Wall clock time and date at job start Wed Apr 1 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47465 * 2 1 4 4 C 1.50706 * 109.46708 * 120.00184 * 2 1 3 5 5 C 1.38261 * 119.99733 * 299.99512 * 4 2 1 6 6 C 1.38214 * 119.99661 * 179.97438 * 5 4 2 7 7 C 1.38256 * 120.00160 * 0.02562 * 6 5 4 8 8 C 1.38211 * 120.00062 * 0.26318 * 7 6 5 9 9 C 1.50693 * 120.00162 * 179.71972 * 8 7 6 10 10 C 1.50709 * 109.47063 * 89.99684 * 9 8 7 11 11 O 1.21280 * 120.00024 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99760 * 180.02562 * 10 9 8 13 13 C 1.47390 * 135.85473 * 359.63545 * 12 10 9 14 14 C 1.52072 * 87.41143 * 154.38554 * 13 12 10 15 15 C 1.47392 * 135.85144 * 179.97438 * 12 10 9 16 16 C 1.53514 * 117.21159 * 267.27572 * 14 13 12 17 17 C 1.54632 * 102.70437 * 262.93235 * 16 14 13 18 18 N 1.47142 * 107.37472 * 339.38403 * 17 16 14 19 19 C 1.36939 * 125.57893 * 179.10957 * 18 17 16 20 20 H 1.07999 * 120.00415 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99809 * 359.97438 * 19 18 17 22 22 N 1.31625 * 120.00505 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00038 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47100 * 59.99436 * 23 21 19 25 25 H 1.48500 * 109.47399 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46667 * 299.99923 * 23 21 19 27 27 C 1.47753 * 108.84187 * 359.08769 * 18 17 16 28 28 C 1.38212 * 120.00228 * 119.97710 * 4 2 1 29 29 H 1.09005 * 109.47064 * 300.00396 * 1 2 3 30 30 H 1.09002 * 109.47013 * 59.99653 * 1 2 3 31 31 H 1.08999 * 109.47806 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47064 * 239.99603 * 2 1 3 33 33 H 1.09003 * 109.47005 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47487 * 299.99419 * 3 2 1 35 35 H 1.08995 * 109.47223 * 59.99908 * 3 2 1 36 36 H 1.07997 * 119.99874 * 359.97438 * 5 4 2 37 37 H 1.07999 * 119.99762 * 179.97438 * 6 5 4 38 38 H 1.08002 * 119.99676 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47285 * 209.99452 * 9 8 7 40 40 H 1.08993 * 109.47149 * 329.99947 * 9 8 7 41 41 H 1.09006 * 113.54171 * 268.99303 * 13 12 10 42 42 H 1.09001 * 113.54819 * 39.67307 * 13 12 10 43 43 H 1.09002 * 113.54249 * 320.32694 * 15 12 10 44 44 H 1.09001 * 113.54321 * 90.93298 * 15 12 10 45 45 H 1.09008 * 110.76234 * 21.23562 * 16 14 13 46 46 H 1.09002 * 110.76673 * 144.62618 * 16 14 13 47 47 H 1.08995 * 109.86536 * 98.83421 * 17 16 14 48 48 H 1.09001 * 109.86357 * 219.93250 * 17 16 14 49 49 H 0.96992 * 120.00199 * 180.02562 * 22 21 19 50 50 H 1.08997 * 110.40816 * 263.50373 * 27 18 17 51 51 H 1.09003 * 110.40640 * 141.07866 * 27 18 17 52 52 H 1.08000 * 119.99937 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2305 5 6 1.6982 -0.2381 2.4862 6 6 2.1584 -0.8900 3.6148 7 6 2.9531 -2.0142 3.4879 8 6 3.2920 -2.4829 2.2327 9 6 4.1634 -3.7045 2.0944 10 6 3.2969 -4.9366 2.0442 11 8 2.0906 -4.8329 2.1142 12 7 3.8627 -6.1538 1.9224 13 6 5.2367 -6.6746 1.8064 14 6 4.7197 -7.9761 2.3992 15 6 3.3764 -7.5428 1.8414 16 6 4.8206 -8.1429 3.9219 17 6 6.1234 -8.9589 4.0890 18 7 6.3954 -9.6207 2.8033 19 6 7.4706 -10.4244 2.5326 20 1 7.5816 -10.8662 1.5534 21 6 8.4179 -10.6711 3.5168 22 7 8.2830 -10.1322 4.7101 23 14 9.8850 -11.7668 3.1473 24 1 10.6710 -11.1820 2.0313 25 1 10.7419 -11.8709 4.3557 26 1 9.4080 -13.1192 2.7614 27 6 5.3182 -9.2767 1.8523 28 6 2.8264 -1.8345 1.1038 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4423 0.0005 34 1 1.6769 1.9563 -0.8900 35 1 1.6768 1.9562 0.8899 36 1 1.0778 0.6403 2.5852 37 1 1.8978 -0.5207 4.5956 38 1 3.3130 -2.5233 4.3698 39 1 4.7466 -3.6329 1.1764 40 1 4.8371 -3.7688 2.9488 41 1 5.5800 -6.7715 0.7764 42 1 5.9536 -6.1581 2.4446 43 1 2.5402 -7.7510 2.5089 44 1 3.1973 -7.8826 0.8213 45 1 4.9065 -7.1730 4.4120 46 1 3.9651 -8.6975 4.3075 47 1 6.9475 -8.2927 4.3443 48 1 5.9940 -9.7072 4.8709 49 1 8.9451 -10.3043 5.3976 50 1 4.5637 -10.0631 1.8319 51 1 5.7283 -9.1164 0.8552 52 1 3.0867 -2.2040 0.1229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072896236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:23 Heat of formation + Delta-G solvation = 25.941085 kcal Electronic energy + Delta-G solvation = -29324.558801 eV Core-core repulsion = 25482.718873 eV Total energy + Delta-G solvation = -3841.839928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.93034 -40.70881 -39.41392 -37.29989 -36.42316 -34.09918 -33.45479 -31.37225 -30.93665 -30.34999 -28.57286 -27.97371 -27.19112 -26.93541 -25.32644 -24.01671 -23.09117 -22.12068 -20.94804 -20.10254 -19.59045 -18.57044 -17.94035 -17.64070 -17.05659 -16.95867 -16.62024 -16.39495 -15.98612 -15.71899 -15.59647 -15.11562 -14.67956 -14.63495 -14.46147 -14.21527 -14.12190 -13.89173 -13.71968 -13.63520 -13.28590 -13.22590 -12.97797 -12.90510 -12.87172 -12.83527 -12.70602 -12.24044 -12.18447 -12.05969 -12.02047 -11.90306 -11.80501 -11.65979 -11.53353 -11.50814 -11.20761 -10.87393 -10.64710 -9.72932 -9.67881 -9.49247 -8.83857 -7.79901 -5.14596 0.41219 0.51534 1.49986 1.52356 1.58422 1.59873 1.84058 2.53565 2.84284 3.27850 3.41197 3.56606 3.61599 3.68964 3.76452 3.84444 3.95786 4.08908 4.13637 4.22506 4.24665 4.32960 4.33227 4.45065 4.49581 4.53989 4.58880 4.62648 4.64299 4.69091 4.72404 4.78208 4.81471 4.87055 4.93187 4.97626 4.99686 5.05657 5.10308 5.17595 5.19011 5.21689 5.24195 5.33423 5.39640 5.51789 5.59259 5.66978 5.69557 5.74831 5.81767 6.13812 6.23964 6.72487 7.11733 7.15141 7.82710 8.46959 9.30282 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024594 B = 0.001919 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.233209 B =14584.543257 C =14693.787912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 C -0.139 4.139 4 C -0.082 4.082 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.129 4.129 8 C -0.076 4.076 9 C -0.091 4.091 10 C 0.541 3.459 11 O -0.581 6.581 12 N -0.644 5.644 13 C 0.127 3.873 14 C -0.100 4.100 15 C 0.124 3.876 16 C -0.103 4.103 17 C 0.191 3.809 18 N -0.625 5.625 19 C -0.235 4.235 20 H 0.086 0.914 21 C -0.068 4.068 22 N -0.953 5.953 23 Si 0.975 3.025 24 H -0.275 1.275 25 H -0.299 1.299 26 H -0.280 1.280 27 C 0.151 3.849 28 C -0.119 4.119 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.014 0.986 48 H 0.002 0.998 49 H 0.245 0.755 50 H 0.031 0.969 51 H 0.058 0.942 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.226 21.703 -8.892 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 C -0.196 4.196 4 C -0.082 4.082 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.076 4.076 9 C -0.130 4.130 10 C 0.332 3.668 11 O -0.461 6.461 12 N -0.379 5.379 13 C 0.005 3.995 14 C -0.102 4.102 15 C 0.001 3.999 16 C -0.141 4.141 17 C 0.065 3.935 18 N -0.351 5.351 19 C -0.364 4.364 20 H 0.104 0.896 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.804 3.196 24 H -0.201 1.201 25 H -0.226 1.226 26 H -0.206 1.206 27 C 0.026 3.974 28 C -0.137 4.137 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.033 0.967 48 H 0.021 0.979 49 H 0.054 0.946 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.781 21.903 -8.740 26.823 hybrid contribution 0.992 -1.146 0.461 1.584 sum -11.789 20.757 -8.279 25.266 Atomic orbital electron populations 1.21841 0.93914 1.01462 1.02716 1.20169 0.96299 0.96609 0.94493 1.21821 1.00953 0.94201 1.02661 1.20073 0.97046 0.95373 0.95721 1.21188 1.00383 1.00661 0.91758 1.21358 0.97589 0.95573 0.99676 1.21189 0.99266 0.97327 0.96877 1.19439 0.98714 0.95477 0.93974 1.20631 0.97196 0.88401 1.06803 1.20550 0.88009 0.83172 0.75034 1.90691 1.16615 1.86258 1.52580 1.49870 1.11116 1.05140 1.71725 1.22936 0.83939 0.90422 1.02237 1.21995 0.96403 0.95405 0.96352 1.22760 0.96402 0.78614 1.02101 1.22261 0.98076 0.99935 0.93814 1.20909 0.92389 0.92862 0.87299 1.44818 1.24315 1.56308 1.09703 1.19423 0.98694 1.20807 0.97475 0.89584 1.25614 1.01970 1.02527 0.96009 1.70174 1.36894 1.49281 1.03856 0.85195 0.79169 0.78796 0.76426 1.20085 1.22581 1.20580 1.21304 0.89864 0.92858 0.93379 1.21059 0.98604 0.95987 0.98095 0.92082 0.90969 0.93953 0.90546 0.92936 0.91159 0.92105 0.84466 0.84312 0.85991 0.86051 0.86699 0.87332 0.89882 0.90930 0.87616 0.91009 0.91219 0.96726 0.97941 0.94603 0.95096 0.92338 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.01 71.98 0.65 -1.30 16 2 C -0.06 -0.85 3.09 -11.54 -0.04 -0.88 16 3 C -0.14 -1.61 9.01 71.98 0.65 -0.96 16 4 C -0.08 -1.60 4.78 -19.86 -0.09 -1.70 16 5 C -0.12 -2.27 8.71 22.27 0.19 -2.07 16 6 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 7 C -0.13 -2.93 9.70 22.27 0.22 -2.72 16 8 C -0.08 -1.77 4.37 -19.87 -0.09 -1.86 16 9 C -0.09 -1.95 5.65 29.10 0.16 -1.78 16 10 C 0.54 15.32 8.07 87.66 0.71 16.02 16 11 O -0.58 -21.12 16.81 -3.03 -0.05 -21.17 16 12 N -0.64 -16.94 3.70 -859.88 -3.18 -20.12 16 13 C 0.13 3.17 7.78 83.76 0.65 3.82 16 14 C -0.10 -2.97 1.06 -52.63 -0.06 -3.03 16 15 C 0.12 3.20 8.02 83.66 0.67 3.87 16 16 C -0.10 -3.59 6.40 31.32 0.20 -3.39 16 17 C 0.19 9.00 5.39 86.81 0.47 9.47 16 18 N -0.62 -30.00 3.41 -693.48 -2.36 -32.37 16 19 C -0.23 -12.51 10.28 84.03 0.86 -11.64 16 20 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 22 N -0.95 -56.16 10.30 21.65 0.22 -55.93 16 23 Si 0.98 44.58 29.55 68.60 2.03 46.61 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 C 0.15 5.41 6.70 86.23 0.58 5.99 16 28 C -0.12 -2.64 9.33 22.27 0.21 -2.43 16 29 H 0.06 0.77 7.39 -2.38 -0.02 0.76 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.11 7.88 -2.38 -0.02 1.09 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.65 7.39 -2.39 -0.02 0.64 16 36 H 0.14 1.91 7.10 -2.91 -0.02 1.89 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.12 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.12 2.05 8.09 -2.39 -0.02 2.03 16 40 H 0.11 2.16 8.08 -2.39 -0.02 2.14 16 41 H 0.11 2.32 8.06 -2.38 -0.02 2.30 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 44 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.07 2.35 8.07 -2.38 -0.02 2.33 16 46 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 48 H 0.00 0.13 7.49 -2.39 -0.02 0.11 16 49 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 50 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.06 1.92 8.00 -2.39 -0.02 1.90 16 52 H 0.12 2.43 7.95 -2.91 -0.02 2.41 16 Total: -1.00 -70.49 416.40 4.17 -66.32 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.88 Total: 16.82 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.64 Total: -0.15 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -5.32 Total: -108.42 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.49 4.17 -66.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072896236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.260 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds