Wall clock time and date at job start Wed Apr 1 2020 02:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.46715 * 2 1 4 4 C 1.38378 * 119.85114 * 265.22844 * 3 2 1 5 5 C 1.37938 * 120.14327 * 180.27837 * 4 3 2 6 6 C 1.39596 * 119.85330 * 359.74636 * 5 4 3 7 7 C 1.47843 * 120.14484 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99869 * 186.66342 * 7 6 5 9 9 N 1.34776 * 119.99834 * 6.65610 * 7 6 5 10 10 C 1.47387 * 135.85431 * 5.16053 * 9 7 6 11 11 C 1.52081 * 87.41075 * 154.38031 * 10 9 7 12 12 C 1.47397 * 135.85104 * 185.51801 * 9 7 6 13 13 C 1.53512 * 117.21567 * 267.27863 * 11 10 9 14 14 C 1.54628 * 102.69946 * 262.93284 * 13 11 10 15 15 N 1.47145 * 107.38296 * 339.38216 * 14 13 11 16 16 C 1.36936 * 125.58598 * 179.07206 * 15 14 13 17 17 H 1.07997 * 120.00202 * 186.05930 * 16 15 14 18 18 C 1.38814 * 119.99742 * 6.05269 * 16 15 14 19 19 N 1.31624 * 120.00041 * 353.13906 * 18 16 15 20 20 Si 1.86806 * 119.99985 * 173.13649 * 18 16 15 21 21 H 1.48498 * 109.47064 * 94.98816 * 20 18 16 22 22 H 1.48494 * 109.47064 * 214.99107 * 20 18 16 23 23 H 1.48498 * 109.46699 * 334.98985 * 20 18 16 24 24 C 1.47762 * 108.83668 * 359.09138 * 15 14 13 25 25 C 1.39553 * 119.70983 * 359.97438 * 6 5 4 26 26 C 1.37985 * 119.85563 * 0.02562 * 25 6 5 27 27 C 1.50693 * 119.92938 * 179.97438 * 26 25 6 28 28 C 1.53001 * 109.46963 * 265.00121 * 27 26 25 29 29 H 1.08998 * 109.47159 * 60.00706 * 1 2 3 30 30 H 1.09004 * 109.47030 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47605 * 300.00029 * 1 2 3 32 32 H 1.08995 * 109.47605 * 239.99971 * 2 1 3 33 33 H 1.08998 * 109.47159 * 119.99294 * 2 1 3 34 34 H 1.08003 * 119.92847 * 0.02839 * 4 3 2 35 35 H 1.08002 * 120.07448 * 179.76705 * 5 4 3 36 36 H 1.09001 * 113.54353 * 268.99078 * 10 9 7 37 37 H 1.09000 * 113.54495 * 39.67479 * 10 9 7 38 38 H 1.08992 * 113.54680 * 320.33424 * 12 9 7 39 39 H 1.09004 * 113.54194 * 90.94132 * 12 9 7 40 40 H 1.08996 * 110.76458 * 21.23398 * 13 11 10 41 41 H 1.08991 * 110.76357 * 144.63104 * 13 11 10 42 42 H 1.09002 * 109.87017 * 98.83301 * 14 13 11 43 43 H 1.09005 * 109.86040 * 219.93436 * 14 13 11 44 44 H 0.97001 * 119.99803 * 179.97438 * 19 18 16 45 45 H 1.09001 * 110.40413 * 263.50626 * 24 15 14 46 46 H 1.08999 * 110.40854 * 141.07776 * 24 15 14 47 47 H 1.08000 * 120.07239 * 179.97438 * 25 6 5 48 48 H 1.08992 * 109.47305 * 145.00096 * 27 26 25 49 49 H 1.09001 * 109.47225 * 24.99613 * 27 26 25 50 50 H 1.09008 * 109.46892 * 179.97438 * 28 27 26 51 51 H 1.09002 * 109.47362 * 299.99371 * 28 27 26 52 52 H 1.08995 * 109.47618 * 59.99755 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3560 2.0370 -1.1960 5 6 2.8216 3.3354 -1.2026 6 6 2.9611 4.0297 0.0005 7 6 3.4602 5.4213 0.0010 8 8 3.6957 5.9821 1.0534 9 7 3.6541 6.0681 -1.1654 10 6 3.4058 5.7788 -2.5891 11 6 3.3407 7.2818 -2.8121 12 6 4.2126 7.3699 -1.5728 13 6 1.9572 7.9430 -2.7394 14 6 1.5429 8.0288 -4.2266 15 7 2.7712 7.9351 -5.0313 16 6 2.8311 7.9533 -6.3992 17 1 3.7717 7.7805 -6.9009 18 6 1.6827 8.1938 -7.1410 19 7 0.5145 8.2700 -6.5393 20 14 1.7952 8.4094 -8.9932 21 1 1.5272 7.1099 -9.6599 22 1 0.7915 9.4098 -9.4369 23 1 3.1565 8.8799 -9.3549 24 6 3.9297 7.8176 -4.1216 25 6 2.6274 3.4044 1.2026 26 6 2.1626 2.1052 1.1952 27 6 1.8023 1.4281 2.4923 28 6 2.9968 0.6121 2.9907 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.2476 1.4988 -2.1261 35 1 3.0775 3.8139 -2.1364 36 1 4.2478 5.3005 -3.0895 37 1 2.4599 5.2687 -2.7713 38 1 3.9404 8.1882 -0.9063 39 1 5.2808 7.3375 -1.7873 40 1 1.2600 7.3199 -2.1793 41 1 2.0271 8.9379 -2.2997 42 1 0.8748 7.2036 -4.4733 43 1 1.0461 8.9799 -4.4184 44 1 -0.2879 8.4385 -7.0577 45 1 4.3873 8.7938 -3.9610 46 1 4.6601 7.1162 -4.5249 47 1 2.7334 3.9359 2.1367 48 1 0.9514 0.7661 2.3325 49 1 1.5418 2.1818 3.2355 50 1 2.7363 0.1227 3.9292 51 1 3.2573 -0.1417 2.2476 52 1 3.8478 1.2741 3.1505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073499037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:20 Heat of formation + Delta-G solvation = 46.842518 kcal Electronic energy + Delta-G solvation = -30018.208525 eV Core-core repulsion = 26177.274951 eV Total energy + Delta-G solvation = -3840.933573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.93438 -39.84515 -38.09776 -35.70668 -34.87425 -33.67051 -32.24334 -30.28268 -29.98395 -29.15572 -28.46987 -26.18786 -25.94500 -24.79601 -23.95374 -23.30221 -21.75898 -21.35907 -20.31530 -19.24088 -18.51957 -16.98897 -16.82600 -16.57349 -15.92810 -15.54841 -15.42810 -14.97506 -14.62104 -14.27186 -14.17454 -13.93750 -13.89254 -13.73186 -13.65512 -13.38722 -13.10995 -12.75869 -12.63907 -12.43787 -12.26966 -12.09231 -11.93237 -11.84554 -11.73837 -11.56813 -11.36071 -11.09697 -10.98257 -10.94228 -10.83409 -10.62491 -10.44760 -10.22421 -10.12885 -9.87038 -9.68859 -9.57101 -8.98967 -8.79891 -8.60314 -8.51532 -6.86314 -5.75471 -3.08140 0.76609 1.23795 2.82214 2.89670 3.37763 3.43957 3.45755 3.75410 4.33365 4.43390 4.45364 4.53328 4.63439 4.69701 4.75620 4.93217 4.98581 5.03244 5.04986 5.12890 5.21116 5.27568 5.33126 5.36489 5.42191 5.45705 5.53730 5.58997 5.60832 5.62560 5.65029 5.70915 5.76795 5.79218 5.82653 5.86995 5.88045 5.95588 6.05421 6.14456 6.21781 6.23176 6.31272 6.43327 6.44918 6.50978 6.64009 6.68688 6.78242 7.51973 7.60168 7.79174 7.81649 8.21400 8.23135 9.18125 9.78515 10.44570 11.36469 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.002567 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.149580 B =10905.721264 C =12212.938968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.057 4.057 4 C -0.124 4.124 5 C -0.094 4.094 6 C -0.129 4.129 7 C 0.585 3.415 8 O -0.548 6.548 9 N -0.638 5.638 10 C 0.113 3.887 11 C -0.105 4.105 12 C 0.120 3.880 13 C -0.117 4.117 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.154 3.846 25 C -0.057 4.057 26 C -0.092 4.092 27 C -0.087 4.087 28 C -0.148 4.148 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.252 0.748 45 H 0.028 0.972 46 H 0.042 0.958 47 H 0.133 0.867 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.056 0.944 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -15.772 15.403 22.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.058 4.058 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.132 4.132 7 C 0.376 3.624 8 O -0.427 6.427 9 N -0.371 5.371 10 C -0.009 4.009 11 C -0.106 4.106 12 C -0.003 4.003 13 C -0.155 4.155 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.027 3.973 25 C -0.076 4.076 26 C -0.093 4.093 27 C -0.124 4.124 28 C -0.205 4.205 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.060 0.940 47 H 0.151 0.849 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.076 0.924 51 H 0.075 0.925 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.135 -15.544 15.984 22.515 hybrid contribution 0.022 0.165 -1.145 1.157 sum 3.157 -15.379 14.838 21.602 Atomic orbital electron populations 1.21769 0.94462 1.01808 1.02548 1.20661 0.96437 0.92577 1.03130 1.19947 0.97140 0.96071 0.92613 1.21014 1.00431 0.94988 0.97714 1.21870 0.96712 0.94600 0.98046 1.19851 1.04849 0.94007 0.94449 1.17800 0.77602 0.85112 0.81873 1.90742 1.53491 1.68184 1.30281 1.49654 1.61348 1.20428 1.05712 1.23050 1.01839 0.97573 0.78457 1.22206 0.98040 0.94789 0.95596 1.22789 0.98220 0.85371 0.93873 1.22464 0.93323 0.99126 1.00611 1.21233 0.88603 1.01090 0.83630 1.44537 1.00400 1.86740 1.01428 1.19030 0.94961 1.41875 0.79891 0.90397 1.24819 0.95444 1.01918 0.98104 1.69976 0.97350 1.55375 1.33947 0.86146 0.77175 0.77542 0.85179 1.21711 1.21663 1.20628 1.21140 0.91281 0.97354 0.87547 1.21100 0.95258 0.93694 0.97570 1.19652 1.00782 0.93919 0.94898 1.20586 0.98771 0.99331 0.93703 1.21777 0.98022 0.99977 1.00771 0.92253 0.92293 0.92370 0.90882 0.90498 0.85429 0.84333 0.89284 0.89593 0.90299 0.89631 0.92097 0.91707 0.93879 0.93490 0.93736 0.95444 0.93967 0.84948 0.90529 0.90923 0.92354 0.92463 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.72 37.16 0.36 -0.69 16 2 C -0.09 -0.68 5.38 -27.88 -0.15 -0.83 16 3 C -0.06 -0.57 5.14 -104.53 -0.54 -1.11 16 4 C -0.12 -1.33 9.66 -39.64 -0.38 -1.72 16 5 C -0.09 -1.17 9.15 -39.18 -0.36 -1.53 16 6 C -0.13 -1.82 5.87 -104.97 -0.62 -2.43 16 7 C 0.58 9.61 8.01 -12.33 -0.10 9.51 16 8 O -0.55 -10.55 17.14 5.32 0.09 -10.45 16 9 N -0.64 -9.66 3.68 -186.82 -0.69 -10.35 16 10 C 0.11 1.62 5.43 -7.32 -0.04 1.58 16 11 C -0.10 -1.68 1.06 -155.21 -0.16 -1.85 16 12 C 0.12 1.72 8.03 -7.47 -0.06 1.66 16 13 C -0.12 -2.12 6.41 -25.61 -0.16 -2.28 16 14 C 0.18 4.16 5.40 -2.83 -0.02 4.14 16 15 N -0.60 -14.54 3.41 -170.53 -0.58 -15.13 16 16 C -0.23 -6.12 10.26 -15.06 -0.15 -6.27 16 17 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 18 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 19 N -0.92 -26.32 10.35 55.49 0.57 -25.75 16 20 Si 0.91 21.52 29.56 -169.99 -5.02 16.50 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.15 2.88 6.70 -3.21 -0.02 2.86 16 25 C -0.06 -0.73 9.22 -39.18 -0.36 -1.09 16 26 C -0.09 -0.97 5.13 -104.68 -0.54 -1.51 16 27 C -0.09 -0.69 5.37 -27.89 -0.15 -0.84 16 28 C -0.15 -1.05 9.72 37.16 0.36 -0.69 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 6.78 -51.93 -0.35 0.06 16 32 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 33 H 0.08 0.50 5.57 -51.93 -0.29 0.21 16 34 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.14 1.67 4.17 -52.49 -0.22 1.45 16 36 H 0.09 1.13 8.04 -51.93 -0.42 0.72 16 37 H 0.09 1.26 6.83 -51.93 -0.35 0.90 16 38 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.04 1.11 7.55 -51.93 -0.39 0.71 16 43 H 0.05 1.23 7.36 -51.93 -0.38 0.85 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 47 H 0.13 1.70 7.67 -52.49 -0.40 1.30 16 48 H 0.08 0.53 5.60 -51.93 -0.29 0.24 16 49 H 0.07 0.56 8.05 -51.93 -0.42 0.15 16 50 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 51 H 0.06 0.39 6.76 -51.93 -0.35 0.04 16 52 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -31.58 404.43 -11.19 -42.77 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.47 Total: -0.33 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.18 Total: -3.36 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.69 Total: -51.22 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.58 -11.19 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073499037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.613 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds