Wall clock time and date at job start Wed Apr 1 2020 02:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47326 * 2 1 4 4 C 1.38239 * 119.99864 * 89.99721 * 3 2 1 5 5 C 1.38235 * 119.99669 * 179.97438 * 4 3 2 6 6 C 1.38242 * 120.00401 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99936 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47151 * 90.00652 * 7 6 5 9 9 C 1.50699 * 109.46902 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00146 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99701 * 179.97438 * 9 8 7 12 12 C 1.47853 * 134.36072 * 180.02562 * 11 9 8 13 13 C 1.52553 * 85.66560 * 156.40881 * 12 11 9 14 14 C 1.47844 * 134.36800 * 0.05774 * 11 9 8 15 15 C 1.53855 * 115.94160 * 140.70114 * 13 12 11 16 16 C 1.55157 * 101.40978 * 163.66434 * 15 13 12 17 17 N 1.47549 * 105.00403 * 324.35060 * 16 15 13 18 18 C 1.36940 * 125.65391 * 203.90644 * 17 16 15 19 19 H 1.08001 * 119.99535 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00356 * 0.02562 * 18 17 16 21 21 N 1.31614 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99685 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47061 * 90.00164 * 22 20 18 24 24 H 1.48499 * 109.47027 * 209.99637 * 22 20 18 25 25 H 1.48498 * 109.47212 * 330.00164 * 22 20 18 26 26 C 1.47354 * 108.68084 * 23.92541 * 17 16 15 27 27 C 1.38241 * 119.99435 * 0.25825 * 6 5 4 28 28 C 1.38234 * 119.99924 * 270.02164 * 3 2 1 29 29 H 1.09000 * 109.47509 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47501 * 300.00591 * 1 2 3 31 31 H 1.09008 * 109.46902 * 60.00046 * 1 2 3 32 32 H 1.08997 * 109.47169 * 239.99828 * 2 1 3 33 33 H 1.08999 * 109.46786 * 119.99931 * 2 1 3 34 34 H 1.07996 * 120.00170 * 0.02562 * 4 3 2 35 35 H 1.08006 * 120.00186 * 180.02562 * 5 4 3 36 36 H 1.08997 * 109.47247 * 329.99908 * 7 6 5 37 37 H 1.09008 * 109.46734 * 210.00089 * 7 6 5 38 38 H 1.08997 * 109.47652 * 59.99505 * 8 7 6 39 39 H 1.09008 * 109.46842 * 299.99371 * 8 7 6 40 40 H 1.08997 * 113.84559 * 42.22078 * 12 11 9 41 41 H 1.09006 * 113.95431 * 270.60749 * 12 11 9 42 42 H 1.09001 * 113.84457 * 89.40266 * 14 11 9 43 43 H 1.09002 * 113.83937 * 317.77390 * 14 11 9 44 44 H 1.09001 * 111.03528 * 45.63184 * 15 13 12 45 45 H 1.09000 * 111.04046 * 281.69400 * 15 13 12 46 46 H 1.08998 * 110.33591 * 83.23420 * 16 15 13 47 47 H 1.09004 * 110.33316 * 205.47085 * 16 15 13 48 48 H 0.96997 * 120.00055 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.98213 * 238.60839 * 26 17 16 50 50 H 1.09000 * 110.01845 * 117.33152 * 26 17 16 51 51 H 1.07999 * 119.99619 * 179.72760 * 27 6 5 52 52 H 1.07997 * 119.99831 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3755 1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4569 5.4480 0.0000 8 6 4.9869 5.4479 0.0000 9 6 5.4892 6.8688 -0.0006 10 8 4.7011 7.7906 -0.0014 11 7 6.8143 7.1150 -0.0002 12 6 7.6376 8.3431 -0.0001 13 6 8.7311 7.4712 0.6091 14 6 8.0238 6.2647 -0.0004 15 6 10.1612 7.7367 0.1074 16 6 11.0059 7.0273 1.1985 17 7 10.2665 7.2462 2.4565 18 6 10.8072 7.2238 3.7144 19 1 10.1785 7.3963 4.5755 20 6 12.1632 6.9794 3.8829 21 7 12.9292 6.7687 2.8336 22 14 12.9004 6.9482 5.5990 23 1 12.8376 5.5666 6.1397 24 1 14.3163 7.3918 5.5376 25 1 12.1335 7.8614 6.4839 26 6 8.8498 7.4924 2.1345 27 6 2.7186 3.3775 -1.1972 28 6 2.2623 2.0726 -1.1972 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.0831 1.5632 2.1325 35 1 2.9044 3.8846 2.1325 36 1 3.0936 5.9618 0.8900 37 1 3.0936 5.9618 -0.8900 38 1 5.3503 4.9341 -0.8900 39 1 5.3502 4.9341 0.8900 40 1 7.2694 9.1203 0.6697 41 1 7.8755 8.7165 -0.9962 42 1 8.3785 6.0033 -0.9974 43 1 7.9595 5.4071 0.6693 44 1 10.3744 8.8053 0.0808 45 1 10.3236 7.2825 -0.8700 46 1 11.0824 5.9612 0.9847 47 1 11.9981 7.4744 1.2597 48 1 13.8768 6.5983 2.9513 49 1 8.5443 8.4657 2.5184 50 1 8.2272 6.7094 2.5675 51 1 2.8944 3.8880 -2.1325 52 1 2.0824 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073423303.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:16 Heat of formation + Delta-G solvation = 33.816681 kcal Electronic energy + Delta-G solvation = -28885.842566 eV Core-core repulsion = 25044.344149 eV Total energy + Delta-G solvation = -3841.498416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.57390 -39.78559 -38.35950 -35.65191 -35.28876 -32.72492 -32.20616 -31.12911 -29.98067 -29.11932 -28.09309 -26.26255 -25.97189 -24.83973 -23.53078 -22.94338 -22.46552 -20.62001 -20.36818 -19.14296 -18.24283 -17.14775 -16.78177 -16.18719 -16.10021 -15.86835 -15.47868 -15.24335 -14.83677 -14.43457 -14.26840 -14.01853 -13.91139 -13.74790 -13.54062 -13.36468 -13.09305 -12.90355 -12.62220 -12.45829 -12.14199 -12.03502 -11.93854 -11.69197 -11.64757 -11.55781 -11.31639 -11.22102 -11.02189 -10.98876 -10.95682 -10.83142 -10.44582 -10.11035 -10.06089 -9.92713 -9.71789 -9.40359 -9.11958 -8.70231 -8.68048 -8.53659 -6.87365 -5.68585 -3.10059 1.10419 1.20587 2.73294 2.91359 3.38339 3.43736 3.45437 3.53155 4.31600 4.45009 4.49846 4.52478 4.65073 4.77670 4.80409 4.87869 4.95201 4.99307 5.01509 5.06848 5.19146 5.20767 5.28852 5.31066 5.42468 5.46793 5.50757 5.54477 5.60308 5.61073 5.67226 5.68991 5.76883 5.77405 5.81057 5.86431 5.91811 5.95048 6.04679 6.14941 6.22479 6.26299 6.39710 6.46738 6.49191 6.54381 6.67998 6.72675 6.81095 7.45989 7.59500 7.81646 7.83686 8.25026 8.32298 9.18896 9.79202 10.43786 11.35411 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012884 B = 0.002039 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.645871 B =13727.314858 C =15054.029958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.084 4.084 7 C -0.064 4.064 8 C -0.128 4.128 9 C 0.533 3.467 10 O -0.551 6.551 11 N -0.641 5.641 12 C 0.121 3.879 13 C -0.102 4.102 14 C 0.118 3.882 15 C -0.132 4.132 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.163 3.837 27 C -0.113 4.113 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.013 0.987 47 H 0.107 0.893 48 H 0.252 0.748 49 H 0.029 0.971 50 H 0.023 0.977 51 H 0.121 0.879 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.837 -9.833 -10.274 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.084 4.084 7 C -0.102 4.102 8 C -0.168 4.168 9 C 0.323 3.677 10 O -0.430 6.430 11 N -0.376 5.376 12 C -0.001 4.001 13 C -0.104 4.104 14 C -0.005 4.005 15 C -0.171 4.171 16 C 0.029 3.971 17 N -0.330 5.330 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.038 3.962 27 C -0.131 4.131 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.031 0.969 47 H 0.124 0.876 48 H 0.063 0.937 49 H 0.047 0.953 50 H 0.041 0.959 51 H 0.139 0.861 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.275 -9.417 -10.151 24.552 hybrid contribution 0.450 -0.175 0.823 0.955 sum -19.825 -9.593 -9.328 23.917 Atomic orbital electron populations 1.21748 0.94781 1.01635 1.02223 1.20540 0.96135 0.92768 1.02826 1.19890 0.99496 0.96233 0.93270 1.21020 0.99958 0.94875 0.97512 1.21098 0.99305 0.94799 0.97777 1.19914 0.99202 0.96066 0.93229 1.20329 0.93288 0.92128 1.04417 1.21580 0.96482 0.94083 1.04673 1.20337 0.80403 0.91386 0.75559 1.90680 1.54303 1.46838 1.51186 1.50257 1.03726 1.10950 1.72694 1.23059 0.86936 0.89526 1.00601 1.22432 0.95192 0.94677 0.98064 1.23164 0.80881 0.95728 1.00689 1.22846 0.93342 1.01440 0.99484 1.21973 0.97156 0.96233 0.81763 1.44609 1.01705 1.83740 1.02991 1.19069 0.91859 1.41162 0.82928 0.90523 1.24776 0.96190 1.02091 0.97580 1.69786 1.05079 1.55326 1.26892 0.86074 0.78433 0.77682 0.83325 1.21645 1.21639 1.20702 1.20800 0.88216 0.98028 0.89201 1.21052 0.99666 0.94778 0.97631 1.20993 1.00193 0.94856 0.97448 0.92450 0.92552 0.92601 0.91110 0.91060 0.86195 0.85931 0.90161 0.90302 0.89048 0.88792 0.90108 0.89800 0.89580 0.89749 0.91413 0.91901 0.96889 0.87573 0.93721 0.95330 0.95904 0.86095 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.09 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.09 -0.77 5.13 -104.62 -0.54 -1.30 16 4 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 5 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 6 C -0.08 -0.85 5.13 -104.62 -0.54 -1.38 16 7 C -0.06 -0.69 4.63 -27.89 -0.13 -0.82 16 8 C -0.13 -1.44 5.43 -27.88 -0.15 -1.59 16 9 C 0.53 7.88 8.06 -10.99 -0.09 7.79 16 10 O -0.55 -9.96 16.71 5.56 0.09 -9.86 16 11 N -0.64 -9.25 3.62 -185.66 -0.67 -9.92 16 12 C 0.12 1.75 8.17 -3.53 -0.03 1.72 16 13 C -0.10 -1.64 0.97 -154.72 -0.15 -1.80 16 14 C 0.12 1.60 7.87 -3.53 -0.03 1.57 16 15 C -0.13 -2.25 6.45 -25.14 -0.16 -2.41 16 16 C 0.15 3.50 5.90 -2.33 -0.01 3.49 16 17 N -0.60 -14.92 3.41 -170.35 -0.58 -15.50 16 18 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -26.18 10.09 55.49 0.56 -25.62 16 22 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.16 3.31 6.74 -3.57 -0.02 3.28 16 27 C -0.11 -1.05 9.70 -39.58 -0.38 -1.44 16 28 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 37 H 0.08 0.87 8.04 -51.92 -0.42 0.45 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.08 1.22 8.02 -51.93 -0.42 0.81 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.09 0.99 8.02 -51.93 -0.42 0.58 16 43 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.11 2.77 5.89 -51.93 -0.31 2.46 16 48 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.03 0.59 8.00 -51.93 -0.42 0.18 16 50 H 0.02 0.47 7.87 -51.93 -0.41 0.06 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 52 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 419.27 15.07 6.32 6.32 Total: -1.00 -31.62 419.27 -11.83 -43.46 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -9.09 Total: -0.55 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.44 Total: -5.05 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.69 Total: -51.05 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -31.62 -11.83 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073423303.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.272 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds