Wall clock time and date at job start Wed Apr 1 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38249 * 120.00317 * 2 1 4 4 C 1.38208 * 120.00391 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99754 * 359.71417 * 4 3 2 6 6 C 1.38210 * 119.99664 * 0.54045 * 5 4 3 7 7 C 1.50709 * 119.99821 * 179.75356 * 6 5 4 8 8 C 1.50706 * 109.46512 * 269.72499 * 7 6 5 9 9 O 1.21281 * 120.00120 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99436 * 179.97438 * 8 7 6 11 11 C 1.46932 * 120.71163 * 359.97438 * 10 8 7 12 12 C 1.53199 * 108.89667 * 125.70776 * 11 10 8 13 13 C 1.53180 * 109.26471 * 55.39444 * 12 11 10 14 14 C 1.52060 * 109.73366 * 300.04844 * 13 12 11 15 15 C 1.54573 * 110.52853 * 295.60025 * 14 13 12 16 16 C 1.54476 * 102.75934 * 276.34354 * 15 14 13 17 17 N 1.47085 * 107.42402 * 338.69083 * 16 15 14 18 18 C 1.36942 * 125.62495 * 178.92776 * 17 16 15 19 19 H 1.07993 * 119.99465 * 174.88080 * 18 17 16 20 20 C 1.38813 * 120.00171 * 354.87530 * 18 17 16 21 21 N 1.31619 * 120.00120 * 7.07327 * 20 18 17 22 22 Si 1.86797 * 119.99957 * 187.06804 * 20 18 17 23 23 H 1.48497 * 109.47094 * 94.98691 * 22 20 18 24 24 H 1.48495 * 109.47444 * 214.99098 * 22 20 18 25 25 H 1.48501 * 109.47266 * 334.98991 * 22 20 18 26 26 C 1.47568 * 108.74228 * 358.92652 * 17 16 15 27 27 C 1.47095 * 120.70608 * 180.02562 * 10 8 7 28 28 C 1.38217 * 119.99490 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46630 * 270.01677 * 1 2 3 30 30 H 1.08997 * 109.47300 * 30.01420 * 1 2 3 31 31 H 1.09001 * 109.47475 * 150.01829 * 1 2 3 32 32 H 1.08004 * 119.99882 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.00090 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.00215 * 180.29688 * 5 4 3 35 35 H 1.08998 * 109.47254 * 149.72798 * 7 6 5 36 36 H 1.08992 * 109.47077 * 29.72264 * 7 6 5 37 37 H 1.09000 * 109.57125 * 245.52761 * 11 10 8 38 38 H 1.08996 * 109.57208 * 5.76718 * 11 10 8 39 39 H 1.09002 * 109.50945 * 175.33586 * 12 11 10 40 40 H 1.09006 * 109.50499 * 295.41642 * 12 11 10 41 41 H 1.09004 * 109.42579 * 179.97438 * 13 12 11 42 42 H 1.08995 * 109.42876 * 60.13022 * 13 12 11 43 43 H 1.08995 * 110.71597 * 158.06930 * 15 14 13 44 44 H 1.08999 * 110.86411 * 34.68546 * 15 14 13 45 45 H 1.09002 * 109.87659 * 219.18988 * 16 15 14 46 46 H 1.09002 * 109.87736 * 98.19186 * 16 15 14 47 47 H 0.96994 * 120.00370 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.37650 * 142.12044 * 26 17 16 49 49 H 1.09002 * 110.37595 * 264.35736 * 26 17 16 50 50 H 1.08998 * 109.56581 * 112.35348 * 27 10 8 51 51 H 1.09001 * 109.66541 * 352.04957 * 27 10 8 52 52 H 1.07993 * 120.00522 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0070 6 6 3.5806 -1.1970 0.0017 7 6 4.3341 -2.5022 0.0032 8 6 4.5861 -2.9382 -1.4172 9 8 4.1931 -2.2560 -2.3398 10 7 5.2492 -4.0857 -1.6622 11 6 5.7338 -4.9232 -0.5564 12 6 5.1968 -6.3462 -0.7396 13 6 5.6001 -6.8643 -2.1236 14 6 5.0189 -5.9605 -3.1995 15 6 3.4744 -6.0175 -3.1792 16 6 3.1684 -7.2766 -4.0203 17 7 4.3458 -7.5416 -4.8609 18 6 4.4817 -8.5851 -5.7373 19 1 5.3536 -8.6475 -6.3714 20 6 3.4988 -9.5626 -5.8104 21 7 2.3742 -9.4163 -5.1424 22 14 3.7721 -11.0855 -6.8570 23 1 4.3010 -12.1820 -6.0067 24 1 2.4840 -11.5069 -7.4638 25 1 4.7488 -10.7782 -7.9326 26 6 5.3565 -6.4974 -4.6041 27 6 5.5043 -4.5258 -3.0424 28 6 2.1980 -1.1971 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5140 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1326 0.0001 34 1 5.3517 -0.0002 0.0123 35 1 3.7446 -3.2615 0.5171 36 1 5.2861 -2.3715 0.5175 37 1 6.8236 -4.9408 -0.5621 38 1 5.3802 -4.5170 0.3912 39 1 5.6168 -6.9955 0.0287 40 1 4.1100 -6.3388 -0.6556 41 1 5.2197 -7.8771 -2.2566 42 1 6.6870 -6.8725 -2.2051 43 1 3.0496 -5.1290 -3.6461 44 1 3.1036 -6.1342 -2.1609 45 1 2.2961 -7.0990 -4.6494 46 1 2.9839 -8.1259 -3.3624 47 1 1.6872 -10.0991 -5.1937 48 1 6.3580 -6.9276 -4.6155 49 1 5.2774 -5.7022 -5.3454 50 1 6.5734 -4.4773 -3.2493 51 1 4.9680 -3.8806 -3.7382 52 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054187120.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:32 Heat of formation + Delta-G solvation = 6.886538 kcal Electronic energy + Delta-G solvation = -30484.886056 eV Core-core repulsion = 26642.219861 eV Total energy + Delta-G solvation = -3842.666195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.54834 -39.47845 -38.20609 -35.83657 -33.70376 -32.96019 -32.12003 -31.82435 -30.20874 -28.74486 -28.05437 -26.97461 -25.66415 -25.08681 -23.53514 -22.31458 -22.07725 -21.08396 -20.13009 -19.09552 -18.09729 -17.12856 -16.79358 -16.59256 -15.88760 -15.70062 -15.09202 -14.93636 -14.69541 -14.59237 -14.07668 -13.89713 -13.67702 -13.40963 -13.30726 -13.19409 -13.12544 -13.07282 -12.62121 -12.42577 -12.10171 -11.98350 -11.94857 -11.93523 -11.71927 -11.24952 -11.11771 -11.01279 -10.93453 -10.86492 -10.64008 -10.54332 -10.07800 -10.03733 -9.90394 -9.76716 -9.61748 -9.55961 -8.87019 -8.68466 -8.54219 -8.43428 -6.78023 -5.68986 -3.00851 1.22201 1.30734 2.70068 3.04314 3.41240 3.46604 3.48645 3.67225 4.46408 4.52316 4.60062 4.62965 4.75454 4.82598 4.98281 5.02541 5.09015 5.10673 5.16183 5.22202 5.30278 5.32681 5.36209 5.42187 5.43717 5.53448 5.55836 5.62867 5.67661 5.75500 5.89592 5.93813 5.95342 5.99156 6.01455 6.03734 6.16742 6.34013 6.34903 6.39888 6.44483 6.50163 6.51581 6.59787 6.67068 6.73663 6.83908 6.90970 6.97737 7.49399 7.60819 7.69225 7.87031 8.26443 8.29538 9.25397 9.86027 10.53456 11.42893 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.002475 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.688013 B =11311.562983 C =12049.966357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.059 4.059 7 C -0.102 4.102 8 C 0.516 3.484 9 O -0.533 6.533 10 N -0.607 5.607 11 C 0.108 3.892 12 C -0.137 4.137 13 C -0.096 4.096 14 C -0.085 4.085 15 C -0.129 4.129 16 C 0.179 3.821 17 N -0.603 5.603 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.148 3.852 27 C 0.130 3.870 28 C -0.104 4.104 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.037 0.963 46 H 0.045 0.955 47 H 0.251 0.749 48 H 0.039 0.961 49 H 0.019 0.981 50 H 0.062 0.938 51 H 0.091 0.909 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 17.199 16.895 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.130 4.130 6 C -0.059 4.059 7 C -0.142 4.142 8 C 0.303 3.697 9 O -0.409 6.409 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.175 4.175 13 C -0.134 4.134 14 C -0.086 4.086 15 C -0.167 4.167 16 C 0.055 3.945 17 N -0.329 5.329 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.021 3.979 27 C 0.007 3.993 28 C -0.122 4.122 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.036 0.964 50 H 0.080 0.920 51 H 0.109 0.891 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.600 17.377 16.316 24.107 hybrid contribution 0.139 -0.985 -0.586 1.155 sum 3.739 16.392 15.730 23.024 Atomic orbital electron populations 1.20794 0.91231 1.02959 1.02144 1.19873 0.96051 0.93090 0.99580 1.20991 0.94281 0.97379 1.01503 1.21047 0.94297 0.97780 1.00325 1.20927 0.99547 0.92016 1.00515 1.19277 0.93532 0.93628 0.99510 1.20718 1.01936 0.96129 0.95397 1.20414 0.77611 0.80612 0.91029 1.90724 1.50473 1.53560 1.46138 1.48138 1.56338 1.21899 1.07683 1.21764 0.99050 0.91500 0.89238 1.22000 1.01977 0.95000 0.98487 1.21215 0.99651 1.00236 0.92276 1.21433 0.97031 0.93161 0.97000 1.22870 0.93605 1.00284 0.99989 1.21150 0.89691 0.91820 0.91870 1.44484 1.13381 1.27636 1.47398 1.19053 1.04640 0.98373 1.13408 0.90514 1.24804 0.96465 0.98798 1.00351 1.69992 1.06354 1.34391 1.45977 0.86141 0.76936 0.83471 0.79504 1.21707 1.21845 1.20679 1.21396 0.93406 0.91554 0.91535 1.21465 1.00185 0.95352 0.82249 1.20875 0.93391 0.97708 1.00218 0.91281 0.91606 0.91379 0.86338 0.86204 0.86425 0.88011 0.88174 0.91403 0.90214 0.91008 0.91103 0.90270 0.92500 0.92766 0.92387 0.94523 0.93643 0.93859 0.94236 0.96384 0.91981 0.89077 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 4 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 5 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 6 C -0.06 -0.68 4.37 -104.62 -0.46 -1.13 16 7 C -0.10 -1.01 4.18 -29.03 -0.12 -1.13 16 8 C 0.52 7.10 7.70 -10.98 -0.08 7.01 16 9 O -0.53 -9.62 15.47 5.56 0.09 -9.53 16 10 N -0.61 -7.82 2.87 -173.18 -0.50 -8.31 16 11 C 0.11 1.04 6.32 -3.70 -0.02 1.02 16 12 C -0.14 -1.57 5.91 -26.54 -0.16 -1.73 16 13 C -0.10 -1.45 4.66 -27.12 -0.13 -1.58 16 14 C -0.08 -1.44 0.55 -153.95 -0.09 -1.52 16 15 C -0.13 -2.50 5.70 -25.13 -0.14 -2.65 16 16 C 0.18 4.41 5.01 -2.95 -0.01 4.39 16 17 N -0.60 -15.38 3.39 -170.30 -0.58 -15.96 16 18 C -0.23 -6.33 10.27 -15.06 -0.15 -6.49 16 19 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 20 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 21 N -0.92 -27.23 10.35 55.49 0.57 -26.65 16 22 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C 0.15 3.05 6.15 -2.88 -0.02 3.03 16 27 C 0.13 1.96 5.11 -4.09 -0.02 1.93 16 28 C -0.10 -1.20 9.36 -39.58 -0.37 -1.57 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.10 0.84 7.66 -51.93 -0.40 0.44 16 36 H 0.10 0.74 7.87 -51.93 -0.41 0.33 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.57 5.94 -51.93 -0.31 0.26 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.90 6.33 -51.93 -0.33 0.57 16 41 H 0.08 1.45 7.82 -51.93 -0.41 1.05 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 44 H 0.06 1.04 6.12 -51.93 -0.32 0.72 16 45 H 0.04 1.02 7.60 -51.93 -0.39 0.62 16 46 H 0.05 1.22 7.29 -51.93 -0.38 0.84 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.04 0.79 8.02 -51.93 -0.42 0.37 16 49 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.09 1.58 6.86 -51.93 -0.36 1.22 16 52 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 401.73 15.07 6.05 6.05 Total: -1.00 -33.54 401.73 -11.41 -44.94 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.73 Total: -0.12 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -3.29 Total: -7.63 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.50 Total: -50.92 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.54 -11.41 -44.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054187120.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.830 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds