Wall clock time and date at job start Wed Apr 1 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38232 * 120.00380 * 2 1 4 4 C 1.38236 * 119.99905 * 179.97438 * 3 2 1 5 5 C 1.38228 * 120.00163 * 359.95629 * 4 3 2 6 6 C 1.50705 * 120.00050 * 180.02562 * 5 4 3 7 7 C 1.50709 * 109.46784 * 89.99926 * 6 5 4 8 8 O 1.21279 * 120.00082 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99826 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.69973 * 0.02562 * 9 7 6 11 11 C 1.53192 * 108.92517 * 234.13862 * 10 9 7 12 12 C 1.53171 * 109.27241 * 304.77527 * 11 10 9 13 13 C 1.52240 * 109.65342 * 60.17825 * 12 11 10 14 14 C 1.54497 * 110.25144 * 62.91396 * 13 12 11 15 15 C 1.55028 * 101.51945 * 83.78451 * 14 13 12 16 16 N 1.47484 * 104.90567 * 36.35499 * 15 14 13 17 17 C 1.36936 * 125.66484 * 156.25283 * 16 15 14 18 18 H 1.08001 * 120.00285 * 179.69765 * 17 16 15 19 19 C 1.38816 * 119.99847 * 359.69050 * 17 16 15 20 20 N 1.31613 * 119.99787 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46855 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47208 * 120.00248 * 21 19 17 24 24 H 1.48500 * 109.47098 * 240.00465 * 21 19 17 25 25 C 1.47196 * 108.67297 * 335.99003 * 16 15 14 26 26 C 1.47079 * 120.70141 * 179.97438 * 9 7 6 27 27 C 1.38241 * 120.00160 * 0.27288 * 5 4 3 28 28 C 1.38235 * 119.99635 * 359.51842 * 27 5 4 29 29 H 1.09004 * 109.46540 * 90.00151 * 1 2 3 30 30 H 1.08991 * 109.47279 * 209.99888 * 1 2 3 31 31 H 1.09001 * 109.46665 * 330.00684 * 1 2 3 32 32 H 1.08003 * 119.99906 * 359.97438 * 3 2 1 33 33 H 1.08008 * 119.99754 * 179.97438 * 4 3 2 34 34 H 1.08989 * 109.47013 * 330.00082 * 6 5 4 35 35 H 1.08997 * 109.47235 * 209.99664 * 6 5 4 36 36 H 1.09008 * 109.55866 * 114.30807 * 10 9 7 37 37 H 1.08996 * 109.56701 * 353.97303 * 10 9 7 38 38 H 1.08995 * 109.50783 * 184.83940 * 11 10 9 39 39 H 1.09000 * 109.50442 * 64.71319 * 11 10 9 40 40 H 1.08998 * 109.44315 * 300.12104 * 12 11 10 41 41 H 1.09004 * 109.41126 * 180.21391 * 12 11 10 42 42 H 1.08992 * 111.02163 * 201.84112 * 14 13 12 43 43 H 1.08996 * 111.01565 * 325.72886 * 14 13 12 44 44 H 1.09006 * 110.35503 * 277.49738 * 15 14 13 45 45 H 1.09000 * 110.35709 * 155.21379 * 15 14 13 46 46 H 0.97003 * 119.99806 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.90656 * 120.87813 * 25 16 15 48 48 H 1.09004 * 109.90845 * 242.14404 * 25 16 15 49 49 H 1.09003 * 109.57832 * 7.77475 * 26 9 7 50 50 H 1.08996 * 109.58090 * 247.37729 * 26 9 7 51 51 H 1.07994 * 119.99835 * 179.73158 * 27 5 4 52 52 H 1.08000 * 120.00129 * 180.25106 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0020 6 6 5.7788 -0.0003 0.0032 7 6 6.2799 0.0008 1.4245 8 8 5.4911 0.0020 2.3456 9 7 7.6048 0.0004 1.6718 10 6 8.5740 -0.0005 0.5675 11 6 9.5393 -1.1752 0.7547 12 6 10.1846 -1.0834 2.1408 13 6 9.1054 -1.1421 3.2129 14 6 8.3696 -2.4995 3.1573 15 6 9.3157 -3.3990 3.9935 16 7 9.8213 -2.5231 5.0670 17 6 10.3008 -2.9416 6.2795 18 1 10.6541 -2.2182 6.9994 19 6 10.3329 -4.2957 6.5833 20 7 9.9027 -5.1773 5.7058 21 14 10.9864 -4.8666 8.2375 22 1 11.4045 -3.6877 9.0381 23 1 9.9211 -5.6042 8.9628 24 1 12.1527 -5.7614 8.0269 25 6 9.7306 -1.1248 4.6163 26 6 8.1109 0.0020 3.0528 27 6 3.5805 -1.1973 -0.0028 28 6 2.1981 -1.1973 0.0010 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.6583 2.1324 -0.0004 33 1 4.1207 2.1323 0.0001 34 1 6.1425 0.8892 -0.5110 35 1 6.1424 -0.8907 -0.5096 36 1 9.1329 0.9354 0.5717 37 1 8.0472 -0.1086 -0.3805 38 1 10.3142 -1.1351 -0.0108 39 1 8.9914 -2.1136 0.6698 40 1 10.7296 -0.1433 2.2257 41 1 10.8749 -1.9163 2.2749 42 1 7.3856 -2.4302 3.6208 43 1 8.2924 -2.8605 2.1318 44 1 10.1402 -3.7581 3.3774 45 1 8.7645 -4.2385 4.4172 46 1 9.9255 -6.1236 5.9180 47 1 9.0982 -0.5555 5.2975 48 1 10.7263 -0.6833 4.5737 49 1 7.2810 -0.1355 3.7461 50 1 8.6080 0.9499 3.2585 51 1 4.1205 -2.1326 -0.0061 52 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054161083.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:27 Heat of formation + Delta-G solvation = 8.747732 kcal Electronic energy + Delta-G solvation = -30375.518955 eV Core-core repulsion = 26532.933467 eV Total energy + Delta-G solvation = -3842.585487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.55192 -39.47547 -38.20877 -35.83707 -33.96184 -33.02174 -31.83599 -31.01095 -30.52400 -29.52775 -28.56791 -26.18052 -25.63541 -24.69809 -23.40513 -22.83034 -22.16365 -21.08099 -20.14995 -19.17555 -18.09023 -17.12732 -16.80921 -16.30634 -15.90260 -15.53010 -15.17037 -15.01654 -14.82632 -14.61398 -14.05613 -13.91060 -13.63550 -13.52267 -13.30338 -13.29078 -13.19790 -12.93207 -12.59998 -12.43992 -12.23939 -11.97301 -11.94597 -11.91060 -11.51484 -11.29877 -11.06910 -11.04766 -10.97464 -10.88381 -10.73156 -10.52182 -10.07522 -10.02725 -9.96053 -9.68459 -9.64103 -9.41118 -8.98276 -8.60881 -8.58195 -8.43470 -6.78322 -5.61188 -3.02469 1.20743 1.34622 2.71679 3.04873 3.41916 3.47336 3.49868 3.68137 4.49542 4.52326 4.61155 4.64557 4.76894 4.82403 4.91044 4.94557 5.01261 5.08925 5.20385 5.24786 5.29527 5.33863 5.37650 5.38575 5.41157 5.53721 5.59589 5.60796 5.62692 5.72128 5.88503 5.93690 5.97360 5.98004 5.98114 6.03362 6.17281 6.29871 6.31897 6.42005 6.48539 6.48817 6.50415 6.55276 6.66422 6.77119 6.86151 6.92159 6.98485 7.50014 7.57278 7.67650 7.91078 8.28355 8.40952 9.26339 9.87349 10.53028 11.42586 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.002511 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.630743 B =11146.716110 C =12189.677573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.121 4.121 4 C -0.102 4.102 5 C -0.069 4.069 6 C -0.101 4.101 7 C 0.515 3.485 8 O -0.531 6.531 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.083 4.083 14 C -0.130 4.130 15 C 0.155 3.845 16 N -0.603 5.603 17 C -0.219 4.219 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.149 3.851 26 C 0.130 3.870 27 C -0.100 4.100 28 C -0.119 4.119 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.009 0.991 45 H 0.103 0.897 46 H 0.250 0.750 47 H 0.024 0.976 48 H 0.023 0.977 49 H 0.092 0.908 50 H 0.061 0.939 51 H 0.121 0.879 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 12.623 -18.583 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.069 4.069 6 C -0.141 4.141 7 C 0.303 3.697 8 O -0.407 6.407 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.175 4.175 12 C -0.137 4.137 13 C -0.084 4.084 14 C -0.168 4.168 15 C 0.031 3.969 16 N -0.329 5.329 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.022 3.978 26 C 0.008 3.992 27 C -0.118 4.118 28 C -0.137 4.137 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.120 0.880 46 H 0.061 0.939 47 H 0.042 0.958 48 H 0.041 0.959 49 H 0.111 0.889 50 H 0.079 0.921 51 H 0.139 0.861 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.154 12.445 -17.952 24.526 hybrid contribution 0.638 -0.352 0.830 1.104 sum -10.516 12.093 -17.122 23.451 Atomic orbital electron populations 1.20780 0.91382 1.02770 1.02071 1.19905 0.95965 0.93290 0.99910 1.20940 0.94036 0.97423 1.01484 1.20923 0.94214 0.97264 0.99612 1.19274 0.93623 0.93600 1.00397 1.20705 0.93197 1.04866 0.95307 1.20434 0.81812 0.76412 0.91069 1.90732 1.54582 1.49123 1.46259 1.48131 1.05156 1.73211 1.07626 1.21751 0.91253 0.99164 0.89375 1.22008 0.98604 0.98670 0.98224 1.21342 0.97394 1.02203 0.92785 1.21337 0.95136 0.95793 0.96165 1.23001 0.99215 0.94970 0.99635 1.21913 0.93744 0.93686 0.87587 1.44543 1.74167 0.99538 1.14638 1.19125 1.33589 0.91313 0.90749 0.90501 1.24783 1.01896 0.95735 0.98409 1.69827 1.52777 1.00687 1.33799 0.86010 0.78044 0.78401 0.83131 1.20555 1.21784 1.21834 1.21158 0.96637 0.88840 0.91132 1.21539 0.97767 0.97679 0.82216 1.20989 0.94263 0.97464 0.99053 1.20980 0.94077 0.97509 1.01117 0.91355 0.91572 0.91655 0.86269 0.86379 0.88246 0.88041 0.91419 0.90159 0.90995 0.90938 0.92340 0.90819 0.92397 0.92551 0.97259 0.87968 0.93885 0.95839 0.95934 0.88942 0.92067 0.86136 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.09 -0.93 5.88 -104.62 -0.62 -1.55 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.10 -1.12 9.70 -39.59 -0.38 -1.50 16 5 C -0.07 -0.79 4.37 -104.62 -0.46 -1.25 16 6 C -0.10 -1.01 4.18 -29.03 -0.12 -1.13 16 7 C 0.52 7.21 7.69 -10.98 -0.08 7.13 16 8 O -0.53 -9.81 15.46 5.56 0.09 -9.73 16 9 N -0.61 -7.91 2.82 -173.09 -0.49 -8.40 16 10 C 0.11 1.03 6.32 -3.71 -0.02 1.00 16 11 C -0.14 -1.51 5.90 -26.54 -0.16 -1.67 16 12 C -0.10 -1.44 4.55 -27.03 -0.12 -1.56 16 13 C -0.08 -1.42 0.55 -154.06 -0.09 -1.51 16 14 C -0.13 -2.56 5.73 -24.87 -0.14 -2.70 16 15 C 0.16 3.83 5.57 -2.43 -0.01 3.82 16 16 N -0.60 -15.67 3.40 -170.23 -0.58 -16.25 16 17 C -0.22 -6.22 10.28 -15.06 -0.15 -6.37 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 20 N -0.92 -27.35 10.09 55.49 0.56 -26.79 16 21 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.15 3.13 6.43 -3.33 -0.02 3.11 16 26 C 0.13 2.01 4.98 -4.01 -0.02 1.99 16 27 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 28 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.10 0.73 7.88 -51.94 -0.41 0.32 16 35 H 0.10 0.83 7.65 -51.93 -0.40 0.44 16 36 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.08 0.56 5.94 -51.93 -0.31 0.25 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.89 6.22 -51.93 -0.32 0.56 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.24 7.49 -51.93 -0.39 0.85 16 42 H 0.06 1.24 7.91 -51.93 -0.41 0.83 16 43 H 0.06 1.00 6.00 -51.93 -0.31 0.69 16 44 H 0.01 0.24 7.76 -51.93 -0.40 -0.16 16 45 H 0.10 2.89 5.88 -51.93 -0.31 2.58 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.02 0.50 7.80 -51.93 -0.40 0.10 16 48 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 49 H 0.09 1.68 6.87 -51.93 -0.36 1.32 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 52 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -33.86 399.86 -11.33 -45.19 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.62 Total: 0.50 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.29 Total: -8.00 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.51 Total: -51.44 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.86 -11.33 -45.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054161083.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.939 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds