Wall clock time and date at job start Wed Apr 1 2020 01:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 119.99589 * 2 1 4 4 C 1.38238 * 119.99763 * 180.02562 * 3 2 1 5 5 C 1.38238 * 119.99849 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99645 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47479 * 90.00007 * 6 5 4 8 8 H 1.08997 * 109.47012 * 54.99497 * 7 6 5 9 9 C 1.53005 * 109.46765 * 294.99836 * 7 6 5 10 10 C 1.50702 * 109.47335 * 174.99895 * 7 6 5 11 11 O 1.21279 * 120.00107 * 34.58246 * 10 7 6 12 12 N 1.34776 * 119.99852 * 214.58634 * 10 7 6 13 13 C 1.47893 * 134.33978 * 174.89429 * 12 10 7 14 14 C 1.52374 * 85.58880 * 156.55581 * 13 12 10 15 15 C 1.47885 * 134.34462 * 354.95297 * 12 10 7 16 16 C 1.53650 * 116.39083 * 141.35895 * 14 13 12 17 17 C 1.54604 * 102.73307 * 95.48551 * 16 14 13 18 18 N 1.47141 * 107.36059 * 20.75444 * 17 16 14 19 19 C 1.36940 * 125.58423 * 180.66417 * 18 17 16 20 20 H 1.07997 * 120.00305 * 180.02562 * 19 18 17 21 21 C 1.38818 * 119.99900 * 0.02728 * 19 18 17 22 22 N 1.31622 * 119.99815 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47104 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47293 * 119.99710 * 23 21 19 26 26 H 1.48496 * 109.47197 * 240.00137 * 23 21 19 27 27 C 1.47717 * 108.82857 * 0.93000 * 18 17 16 28 28 C 1.38239 * 120.00151 * 0.25042 * 5 4 3 29 29 C 1.38233 * 119.99826 * 359.47561 * 28 5 4 30 30 H 1.08993 * 109.47243 * 90.00058 * 1 2 3 31 31 H 1.09004 * 109.46834 * 209.99931 * 1 2 3 32 32 H 1.09003 * 109.46864 * 329.99352 * 1 2 3 33 33 H 1.07998 * 120.00577 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.00193 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.47144 * 329.99228 * 6 5 4 36 36 H 1.09007 * 109.47175 * 209.99910 * 6 5 4 37 37 H 1.08997 * 109.47145 * 65.93027 * 9 7 6 38 38 H 1.08999 * 109.47014 * 185.93102 * 9 7 6 39 39 H 1.09002 * 109.46569 * 305.92740 * 9 7 6 40 40 H 1.08999 * 113.85379 * 42.39171 * 13 12 10 41 41 H 1.08998 * 113.85074 * 270.72411 * 13 12 10 42 42 H 1.08995 * 113.85351 * 89.27804 * 15 12 10 43 43 H 1.09004 * 113.85259 * 317.60885 * 15 12 10 44 44 H 1.09001 * 110.75419 * 337.17580 * 16 14 13 45 45 H 1.09004 * 110.91895 * 213.87330 * 16 14 13 46 46 H 1.09000 * 109.86643 * 261.31407 * 17 16 14 47 47 H 1.08999 * 109.97991 * 140.26374 * 17 16 14 48 48 H 0.97007 * 119.99445 * 180.02562 * 22 21 19 49 49 H 1.09003 * 110.40245 * 96.33189 * 27 18 17 50 50 H 1.08999 * 110.40025 * 218.74658 * 27 18 17 51 51 H 1.07993 * 119.99608 * 179.73157 * 28 5 4 52 52 H 1.07998 * 119.99817 * 180.27661 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0002 -0.0028 7 6 6.2899 -0.0004 1.4393 8 1 5.8557 -0.8425 1.9783 9 6 5.8856 1.3067 2.1242 10 6 7.7918 -0.1242 1.4398 11 8 8.4434 0.3951 0.5586 12 7 8.4109 -0.8121 2.4196 13 6 9.8123 -1.2079 2.6781 14 6 9.3948 -1.2924 4.1411 15 6 7.9592 -1.4724 3.6634 16 6 9.9935 -2.4490 4.9565 17 6 11.2161 -1.7900 5.6356 18 7 10.9892 -0.3362 5.6329 19 6 11.8485 0.6054 6.1331 20 1 11.5900 1.6528 6.0842 21 6 13.0521 0.2135 6.7032 22 7 13.3675 -1.0630 6.7624 23 14 14.2240 1.4978 7.3862 24 1 13.6402 2.8504 7.1984 25 1 14.4420 1.2490 8.8339 26 1 15.5216 1.4153 6.6689 27 6 9.6797 -0.0592 5.0079 28 6 3.5805 -1.1971 -0.0074 29 6 2.1982 -1.1972 -0.0011 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 1.6581 2.1325 -0.0004 34 1 4.1205 2.1326 -0.0010 35 1 6.1416 0.8904 -0.5166 36 1 6.1417 -0.8896 -0.5173 37 1 4.8004 1.3471 2.2181 38 1 6.3380 1.3528 3.1148 39 1 6.2305 2.1512 1.5275 40 1 10.5378 -0.4211 2.4715 41 1 10.0867 -2.1683 2.2418 42 1 7.6668 -2.5137 3.5285 43 1 7.2301 -0.8932 4.2302 44 1 10.3070 -3.2617 4.3013 45 1 9.2840 -2.8076 5.7022 46 1 12.1217 -2.0246 5.0763 47 1 11.3107 -2.1482 6.6607 48 1 14.2084 -1.3368 7.1611 49 1 8.9105 0.0543 5.7718 50 1 9.7361 0.8358 4.3883 51 1 4.1206 -2.1323 -0.0126 52 1 1.6583 -2.1325 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073461871.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:18 Heat of formation + Delta-G solvation = 36.467917 kcal Electronic energy + Delta-G solvation = -29561.702519 eV Core-core repulsion = 25720.319069 eV Total energy + Delta-G solvation = -3841.383450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.65473 -39.81881 -38.44569 -35.64396 -35.30893 -32.53463 -32.10862 -31.18418 -29.68816 -28.70245 -28.18953 -26.36949 -25.87056 -25.57257 -23.80253 -22.99112 -22.36904 -20.77350 -20.27401 -18.94756 -18.22414 -17.25309 -16.74726 -16.04554 -15.90601 -15.79445 -15.39225 -15.22153 -14.76505 -14.43098 -14.25338 -14.10322 -13.81338 -13.68603 -13.57612 -13.26516 -12.88238 -12.77860 -12.61825 -12.42964 -12.31487 -12.16170 -12.07170 -11.87107 -11.74691 -11.38548 -11.28634 -11.19864 -11.08880 -11.01250 -10.92834 -10.76181 -10.40391 -10.17715 -10.05749 -9.86245 -9.67837 -9.39181 -9.15263 -8.70994 -8.60519 -8.49434 -6.84393 -5.72046 -3.05301 1.06091 1.15906 2.74970 2.93480 3.40105 3.46104 3.48204 3.49344 4.28480 4.46831 4.51296 4.58369 4.68130 4.69723 4.76998 4.81887 4.88427 4.98766 5.05821 5.17392 5.22640 5.24459 5.27143 5.38251 5.46397 5.47923 5.52022 5.53380 5.56954 5.63096 5.65979 5.69277 5.72153 5.80562 5.84570 5.93805 6.00047 6.04859 6.07798 6.17443 6.17818 6.22490 6.33421 6.42804 6.46660 6.51014 6.66587 6.71182 6.76914 7.55416 7.59987 7.82132 7.88011 8.24585 8.29412 9.21557 9.81199 10.46427 11.39672 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.002009 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.721384 B =13936.774364 C =14174.394799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.109 4.109 5 C -0.081 4.081 6 C -0.064 4.064 7 C -0.096 4.096 8 H 0.087 0.913 9 C -0.141 4.141 10 C 0.537 3.463 11 O -0.546 6.546 12 N -0.640 5.640 13 C 0.128 3.872 14 C -0.103 4.103 15 C 0.114 3.886 16 C -0.132 4.132 17 C 0.178 3.822 18 N -0.604 5.604 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.162 3.838 28 C -0.113 4.113 29 C -0.119 4.119 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.251 0.749 49 H 0.024 0.976 50 H 0.040 0.960 51 H 0.121 0.879 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.423 -2.334 -12.222 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.127 4.127 5 C -0.081 4.081 6 C -0.102 4.102 7 C -0.117 4.117 8 H 0.106 0.894 9 C -0.199 4.199 10 C 0.327 3.673 11 O -0.424 6.424 12 N -0.375 5.375 13 C 0.007 3.993 14 C -0.105 4.105 15 C -0.010 4.010 16 C -0.170 4.170 17 C 0.053 3.947 18 N -0.331 5.331 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.036 3.964 28 C -0.131 4.131 29 C -0.137 4.137 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.041 0.959 50 H 0.058 0.942 51 H 0.139 0.861 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.952 -1.921 -12.748 27.201 hybrid contribution 0.675 0.472 0.448 0.937 sum -23.277 -1.449 -12.300 26.367 Atomic orbital electron populations 1.20785 0.91366 1.02718 1.02202 1.19919 0.95997 0.93290 1.00169 1.21027 0.94173 0.97481 1.01113 1.21096 0.94033 0.97758 0.99788 1.19842 0.95335 0.93228 0.99688 1.20456 0.90394 1.04217 0.95093 1.21166 0.91829 1.00900 0.97817 0.89449 1.21774 1.01913 0.95534 1.00660 1.20267 0.89521 0.77777 0.79779 1.90687 1.67435 1.47499 1.36763 1.50276 1.11060 1.53178 1.22976 1.22952 0.83673 1.00202 0.92522 1.22456 0.93595 0.99794 0.94636 1.23090 0.97835 0.97432 0.82598 1.22670 0.99861 0.96015 0.98503 1.21210 0.92279 0.82617 0.98546 1.44557 1.16279 1.02670 1.69592 1.19093 0.97070 0.87948 1.31338 0.90445 1.24793 0.98009 0.96347 1.01319 1.69971 1.23772 1.13199 1.50017 0.86047 0.80953 0.80415 0.78374 1.20519 1.21774 1.21764 1.21036 0.89285 0.93275 0.92831 1.21059 0.94121 0.97646 1.00235 1.21006 0.94133 0.97474 1.01120 0.91316 0.91622 0.91612 0.86194 0.85907 0.89702 0.90796 0.91310 0.91997 0.91806 0.89624 0.89971 0.89671 0.90038 0.91791 0.91729 0.93535 0.93753 0.93824 0.95866 0.94204 0.86107 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.09 -0.74 5.88 -104.62 -0.62 -1.36 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 4 C -0.11 -0.96 8.12 -39.58 -0.32 -1.29 16 5 C -0.08 -0.76 4.72 -104.62 -0.49 -1.26 16 6 C -0.06 -0.67 4.41 -27.88 -0.12 -0.79 16 7 C -0.10 -1.07 2.56 -91.77 -0.24 -1.30 16 8 H 0.09 0.87 7.77 -51.93 -0.40 0.46 16 9 C -0.14 -1.47 8.55 37.16 0.32 -1.15 16 10 C 0.54 8.12 7.05 -10.98 -0.08 8.04 16 11 O -0.55 -10.35 17.09 5.56 0.10 -10.26 16 12 N -0.64 -9.38 3.62 -186.90 -0.68 -10.06 16 13 C 0.13 2.07 8.15 -3.60 -0.03 2.04 16 14 C -0.10 -1.65 0.99 -154.85 -0.15 -1.80 16 15 C 0.11 1.40 7.72 -3.60 -0.03 1.37 16 16 C -0.13 -2.21 6.36 -25.55 -0.16 -2.37 16 17 C 0.18 4.13 5.40 -2.85 -0.02 4.11 16 18 N -0.60 -15.05 3.41 -170.50 -0.58 -15.63 16 19 C -0.23 -6.27 10.28 -15.06 -0.15 -6.42 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.78 10.30 55.49 0.57 -26.20 16 23 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 C 0.16 3.24 6.63 -3.17 -0.02 3.22 16 28 C -0.11 -0.99 9.70 -39.58 -0.38 -1.37 16 29 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.98 8.04 -52.48 -0.42 0.56 16 35 H 0.08 0.97 7.96 -51.93 -0.41 0.55 16 36 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.07 0.62 6.67 -51.93 -0.35 0.28 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.61 8.12 -51.93 -0.42 1.19 16 41 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 44 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.05 1.20 7.40 -51.93 -0.38 0.82 16 47 H 0.04 1.14 7.47 -51.93 -0.39 0.76 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.04 0.83 8.07 -51.93 -0.42 0.42 16 51 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 52 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 415.79 15.07 6.27 6.27 Total: -1.00 -32.58 415.79 -11.41 -43.99 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -9.06 Total: -1.58 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.00 Total: -3.67 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.69 Total: -51.89 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.10 Total: -10.26 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.58 -11.41 -43.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073461871.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.454 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds