Wall clock time and date at job start Wed Apr 1 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47465 * 2 1 4 4 C 1.50706 * 109.46708 * 120.00184 * 2 1 3 5 5 C 1.38261 * 119.99733 * 299.99512 * 4 2 1 6 6 C 1.38214 * 119.99661 * 179.97438 * 5 4 2 7 7 C 1.38256 * 120.00160 * 0.02562 * 6 5 4 8 8 C 1.38211 * 120.00062 * 0.26318 * 7 6 5 9 9 C 1.50693 * 120.00162 * 179.71972 * 8 7 6 10 10 C 1.50709 * 109.47063 * 89.99684 * 9 8 7 11 11 O 1.21280 * 120.00024 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99760 * 180.02562 * 10 9 8 13 13 C 1.47390 * 135.85473 * 359.63545 * 12 10 9 14 14 C 1.52072 * 87.41143 * 154.38554 * 13 12 10 15 15 C 1.47392 * 135.85144 * 179.97438 * 12 10 9 16 16 C 1.53514 * 117.21159 * 267.27572 * 14 13 12 17 17 C 1.54632 * 102.70437 * 262.93235 * 16 14 13 18 18 N 1.47142 * 107.37472 * 339.38403 * 17 16 14 19 19 C 1.36939 * 125.57893 * 179.10957 * 18 17 16 20 20 H 1.07999 * 120.00415 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99809 * 359.97438 * 19 18 17 22 22 N 1.31625 * 120.00505 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00038 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47100 * 59.99436 * 23 21 19 25 25 H 1.48500 * 109.47399 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46667 * 299.99923 * 23 21 19 27 27 C 1.47753 * 108.84187 * 359.08769 * 18 17 16 28 28 C 1.38212 * 120.00228 * 119.97710 * 4 2 1 29 29 H 1.09005 * 109.47064 * 300.00396 * 1 2 3 30 30 H 1.09002 * 109.47013 * 59.99653 * 1 2 3 31 31 H 1.08999 * 109.47806 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47064 * 239.99603 * 2 1 3 33 33 H 1.09003 * 109.47005 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47487 * 299.99419 * 3 2 1 35 35 H 1.08995 * 109.47223 * 59.99908 * 3 2 1 36 36 H 1.07997 * 119.99874 * 359.97438 * 5 4 2 37 37 H 1.07999 * 119.99762 * 179.97438 * 6 5 4 38 38 H 1.08002 * 119.99676 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47285 * 209.99452 * 9 8 7 40 40 H 1.08993 * 109.47149 * 329.99947 * 9 8 7 41 41 H 1.09006 * 113.54171 * 268.99303 * 13 12 10 42 42 H 1.09001 * 113.54819 * 39.67307 * 13 12 10 43 43 H 1.09002 * 113.54249 * 320.32694 * 15 12 10 44 44 H 1.09001 * 113.54321 * 90.93298 * 15 12 10 45 45 H 1.09008 * 110.76234 * 21.23562 * 16 14 13 46 46 H 1.09002 * 110.76673 * 144.62618 * 16 14 13 47 47 H 1.08995 * 109.86536 * 98.83421 * 17 16 14 48 48 H 1.09001 * 109.86357 * 219.93250 * 17 16 14 49 49 H 0.96992 * 120.00199 * 180.02562 * 22 21 19 50 50 H 1.08997 * 110.40816 * 263.50373 * 27 18 17 51 51 H 1.09003 * 110.40640 * 141.07866 * 27 18 17 52 52 H 1.08000 * 119.99937 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2305 5 6 1.6982 -0.2381 2.4862 6 6 2.1584 -0.8900 3.6148 7 6 2.9531 -2.0142 3.4879 8 6 3.2920 -2.4829 2.2327 9 6 4.1634 -3.7045 2.0944 10 6 3.2969 -4.9366 2.0442 11 8 2.0906 -4.8329 2.1142 12 7 3.8627 -6.1538 1.9224 13 6 5.2367 -6.6746 1.8064 14 6 4.7197 -7.9761 2.3992 15 6 3.3764 -7.5428 1.8414 16 6 4.8206 -8.1429 3.9219 17 6 6.1234 -8.9589 4.0890 18 7 6.3954 -9.6207 2.8033 19 6 7.4706 -10.4244 2.5326 20 1 7.5816 -10.8662 1.5534 21 6 8.4179 -10.6711 3.5168 22 7 8.2830 -10.1322 4.7101 23 14 9.8850 -11.7668 3.1473 24 1 10.6710 -11.1820 2.0313 25 1 10.7419 -11.8709 4.3557 26 1 9.4080 -13.1192 2.7614 27 6 5.3182 -9.2767 1.8523 28 6 2.8264 -1.8345 1.1038 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4423 0.0005 34 1 1.6769 1.9563 -0.8900 35 1 1.6768 1.9562 0.8899 36 1 1.0778 0.6403 2.5852 37 1 1.8978 -0.5207 4.5956 38 1 3.3130 -2.5233 4.3698 39 1 4.7466 -3.6329 1.1764 40 1 4.8371 -3.7688 2.9488 41 1 5.5800 -6.7715 0.7764 42 1 5.9536 -6.1581 2.4446 43 1 2.5402 -7.7510 2.5089 44 1 3.1973 -7.8826 0.8213 45 1 4.9065 -7.1730 4.4120 46 1 3.9651 -8.6975 4.3075 47 1 6.9475 -8.2927 4.3443 48 1 5.9940 -9.7072 4.8709 49 1 8.9451 -10.3043 5.3976 50 1 4.5637 -10.0631 1.8319 51 1 5.7283 -9.1164 0.8552 52 1 3.0867 -2.2040 0.1229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072896236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:24 Heat of formation + Delta-G solvation = 41.637691 kcal Electronic energy + Delta-G solvation = -29323.878145 eV Core-core repulsion = 25482.718873 eV Total energy + Delta-G solvation = -3841.159272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -40.71714 -39.84223 -38.21651 -35.82747 -35.57045 -32.66648 -32.17341 -30.28314 -29.68868 -28.87023 -27.44085 -27.42659 -25.97452 -25.46951 -23.71849 -23.25893 -22.27224 -20.34140 -19.98623 -19.05253 -18.29488 -16.93845 -16.84550 -16.59832 -16.08236 -15.78785 -15.43426 -15.05926 -14.74388 -14.33693 -14.27579 -13.97214 -13.82345 -13.77082 -13.63813 -13.17944 -12.99645 -12.63278 -12.45992 -12.33557 -12.22265 -12.12388 -12.03030 -11.94962 -11.83507 -11.46090 -11.40581 -11.03127 -10.93480 -10.87013 -10.81685 -10.68606 -10.44251 -10.20984 -10.15688 -9.87881 -9.70423 -9.59058 -8.87897 -8.68816 -8.62586 -8.53429 -6.87016 -5.74148 -3.07973 1.23302 1.32080 2.72325 2.93877 3.38461 3.43090 3.44222 3.67612 4.36674 4.43270 4.49709 4.55579 4.65675 4.72347 4.84024 4.92095 4.94785 5.00744 5.06584 5.21202 5.26424 5.32292 5.33613 5.36186 5.43473 5.46434 5.52873 5.53134 5.60761 5.64558 5.67970 5.71497 5.78422 5.81285 5.84641 5.92471 5.95788 5.97596 6.00437 6.16257 6.21098 6.37840 6.43675 6.47339 6.49622 6.52607 6.64097 6.68546 6.91508 7.52198 7.58444 7.79071 7.86584 8.21789 8.25918 9.18567 9.78595 10.44152 11.37320 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024594 B = 0.001919 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.233209 B =14584.543257 C =14693.787912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.077 4.077 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.108 4.108 8 C -0.059 4.059 9 C -0.098 4.098 10 C 0.542 3.458 11 O -0.541 6.541 12 N -0.645 5.645 13 C 0.119 3.881 14 C -0.105 4.105 15 C 0.119 3.881 16 C -0.117 4.117 17 C 0.180 3.820 18 N -0.605 5.605 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.153 3.847 28 C -0.102 4.102 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.044 0.956 49 H 0.253 0.747 50 H 0.026 0.974 51 H 0.042 0.958 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 20.321 -7.005 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.077 4.077 5 C -0.135 4.135 6 C -0.135 4.135 7 C -0.126 4.126 8 C -0.059 4.059 9 C -0.137 4.137 10 C 0.332 3.668 11 O -0.418 6.418 12 N -0.381 5.381 13 C -0.003 4.003 14 C -0.107 4.107 15 C -0.004 4.004 16 C -0.155 4.155 17 C 0.055 3.945 18 N -0.331 5.331 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.026 3.974 28 C -0.121 4.121 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.044 0.956 51 H 0.060 0.940 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.231 20.523 -6.815 24.844 hybrid contribution 0.887 -0.702 -0.108 1.136 sum -11.345 19.820 -6.923 23.864 Atomic orbital electron populations 1.21854 0.94337 1.02210 1.01726 1.20119 0.96011 0.95936 0.95470 1.21851 1.01232 0.95138 1.01802 1.19763 0.97653 0.95659 0.94648 1.20904 1.00466 1.00144 0.92006 1.21058 0.98068 0.95919 0.98459 1.20982 0.98419 0.96487 0.96724 1.19271 0.98049 0.95036 0.93567 1.20612 0.97617 0.90260 1.05252 1.20008 0.88221 0.82462 0.76141 1.90710 1.14743 1.85697 1.50661 1.49873 1.10937 1.05123 1.72125 1.22897 0.84208 0.92079 1.01123 1.22173 0.94617 0.95682 0.98185 1.22750 0.97896 0.78701 1.01030 1.22467 1.00908 1.00379 0.91758 1.21221 0.90875 0.94076 0.88315 1.44533 1.23686 1.56586 1.08314 1.18996 0.98193 1.21192 0.97308 0.90451 1.24801 0.99074 1.00609 0.95937 1.69946 1.36279 1.47638 1.03083 0.86204 0.82327 0.80326 0.76904 1.21177 1.21644 1.21192 1.21140 0.91097 0.91478 0.93643 1.20847 0.97973 0.95325 0.97908 0.92500 0.92491 0.92378 0.90565 0.92528 0.92474 0.92496 0.86420 0.86160 0.86241 0.88140 0.87897 0.89534 0.90095 0.90575 0.89912 0.92132 0.91838 0.93516 0.93827 0.93688 0.95605 0.93951 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.01 37.16 0.33 -0.77 16 2 C -0.06 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.14 -0.97 9.01 37.15 0.33 -0.64 16 4 C -0.08 -0.80 4.78 -104.62 -0.50 -1.30 16 5 C -0.12 -1.17 8.71 -39.58 -0.34 -1.51 16 6 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 7 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 8 C -0.06 -0.71 4.37 -104.63 -0.46 -1.17 16 9 C -0.10 -1.12 5.65 -29.03 -0.16 -1.28 16 10 C 0.54 8.08 8.07 -10.98 -0.09 7.99 16 11 O -0.54 -10.02 16.81 5.56 0.09 -9.92 16 12 N -0.65 -9.22 3.70 -185.72 -0.69 -9.91 16 13 C 0.12 1.65 7.78 -7.33 -0.06 1.59 16 14 C -0.10 -1.66 1.06 -155.23 -0.16 -1.83 16 15 C 0.12 1.68 8.02 -7.48 -0.06 1.62 16 16 C -0.12 -2.07 6.40 -25.61 -0.16 -2.24 16 17 C 0.18 4.14 5.39 -2.83 -0.02 4.12 16 18 N -0.60 -14.52 3.41 -170.54 -0.58 -15.10 16 19 C -0.23 -6.09 10.28 -15.06 -0.15 -6.25 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -26.30 10.30 55.49 0.57 -25.73 16 23 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.15 2.87 6.70 -3.22 -0.02 2.85 16 28 C -0.10 -1.17 9.33 -39.58 -0.37 -1.54 16 29 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.37 7.39 -51.93 -0.38 -0.01 16 36 H 0.12 0.94 7.10 -52.49 -0.37 0.57 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 40 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 41 H 0.09 1.08 8.06 -51.93 -0.42 0.67 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.08 1.11 8.13 -51.93 -0.42 0.68 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.01 8.07 -51.92 -0.42 0.59 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.05 1.19 7.38 -51.93 -0.38 0.80 16 48 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 50 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 52 H 0.12 1.21 7.95 -52.49 -0.42 0.79 16 LS Contribution 416.40 15.07 6.28 6.28 Total: -1.00 -31.92 416.40 -11.43 -43.36 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -9.03 Total: -0.78 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.05 Total: -4.68 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.70 Total: -50.73 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.92 -11.43 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072896236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.995 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds