Wall clock time and date at job start Wed Apr 1 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46764 * 2 1 4 4 C 1.38241 * 119.99748 * 90.00600 * 3 2 1 5 5 C 1.38235 * 120.00169 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99433 * 359.95473 * 5 4 3 7 7 C 1.50706 * 119.99440 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47166 * 0.02562 * 7 6 5 9 9 C 1.53006 * 109.46704 * 120.00153 * 7 6 5 10 10 C 1.50693 * 109.46987 * 240.00206 * 7 6 5 11 11 O 1.21283 * 120.00488 * 336.36739 * 10 7 6 12 12 N 1.34777 * 119.99881 * 156.37328 * 10 7 6 13 13 C 1.47393 * 135.85453 * 185.58930 * 12 10 7 14 14 C 1.52083 * 87.41089 * 154.38607 * 13 12 10 15 15 C 1.47398 * 135.85411 * 5.96052 * 12 10 7 16 16 C 1.53507 * 117.21163 * 267.28357 * 14 13 12 17 17 C 1.54635 * 102.70259 * 262.92530 * 16 14 13 18 18 N 1.47148 * 107.37793 * 339.39128 * 17 16 14 19 19 C 1.36933 * 125.58054 * 179.04148 * 18 17 16 20 20 H 1.08002 * 119.99597 * 180.02562 * 19 18 17 21 21 C 1.38812 * 119.99964 * 0.02562 * 19 18 17 22 22 N 1.31613 * 120.00061 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99609 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47127 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46799 * 120.00228 * 23 21 19 26 26 H 1.48498 * 109.46896 * 239.99836 * 23 21 19 27 27 C 1.47758 * 108.83503 * 359.08338 * 18 17 16 28 28 C 1.38228 * 120.00479 * 0.27956 * 6 5 4 29 29 C 1.38234 * 120.00227 * 269.98011 * 3 2 1 30 30 H 1.08999 * 109.47435 * 59.99159 * 1 2 3 31 31 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46891 * 299.99863 * 1 2 3 33 33 H 1.09003 * 109.46799 * 240.00910 * 2 1 3 34 34 H 1.08991 * 109.46935 * 120.00452 * 2 1 3 35 35 H 1.08002 * 119.99913 * 359.97438 * 4 3 2 36 36 H 1.07988 * 119.99944 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.46819 * 186.17114 * 9 7 6 38 38 H 1.08994 * 109.47195 * 306.16798 * 9 7 6 39 39 H 1.09002 * 109.47072 * 66.16960 * 9 7 6 40 40 H 1.09001 * 113.54633 * 268.99663 * 13 12 10 41 41 H 1.09002 * 113.54133 * 39.67775 * 13 12 10 42 42 H 1.09004 * 113.54036 * 320.32209 * 15 12 10 43 43 H 1.09001 * 113.54284 * 90.92772 * 15 12 10 44 44 H 1.09002 * 110.76715 * 21.22872 * 16 14 13 45 45 H 1.09002 * 110.76328 * 144.62655 * 16 14 13 46 46 H 1.09004 * 109.86153 * 98.83525 * 17 16 14 47 47 H 1.08992 * 109.86524 * 219.93637 * 17 16 14 48 48 H 0.97001 * 120.00251 * 179.97438 * 22 21 19 49 49 H 1.09006 * 110.40510 * 263.49944 * 27 18 17 50 50 H 1.09006 * 110.40415 * 141.08492 * 27 18 17 51 51 H 1.07999 * 120.00182 * 179.72203 * 28 6 5 52 52 H 1.07994 * 119.99873 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7240 3.3756 1.1973 6 6 2.9556 4.0268 0.0001 7 6 3.4579 5.4477 0.0002 8 1 3.5783 5.7904 1.0279 9 6 4.8065 5.5119 -0.7196 10 6 2.4659 6.3311 -0.7114 11 8 1.7015 5.8536 -1.5230 12 7 2.4283 7.6520 -0.4462 13 6 1.5719 8.7856 -0.8387 14 6 1.9881 9.4601 0.4593 15 6 3.2295 8.5927 0.3574 16 6 1.0861 9.2451 1.6827 17 6 0.2035 10.5148 1.6817 18 7 0.9067 11.5383 0.8923 19 6 0.4463 12.8022 0.6357 20 1 1.0393 13.4827 0.0426 21 6 -0.7823 13.2086 1.1378 22 7 -1.5050 12.3790 1.8601 23 14 -1.4106 14.9325 0.7870 24 1 -0.4177 15.6620 -0.0419 25 1 -2.7009 14.8499 0.0567 26 1 -1.6123 15.6559 2.0681 27 6 2.1905 10.9787 0.4211 28 6 2.7205 3.3769 -1.1970 29 6 2.2631 2.0724 -1.1971 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.0825 1.5634 2.1325 36 1 2.9036 3.8847 2.1326 37 1 5.2215 6.5153 -0.6248 38 1 5.4916 4.7917 -0.2726 39 1 4.6670 5.2745 -1.7743 40 1 1.9202 9.3059 -1.7309 41 1 0.5117 8.5361 -0.8810 42 1 3.5533 8.1820 1.3138 43 1 4.0428 9.0580 -0.1996 44 1 0.4760 8.3502 1.5605 45 1 1.6797 9.1879 2.5951 46 1 -0.7619 10.2943 1.2261 47 1 0.0611 10.8677 2.7030 48 1 -2.3634 12.6631 2.2113 49 1 3.0006 11.2711 1.0892 50 1 2.3983 11.3090 -0.5967 51 1 2.8972 3.8872 -2.1323 52 1 2.0830 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073059872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:50 Heat of formation + Delta-G solvation = 42.792566 kcal Electronic energy + Delta-G solvation = -29735.539932 eV Core-core repulsion = 25894.430740 eV Total energy + Delta-G solvation = -3841.109193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.82923 -39.79838 -38.23285 -35.69705 -35.13151 -32.87476 -32.13442 -30.99787 -29.59735 -28.87669 -28.45572 -26.22460 -25.78623 -24.84917 -23.78713 -22.85860 -22.69220 -20.77736 -20.30546 -19.08488 -18.31868 -17.05626 -16.66761 -16.57526 -15.81977 -15.58640 -15.42842 -15.02230 -14.68611 -14.36539 -14.19853 -13.91689 -13.79122 -13.75301 -13.47699 -13.25026 -13.21698 -12.85152 -12.56180 -12.39244 -12.16133 -11.99088 -11.96273 -11.82203 -11.77828 -11.62117 -11.34924 -11.01898 -10.94875 -10.93503 -10.91071 -10.67828 -10.43385 -10.18352 -10.07529 -9.82758 -9.70759 -9.48874 -8.92461 -8.62114 -8.61357 -8.52518 -6.85361 -5.72597 -3.06393 1.20643 1.38013 2.70707 2.91967 3.39272 3.44692 3.47290 3.69460 4.38334 4.42295 4.45256 4.61004 4.63530 4.68695 4.85070 4.91195 4.99365 5.03574 5.11009 5.12848 5.26643 5.31611 5.37304 5.40574 5.46594 5.48746 5.51125 5.51913 5.60150 5.63789 5.66318 5.74468 5.81978 5.84409 5.86548 5.93049 5.98206 6.01712 6.03122 6.18965 6.19810 6.34755 6.44796 6.50438 6.52959 6.56827 6.64730 6.67892 6.93692 7.54440 7.60496 7.81424 7.87372 8.23473 8.25351 9.20077 9.80247 10.45521 11.39049 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002166 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.470125 B =12925.283654 C =13622.697608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.124 4.124 5 C -0.108 4.108 6 C -0.078 4.078 7 C -0.064 4.064 8 H 0.097 0.903 9 C -0.135 4.135 10 C 0.545 3.455 11 O -0.538 6.538 12 N -0.643 5.643 13 C 0.127 3.873 14 C -0.105 4.105 15 C 0.113 3.887 16 C -0.117 4.117 17 C 0.179 3.821 18 N -0.605 5.605 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.153 3.847 28 C -0.074 4.074 29 C -0.123 4.123 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.252 0.748 49 H 0.026 0.974 50 H 0.042 0.958 51 H 0.124 0.876 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.748 -21.389 -1.983 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.142 4.142 5 C -0.126 4.126 6 C -0.079 4.079 7 C -0.085 4.085 8 H 0.115 0.885 9 C -0.193 4.193 10 C 0.335 3.665 11 O -0.415 6.415 12 N -0.377 5.377 13 C 0.005 3.995 14 C -0.107 4.107 15 C -0.011 4.011 16 C -0.155 4.155 17 C 0.055 3.945 18 N -0.331 5.331 19 C -0.356 4.356 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.027 3.973 28 C -0.092 4.092 29 C -0.142 4.142 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.044 0.956 50 H 0.060 0.940 51 H 0.142 0.858 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.139 -21.748 -2.422 25.024 hybrid contribution -0.447 1.039 -0.090 1.135 sum 11.692 -20.709 -2.513 23.914 Atomic orbital electron populations 1.21755 0.94711 1.01551 1.02489 1.20533 0.96238 0.92762 1.02577 1.19892 0.98945 0.96202 0.93288 1.20908 1.00947 0.94895 0.97424 1.20999 0.99434 0.94937 0.97203 1.19350 1.00933 0.93932 0.93668 1.20154 0.95182 0.91853 1.01330 0.88473 1.21713 0.94134 1.02654 1.00782 1.19953 0.84238 0.80349 0.82002 1.90698 1.42644 1.73295 1.34896 1.49846 1.33083 1.05143 1.49676 1.22790 0.96642 0.82911 0.97156 1.22192 0.95409 0.96776 0.96290 1.22860 0.95454 0.87536 0.95221 1.22464 0.97820 1.00502 0.94751 1.21218 0.92997 0.83988 0.96320 1.44545 1.16652 1.11572 1.60358 1.19087 1.01102 0.87765 1.27647 0.90332 1.24808 0.97221 0.98308 1.00144 1.69968 1.13406 1.34176 1.39321 0.86050 0.78599 0.83739 0.77397 1.20500 1.21778 1.21795 1.21141 0.90381 0.88264 0.97545 1.20993 0.96675 0.93666 0.97899 1.20992 1.00779 0.94982 0.97400 0.92452 0.92505 0.92487 0.91194 0.91200 0.86262 0.86134 0.91714 0.91204 0.91900 0.89869 0.90292 0.90498 0.89572 0.92095 0.91840 0.93543 0.93782 0.93785 0.95592 0.93991 0.85801 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.78 16 2 C -0.08 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.08 -0.85 5.13 -104.62 -0.54 -1.39 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 5 C -0.11 -1.17 9.67 -39.58 -0.38 -1.56 16 6 C -0.08 -0.94 4.63 -104.62 -0.48 -1.43 16 7 C -0.06 -0.72 2.72 -92.92 -0.25 -0.97 16 8 H 0.10 0.96 7.88 -51.93 -0.41 0.55 16 9 C -0.14 -1.22 8.91 37.16 0.33 -0.88 16 10 C 0.55 8.15 7.18 -10.99 -0.08 8.07 16 11 O -0.54 -9.97 15.31 5.55 0.09 -9.88 16 12 N -0.64 -9.23 3.70 -185.67 -0.69 -9.91 16 13 C 0.13 2.04 7.98 -7.32 -0.06 1.98 16 14 C -0.10 -1.67 1.06 -155.22 -0.16 -1.83 16 15 C 0.11 1.36 7.83 -7.47 -0.06 1.30 16 16 C -0.12 -2.09 6.40 -25.61 -0.16 -2.25 16 17 C 0.18 4.22 5.39 -2.83 -0.02 4.21 16 18 N -0.60 -14.78 3.41 -170.53 -0.58 -15.36 16 19 C -0.23 -6.17 10.28 -15.06 -0.15 -6.33 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -26.80 10.30 55.49 0.57 -26.23 16 23 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.15 2.88 6.70 -3.22 -0.02 2.86 16 28 C -0.07 -0.92 7.94 -39.58 -0.31 -1.24 16 29 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.10 7.95 -52.49 -0.42 0.68 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.60 7.63 -51.93 -0.40 0.21 16 40 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.07 8.07 -51.93 -0.42 0.66 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 47 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 51 H 0.12 1.60 7.00 -52.49 -0.37 1.23 16 52 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 415.57 15.07 6.26 6.26 Total: -1.00 -32.33 415.57 -11.47 -43.80 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -9.07 Total: -0.73 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.02 Total: -4.80 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.70 Total: -51.50 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.33 -11.47 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073059872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.588 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds