351 4.351 18 H 0.093 0.907 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.740 3.260 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.026 3.974 26 C 0.008 3.992 27 C -0.117 4.117 28 C -0.137 4.137 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.033 0.967 49 H 0.109 0.891 50 H 0.080 0.920 51 H 0.139 0.861 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.447 14.834 -14.211 23.516 hybrid contribution 0.291 -1.077 0.055 1.117 sum -11.156 13.757 -14.156 22.674 Atomic orbital electron populations 1.20778 0.91402 1.02743 1.02066 1.19899 0.95946 0.93292 0.99966 1.20934 0.94035 0.97399 1.01554 1.20921 0.94202 0.97250 0.99664 1.19277 0.93638 0.93583 1.00336 1.20706 0.93175 1.04920 0.95323 1.20431 0.81811 0.76333 0.91077 1.90724 1.54606 1.49252 1.46271 1.48157 1.05180 1.73196 1.07669 1.21757 0.91245 0.99182 0.89329 1.21986 0.98593 0.98607 0.98286 1.21223 0.97403 1.02062 0.92665 1.21426 0.95423 0.95753 0.96146 1.22868 0.99298 1.00696 0.94468 1.21127 0.95003 0.83927 0.94380 1.44522 1.42092 1.01856 1.44583 1.19081 1.17002 0.80459 1.18538 0.90654 1.24774 0.98904 0.97927 0.98981 1.69975 1.26115 1.33279 1.27693 0.86077 0.77208 0.85457 0.77253 1.20588 1.21844 1.21819 1.21453 0.92672 0.88139 0.95132 1.21489 0.97666 0.97708 0.82342 1.21005 0.94266 0.97520 0.98943 1.20984 0.94085 0.97508 1.01111 0.91364 0.91585 0.91673 0.86289 0.86386 0.88233 0.87977 0.91486 0.90187 0.91047 0.90827 0.92698 0.90285 0.92383 0.92013 0.94191 0.93643 0.93919 0.94533 0.96697 0.89077 0.91995 0.86095 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.09 -0.96 5.88 -104.62 -0.62 -1.57 16 3 C -0.12 -1.27 9.70 -39.59 -0.38 -1.65 16 4 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 5 C -0.07 -0.81 4.37 -104.62 -0.46 -1.26 16 6 C -0.10 -1.05 4.18 -29.04 -0.12 -1.18 16 7 C 0.52 7.37 7.70 -10.99 -0.08 7.28 16 8 O -0.53 -9.87 15.46 5.55 0.09 -9.79 16 9 N -0.61 -8.10 2.87 -173.23 -0.50 -8.59 16 10 C 0.11 1.09 6.32 -3.71 -0.02 1.07 16 11 C -0.14 -1.67 5.91 -26.54 -0.16 -1.83 16 12 C -0.10 -1.45 4.64 -27.11 -0.13 -1.58 16 13 C -0.09 -1.46 0.55 -153.99 -0.08 -1.55 16 14 C -0.13 -2.50 5.91 -25.13 -0.15 -2.65 16 15 C 0.18 4.40 5.02 -2.95 -0.01 4.38 16 16 N -0.60 -15.56 3.39 -170.31 -0.58 -16.14 16 17 C -0.22 -6.28 10.28 -15.06 -0.15 -6.44 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -27.34 10.30 55.49 0.57 -26.77 16 21 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.15 3.25 5.96 -2.88 -0.02 3.23 16 26 C 0.13 1.97 5.12 -4.12 -0.02 1.95 16 27 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 28 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 29 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.10 0.77 7.88 -51.93 -0.41 0.36 16 35 H 0.10 0.91 7.65 -51.93 -0.40 0.51 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.61 5.95 -51.93 -0.31 0.30 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.05 6.33 -51.93 -0.33 0.72 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.45 7.85 -51.93 -0.41 1.04 16 42 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 43 H 0.06 1.02 8.01 -51.93 -0.42 0.60 16 44 H 0.04 1.09 7.50 -51.93 -0.39 0.71 16 45 H 0.05 1.21 7.37 -51.93 -0.38 0.83 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.04 0.77 6.10 -51.93 -0.32 0.46 16 48 H 0.02 0.36 7.87 -51.93 -0.41 -0.05 16 49 H 0.09 1.59 6.84 -51.93 -0.36 1.24 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 52 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -33.83 401.67 -11.41 -45.24 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.73 Total: 0.09 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -3.30 Total: -7.50 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.50 Total: -51.50 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.83 -11.41 -45.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054161082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.126 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds