Wall clock time and date at job start Wed Apr 1 2020 03:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47225 * 2 1 4 4 C 1.38235 * 120.00216 * 89.99741 * 3 2 1 5 5 C 1.38236 * 120.00272 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99542 * 359.95935 * 5 4 3 7 7 C 1.50707 * 119.99586 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46821 * 0.02562 * 7 6 5 9 9 C 1.53000 * 109.46959 * 240.00120 * 7 6 5 10 10 C 1.50701 * 109.47068 * 120.00118 * 7 6 5 11 11 O 1.21289 * 119.99724 * 9.29630 * 10 7 6 12 12 N 1.34769 * 119.99899 * 189.29596 * 10 7 6 13 13 C 1.47852 * 134.36602 * 4.92393 * 12 10 7 14 14 C 1.52566 * 85.65898 * 156.37256 * 13 12 10 15 15 C 1.47857 * 134.36223 * 184.92160 * 12 10 7 16 16 C 1.53925 * 115.92064 * 264.97420 * 14 13 12 17 17 C 1.55156 * 101.43198 * 264.40103 * 16 14 13 18 18 N 1.47543 * 105.01223 * 324.38226 * 17 16 14 19 19 C 1.36936 * 125.66087 * 203.91503 * 18 17 16 20 20 H 1.08001 * 120.00050 * 144.99591 * 19 18 17 21 21 C 1.38816 * 119.99816 * 325.00282 * 19 18 17 22 22 N 1.31615 * 119.99863 * 167.17400 * 21 19 18 23 23 Si 1.86797 * 120.00023 * 347.16323 * 21 19 18 24 24 H 1.48502 * 109.46880 * 85.21391 * 23 21 19 25 25 H 1.48503 * 109.47253 * 205.21156 * 23 21 19 26 26 H 1.48494 * 109.47306 * 325.21505 * 23 21 19 27 27 C 1.47362 * 108.68198 * 23.91547 * 18 17 16 28 28 C 1.38229 * 120.00400 * 0.27519 * 6 5 4 29 29 C 1.38231 * 120.00006 * 270.02502 * 3 2 1 30 30 H 1.08997 * 109.46853 * 299.99836 * 1 2 3 31 31 H 1.08995 * 109.47328 * 60.00444 * 1 2 3 32 32 H 1.09008 * 109.46958 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46921 * 239.99766 * 2 1 3 34 34 H 1.09007 * 109.47209 * 119.99892 * 2 1 3 35 35 H 1.07999 * 119.99920 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.99715 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47028 * 294.58316 * 9 7 6 38 38 H 1.08992 * 109.47136 * 54.58332 * 9 7 6 39 39 H 1.08998 * 109.46605 * 174.58362 * 9 7 6 40 40 H 1.08996 * 113.84049 * 42.18789 * 13 12 10 41 41 H 1.08997 * 113.95234 * 270.57079 * 13 12 10 42 42 H 1.09002 * 113.83923 * 89.44042 * 15 12 10 43 43 H 1.08999 * 113.84055 * 317.81547 * 15 12 10 44 44 H 1.09002 * 111.00666 * 146.37563 * 16 14 13 45 45 H 1.09000 * 111.08039 * 22.46007 * 16 14 13 46 46 H 1.08998 * 110.33175 * 205.49975 * 17 16 14 47 47 H 1.08997 * 110.42332 * 83.31054 * 17 16 14 48 48 H 0.97006 * 120.00391 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.98453 * 117.31202 * 27 18 17 50 50 H 1.09001 * 109.98617 * 238.57742 * 27 18 17 51 51 H 1.08004 * 120.00172 * 179.72547 * 28 6 5 52 52 H 1.08002 * 120.00434 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3759 1.1971 6 6 2.9537 4.0274 0.0000 7 6 3.4550 5.4486 0.0000 8 1 3.5755 5.7913 1.0276 9 6 2.4470 6.3449 -0.7222 10 6 4.7830 5.5129 -0.7096 11 8 5.1947 4.5457 -1.3146 12 7 5.5131 6.6451 -0.6717 13 6 5.3725 7.9432 0.0220 14 6 6.8844 8.0637 -0.1433 15 6 6.7738 7.0839 -1.3074 16 6 7.7316 7.5956 1.0535 17 6 7.9767 8.9340 1.7990 18 7 8.1153 9.9451 0.7335 19 6 8.7757 11.1393 0.8472 20 1 9.3130 11.5419 0.0012 21 6 8.7546 11.8324 2.0498 22 7 9.5819 12.8373 2.2448 23 14 7.5519 11.3389 3.3912 24 1 8.1382 10.2419 4.2025 25 1 7.2774 12.5081 4.2645 26 1 6.2842 10.8742 2.7730 27 6 7.4251 9.4567 -0.4734 28 6 2.7188 3.3774 -1.1971 29 6 2.2622 2.0726 -1.1971 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0831 1.5632 2.1324 36 1 2.9026 3.8851 2.1325 37 1 2.3985 6.0630 -1.7740 38 1 1.4635 6.2248 -0.2681 39 1 2.7611 7.3853 -0.6390 40 1 5.0483 7.8557 1.0589 41 1 4.8072 8.6864 -0.5402 42 1 6.6349 7.5642 -2.2760 43 1 7.5518 6.3205 -1.3162 44 1 8.6714 7.1563 0.7190 45 1 7.1755 6.8962 1.6778 46 1 8.8918 8.8771 2.3885 47 1 7.1283 9.1732 2.4401 48 1 9.5670 13.3218 3.0850 49 1 6.6024 10.1248 -0.7282 50 1 8.1269 9.3963 -1.3052 51 1 2.8948 3.8879 -2.1325 52 1 2.0823 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073059871.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:42 Heat of formation + Delta-G solvation = 39.831099 kcal Electronic energy + Delta-G solvation = -29778.817041 eV Core-core repulsion = 25937.579429 eV Total energy + Delta-G solvation = -3841.237611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -40.90761 -39.86282 -38.33841 -35.90359 -35.22431 -32.97896 -32.26871 -31.06757 -30.08438 -29.05610 -28.58405 -26.38639 -26.25294 -24.95451 -23.65118 -22.93384 -22.71136 -21.00830 -20.70787 -19.06964 -18.56576 -17.13769 -16.72124 -16.65555 -16.01652 -15.68336 -15.58045 -15.20490 -15.09087 -14.70820 -14.19291 -14.05523 -13.86126 -13.62030 -13.51341 -13.38764 -13.23894 -12.97176 -12.77779 -12.68868 -12.50973 -12.32852 -12.04290 -11.93772 -11.86214 -11.69666 -11.47247 -11.39646 -11.24892 -10.99022 -10.98552 -10.95987 -10.61391 -10.42906 -10.31220 -10.00729 -9.63555 -9.57167 -8.99204 -8.68721 -8.67469 -8.64478 -6.87936 -6.01031 -3.47103 1.15486 1.31400 2.60169 2.79535 3.30494 3.40937 3.44580 3.61809 4.28855 4.34810 4.46431 4.48478 4.54388 4.60750 4.72773 4.84430 4.84785 4.88981 4.96984 5.03809 5.05632 5.18748 5.23290 5.31033 5.33471 5.34621 5.38948 5.45157 5.45657 5.50377 5.54130 5.57080 5.65916 5.67767 5.76039 5.80827 5.84794 5.84968 5.91403 5.95859 5.97975 6.09652 6.26026 6.28347 6.46360 6.48922 6.49351 6.55871 6.60943 6.70574 6.87049 7.69847 7.85101 8.14763 8.29642 8.79492 9.62040 10.17675 11.15074 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.002200 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.148326 B =12723.681431 C =13198.594706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.072 4.072 7 C -0.067 4.067 8 H 0.099 0.901 9 C -0.137 4.137 10 C 0.540 3.460 11 O -0.538 6.538 12 N -0.640 5.640 13 C 0.116 3.884 14 C -0.106 4.106 15 C 0.125 3.875 16 C -0.105 4.105 17 C 0.113 3.887 18 N -0.608 5.608 19 C -0.247 4.247 20 H 0.085 0.915 21 C 0.031 3.969 22 N -0.910 5.910 23 Si 0.894 3.106 24 H -0.285 1.285 25 H -0.302 1.302 26 H -0.272 1.272 27 C 0.149 3.851 28 C -0.076 4.076 29 C -0.121 4.121 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.024 0.976 48 H 0.264 0.736 49 H 0.036 0.964 50 H 0.040 0.960 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.378 -20.903 -4.597 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.127 4.127 6 C -0.073 4.073 7 C -0.088 4.088 8 H 0.117 0.883 9 C -0.195 4.195 10 C 0.329 3.671 11 O -0.415 6.415 12 N -0.375 5.375 13 C -0.006 4.006 14 C -0.107 4.107 15 C 0.002 3.998 16 C -0.144 4.144 17 C -0.012 4.012 18 N -0.335 5.335 19 C -0.375 4.375 20 H 0.103 0.897 21 C -0.169 4.169 22 N -0.552 5.552 23 Si 0.724 3.276 24 H -0.212 1.212 25 H -0.230 1.230 26 H -0.198 1.198 27 C 0.023 3.977 28 C -0.094 4.094 29 C -0.139 4.139 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.058 0.942 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.169 -21.381 -4.817 28.469 hybrid contribution -0.566 -0.018 0.927 1.086 sum -18.735 -21.399 -3.890 28.707 Atomic orbital electron populations 1.21744 0.94781 1.01582 1.02212 1.20539 0.96106 0.92828 1.02773 1.19869 0.99162 0.96086 0.93259 1.20911 1.00912 0.94759 0.97437 1.20993 0.99599 0.94908 0.97200 1.19314 0.99980 0.94351 0.93643 1.20209 0.92951 0.94168 1.01498 0.88267 1.21736 0.98276 0.98838 1.00615 1.20097 0.84910 0.81473 0.80639 1.90708 1.71230 1.34924 1.44605 1.50159 1.25522 1.13264 1.48598 1.23189 0.96444 0.83077 0.97929 1.22478 0.94531 0.97175 0.96501 1.23021 0.85111 0.95043 0.96588 1.22412 0.98942 0.97700 0.95298 1.22049 0.99092 0.87557 0.92495 1.44727 1.62173 1.17667 1.08941 1.18566 1.24633 0.94279 1.00000 0.89743 1.25433 0.97808 0.95294 0.98398 1.69763 1.37266 1.22638 1.25545 0.86733 0.82783 0.76435 0.81641 1.21187 1.23005 1.19766 1.21127 0.95010 0.89976 0.91588 1.20893 0.96437 0.94490 0.97608 1.20968 1.00673 0.94878 0.97416 0.92580 0.92565 0.92498 0.91116 0.91139 0.86268 0.86178 0.91995 0.91192 0.91506 0.89998 0.89140 0.89492 0.89942 0.90574 0.91676 0.92578 0.95858 0.92568 0.94564 0.94226 0.86267 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.09 -0.62 6.06 -27.89 -0.17 -0.79 16 3 C -0.08 -0.81 5.13 -104.63 -0.54 -1.35 16 4 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 5 C -0.11 -1.15 9.67 -39.58 -0.38 -1.53 16 6 C -0.07 -0.83 4.49 -104.62 -0.47 -1.30 16 7 C -0.07 -0.73 2.64 -92.92 -0.25 -0.97 16 8 H 0.10 0.97 7.88 -51.93 -0.41 0.56 16 9 C -0.14 -1.22 8.91 37.16 0.33 -0.89 16 10 C 0.54 7.47 7.21 -10.99 -0.08 7.39 16 11 O -0.54 -9.25 15.56 5.55 0.09 -9.16 16 12 N -0.64 -8.33 3.62 -185.66 -0.67 -9.00 16 13 C 0.12 1.43 7.21 -3.52 -0.03 1.41 16 14 C -0.11 -1.53 0.98 -154.68 -0.15 -1.68 16 15 C 0.12 1.62 8.16 -3.53 -0.03 1.59 16 16 C -0.11 -1.67 6.42 -25.11 -0.16 -1.83 16 17 C 0.11 2.30 4.94 -2.33 -0.01 2.28 16 18 N -0.61 -13.88 3.01 -170.35 -0.51 -14.39 16 19 C -0.25 -6.78 10.55 -15.06 -0.16 -6.94 16 20 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 21 C 0.03 0.87 5.48 -17.43 -0.10 0.77 16 22 N -0.91 -27.46 13.97 55.49 0.78 -26.69 16 23 Si 0.89 21.98 24.52 -169.99 -4.17 17.81 16 24 H -0.29 -6.82 7.10 56.52 0.40 -6.42 16 25 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.27 -6.43 6.64 56.52 0.38 -6.05 16 27 C 0.15 2.67 6.75 -3.56 -0.02 2.65 16 28 C -0.08 -0.89 7.91 -39.58 -0.31 -1.21 16 29 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.06 7.95 -52.49 -0.42 0.64 16 37 H 0.06 0.57 7.57 -51.93 -0.39 0.17 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.56 7.48 -51.93 -0.39 0.17 16 40 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.09 0.99 8.00 -51.93 -0.42 0.58 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 46 H 0.06 1.22 7.89 -51.93 -0.41 0.81 16 47 H 0.02 0.50 5.09 -51.93 -0.26 0.23 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.04 0.65 7.86 -51.93 -0.41 0.24 16 50 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 51 H 0.12 1.41 7.37 -52.48 -0.39 1.02 16 52 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 410.28 15.07 6.18 6.18 Total: -1.00 -32.66 410.28 -10.21 -42.87 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.98 Total: -1.45 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.92 Total: -6.16 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.41 Total: -50.08 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.17 Total: 17.81 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.66 -10.21 -42.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073059871.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.698 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds