Wall clock time and date at job start Wed Apr 1 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38256 * 119.99980 * 2 1 4 4 C 1.38210 * 119.99984 * 179.72035 * 3 2 1 5 5 C 1.38253 * 120.00117 * 0.27443 * 4 3 2 6 6 C 1.38221 * 119.99961 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99956 * 180.18403 * 2 1 3 8 8 C 1.50695 * 120.00358 * 0.04865 * 7 2 1 9 9 C 1.53008 * 109.47018 * 275.07090 * 8 7 2 10 10 H 1.08989 * 109.47490 * 54.17170 * 9 8 7 11 11 C 1.53008 * 109.46726 * 294.17555 * 9 8 7 12 12 C 1.50698 * 109.47074 * 174.17873 * 9 8 7 13 13 O 1.21278 * 120.00509 * 359.97438 * 12 9 8 14 14 N 1.34778 * 119.99835 * 179.97438 * 12 9 8 15 15 C 1.47389 * 135.85368 * 359.63598 * 14 12 9 16 16 C 1.52069 * 87.41125 * 154.38365 * 15 14 12 17 17 C 1.47398 * 135.85206 * 179.97438 * 14 12 9 18 18 C 1.53516 * 117.21217 * 267.27552 * 16 15 14 19 19 C 1.54635 * 102.70328 * 262.93274 * 18 16 15 20 20 N 1.47147 * 107.37719 * 339.38150 * 19 18 16 21 21 C 1.36934 * 125.58215 * 179.04267 * 20 19 18 22 22 H 1.07997 * 120.00164 * 186.10490 * 21 20 19 23 23 C 1.38819 * 119.99669 * 6.10370 * 21 20 19 24 24 N 1.31617 * 120.00236 * 6.79376 * 23 21 20 25 25 Si 1.86796 * 119.99714 * 186.79868 * 23 21 20 26 26 H 1.48498 * 109.47327 * 94.99186 * 25 23 21 27 27 H 1.48505 * 109.46948 * 214.98905 * 25 23 21 28 28 H 1.48502 * 109.47365 * 334.98789 * 25 23 21 29 29 C 1.47761 * 108.83713 * 359.09018 * 20 19 18 30 30 H 1.09007 * 109.47063 * 95.77833 * 1 2 3 31 31 H 1.09004 * 109.47400 * 215.77234 * 1 2 3 32 32 H 1.08997 * 109.47373 * 335.78127 * 1 2 3 33 33 H 1.08002 * 119.99497 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.99775 * 180.25694 * 4 3 2 35 35 H 1.07994 * 120.00078 * 179.97438 * 5 4 3 36 36 H 1.07990 * 119.99956 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47513 * 35.06317 * 8 7 2 38 38 H 1.08997 * 109.47469 * 155.06882 * 8 7 2 39 39 H 1.09001 * 109.46723 * 175.92208 * 11 9 8 40 40 H 1.09007 * 109.46853 * 295.91672 * 11 9 8 41 41 H 1.08993 * 109.47369 * 55.91506 * 11 9 8 42 42 H 1.09003 * 113.54148 * 268.99019 * 15 14 12 43 43 H 1.09000 * 113.54528 * 39.66502 * 15 14 12 44 44 H 1.08996 * 113.54168 * 320.32702 * 17 14 12 45 45 H 1.08996 * 113.53967 * 90.93817 * 17 14 12 46 46 H 1.09007 * 110.75859 * 21.23298 * 18 16 15 47 47 H 1.08992 * 110.76560 * 144.62540 * 18 16 15 48 48 H 1.08994 * 109.86315 * 98.83202 * 19 18 16 49 49 H 1.08998 * 109.86227 * 219.93219 * 19 18 16 50 50 H 0.96992 * 119.99964 * 180.02562 * 24 23 21 51 51 H 1.09000 * 110.40420 * 263.50049 * 29 20 19 52 52 H 1.09006 * 110.39894 * 141.08116 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0001 0.0060 6 6 3.5806 -1.1970 0.0008 7 6 2.1981 -1.1970 -0.0038 8 6 1.4446 -2.5020 -0.0091 9 6 1.0782 -2.8852 1.4261 10 1 0.5405 -2.0618 1.8960 11 6 2.3546 -3.1783 2.2174 12 6 0.2037 -4.1124 1.4107 13 8 -0.0972 -4.6295 0.3558 14 7 -0.2439 -4.6355 2.5694 15 6 -0.0989 -4.3144 4.0006 16 6 -1.4297 -5.0161 4.2221 17 6 -1.0866 -5.7810 2.9570 18 6 -2.6952 -4.1477 4.1896 19 6 -2.9572 -3.8723 5.6885 20 7 -2.2511 -4.9103 6.4561 21 6 -2.2185 -5.0080 7.8215 22 1 -1.5912 -5.7486 8.2951 23 6 -2.9917 -4.1549 8.5970 24 7 -3.8549 -3.3442 8.0226 25 14 -2.8069 -4.1573 10.4558 26 1 -1.8572 -3.0898 10.8603 27 1 -4.1288 -3.9082 11.0850 28 1 -2.2879 -5.4759 10.9000 29 6 -1.5819 -5.8294 5.5122 30 1 -0.3633 -0.1035 -1.0225 31 1 -0.3634 -0.8338 0.6008 32 1 -0.3634 0.9372 0.4216 33 1 1.6582 2.1326 -0.0004 34 1 4.1203 2.1327 0.0100 35 1 5.3516 0.0001 0.0101 36 1 4.1206 -2.1322 0.0004 37 1 0.5350 -2.3941 -0.5998 38 1 2.0703 -3.2811 -0.4447 39 1 2.0988 -3.3805 3.2575 40 1 2.8550 -4.0477 1.7907 41 1 3.0191 -2.3159 2.1676 42 1 0.7430 -4.8173 4.4765 43 1 -0.1279 -3.2455 4.2121 44 1 -1.9402 -5.9365 2.2973 45 1 -0.5216 -6.6951 3.1393 46 1 -2.5117 -3.2174 3.6521 47 1 -3.5274 -4.6940 3.7458 48 1 -2.5737 -2.8880 5.9568 49 1 -4.0266 -3.9235 5.8931 50 1 -4.3949 -2.7479 8.5644 51 1 -2.2003 -6.7095 5.3359 52 1 -0.6040 -6.1214 5.8950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073473901.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:25 Heat of formation + Delta-G solvation = 40.938520 kcal Electronic energy + Delta-G solvation = -30149.231181 eV Core-core repulsion = 26308.041591 eV Total energy + Delta-G solvation = -3841.189590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.83013 -39.91562 -38.44896 -35.69722 -35.08438 -32.93182 -32.25079 -31.16797 -29.44703 -28.67168 -27.46453 -26.67387 -25.97975 -25.87112 -24.01076 -22.84433 -22.12564 -20.58988 -20.31989 -19.00412 -18.35741 -17.11824 -16.72608 -16.31612 -16.03769 -15.94445 -15.42443 -15.08142 -14.84699 -14.43849 -14.31120 -13.94748 -13.82371 -13.41298 -13.38492 -13.21460 -12.97633 -12.69028 -12.49071 -12.40177 -12.30493 -12.20949 -12.10738 -11.92547 -11.85846 -11.43326 -11.23995 -11.12319 -11.01030 -10.97223 -10.88840 -10.70892 -10.43209 -10.16336 -10.10171 -9.88755 -9.70142 -9.48765 -8.97746 -8.73922 -8.64618 -8.54260 -6.85941 -5.73645 -3.09292 1.14420 1.19208 2.69717 2.92726 3.37906 3.43345 3.45415 3.55511 4.29358 4.45301 4.58807 4.62135 4.70283 4.73026 4.77331 4.85479 4.89553 4.96877 5.11599 5.19304 5.25349 5.26027 5.45294 5.45787 5.46243 5.50337 5.56835 5.61149 5.63932 5.66216 5.67924 5.69282 5.78009 5.81146 5.84431 5.92966 5.95199 6.04147 6.09358 6.15728 6.20752 6.30771 6.31316 6.42969 6.48630 6.50271 6.63804 6.69030 6.82724 7.45420 7.62417 7.78856 7.85805 8.22093 8.23680 9.17661 9.78422 10.44178 11.36593 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.002484 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.099211 B =11270.820138 C =12134.236215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 C -0.119 4.119 4 C -0.122 4.122 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.078 4.078 8 C -0.062 4.062 9 C -0.098 4.098 10 H 0.097 0.903 11 C -0.146 4.146 12 C 0.545 3.455 13 O -0.550 6.550 14 N -0.641 5.641 15 C 0.121 3.879 16 C -0.106 4.106 17 C 0.118 3.882 18 C -0.115 4.115 19 C 0.175 3.825 20 N -0.603 5.603 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.153 3.847 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.031 0.969 49 H 0.060 0.940 50 H 0.252 0.748 51 H 0.027 0.973 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 5.501 -16.165 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.099 4.099 9 C -0.120 4.120 10 H 0.115 0.885 11 C -0.204 4.204 12 C 0.335 3.665 13 O -0.428 6.428 14 N -0.375 5.375 15 C -0.002 4.002 16 C -0.107 4.107 17 C -0.005 4.005 18 C -0.153 4.153 19 C 0.051 3.949 20 N -0.330 5.330 21 C -0.357 4.357 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.026 3.974 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.049 0.951 49 H 0.078 0.922 50 H 0.062 0.938 51 H 0.044 0.956 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.173 5.423 -16.742 21.983 hybrid contribution 0.176 0.144 1.090 1.114 sum 13.350 5.567 -15.652 21.312 Atomic orbital electron populations 1.20891 0.91176 1.03075 1.02589 1.19825 0.96114 0.92597 0.99422 1.21043 0.94283 0.97429 1.00988 1.21110 0.94320 0.98010 1.00582 1.21107 0.99744 0.92557 1.01040 1.21062 0.93549 0.98121 1.00193 1.19736 0.93641 0.94417 1.00043 1.20406 1.00713 0.93670 0.95149 1.21192 0.96817 0.96128 0.97819 0.88467 1.21854 0.96055 1.02421 1.00038 1.20139 0.79407 0.85199 0.81797 1.90678 1.59008 1.63236 1.29915 1.49829 1.51065 1.30778 1.05838 1.22891 0.97520 1.01642 0.78140 1.22186 0.95475 0.97687 0.95375 1.22759 0.93620 0.90155 0.93931 1.22442 0.94469 0.97933 1.00500 1.21264 0.97998 0.91633 0.84038 1.44541 1.58889 1.28179 1.01357 1.19046 1.20975 1.15821 0.79856 0.90427 1.24806 0.98129 0.99409 0.98059 1.69951 1.26151 1.27004 1.33565 0.86118 0.76969 0.77620 0.85165 1.21672 1.21785 1.20616 1.21142 0.96311 0.92456 0.87485 0.91011 0.91082 0.91469 0.86166 0.86301 0.86269 0.86092 0.89872 0.90431 0.91723 0.92305 0.91131 0.89567 0.90207 0.90517 0.89885 0.92210 0.91704 0.95063 0.92224 0.93758 0.95583 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.06 36.01 0.33 -0.77 16 2 C -0.08 -0.79 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.09 9.68 -39.58 -0.38 -1.48 16 4 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 5 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 6 C -0.11 -1.03 8.25 -39.58 -0.33 -1.36 16 7 C -0.08 -0.79 4.59 -104.63 -0.48 -1.28 16 8 C -0.06 -0.67 3.50 -27.88 -0.10 -0.77 16 9 C -0.10 -1.12 2.35 -91.76 -0.22 -1.34 16 10 H 0.10 1.10 6.91 -51.94 -0.36 0.74 16 11 C -0.15 -1.47 8.80 37.16 0.33 -1.14 16 12 C 0.54 7.91 7.40 -10.99 -0.08 7.82 16 13 O -0.55 -9.71 16.67 5.56 0.09 -9.62 16 14 N -0.64 -9.02 3.65 -185.72 -0.68 -9.70 16 15 C 0.12 1.67 6.12 -7.33 -0.04 1.62 16 16 C -0.11 -1.66 1.06 -155.23 -0.16 -1.83 16 17 C 0.12 1.65 8.02 -7.47 -0.06 1.59 16 18 C -0.12 -2.03 6.40 -25.60 -0.16 -2.20 16 19 C 0.18 4.03 5.44 -2.83 -0.02 4.01 16 20 N -0.60 -14.48 3.41 -170.53 -0.58 -15.06 16 21 C -0.23 -6.10 10.26 -15.06 -0.15 -6.25 16 22 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 23 C -0.01 -0.21 5.45 -17.43 -0.10 -0.30 16 24 N -0.92 -26.28 10.45 55.49 0.58 -25.70 16 25 Si 0.91 21.52 29.56 -169.99 -5.02 16.50 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 C 0.15 2.86 6.70 -3.22 -0.02 2.84 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.07 0.70 5.73 -51.93 -0.30 0.40 16 32 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.08 0.98 6.88 -51.93 -0.36 0.62 16 38 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 39 H 0.06 0.66 6.44 -51.93 -0.33 0.32 16 40 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.07 0.66 6.28 -51.93 -0.33 0.33 16 42 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 49 H 0.06 1.56 7.01 -51.93 -0.36 1.19 16 50 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 52 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 LS Contribution 406.81 15.07 6.13 6.13 Total: -1.00 -31.22 406.81 -11.27 -42.50 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.73 Total: 0.11 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -3.06 Total: -5.15 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.68 Total: -50.46 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.22 -11.27 -42.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073473901.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.435 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds