Wall clock time and date at job start Wed Apr 1 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46932 * 2 1 4 4 C 1.38253 * 120.00140 * 264.97612 * 3 2 1 5 5 C 1.38212 * 119.99710 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.00422 * 0.02562 * 5 4 3 7 7 C 1.38209 * 119.99739 * 359.76504 * 6 5 4 8 8 C 1.38215 * 119.99797 * 85.00189 * 3 2 1 9 9 C 1.50705 * 120.00053 * 359.97438 * 8 3 2 10 10 H 1.08998 * 115.54782 * 334.33441 * 9 8 3 11 11 C 1.53069 * 117.49427 * 188.60405 * 9 8 3 12 12 C 1.53000 * 117.49547 * 120.00066 * 9 8 3 13 13 H 1.08993 * 117.50112 * 359.97438 * 12 9 8 14 14 C 1.50699 * 117.49579 * 214.97771 * 12 9 8 15 15 O 1.21281 * 120.00369 * 0.08963 * 14 12 9 16 16 N 1.34780 * 119.99985 * 180.08746 * 14 12 9 17 17 C 1.47423 * 125.64581 * 359.96151 * 16 14 12 18 18 C 1.54906 * 104.83266 * 204.16120 * 17 16 14 19 19 C 1.55156 * 101.58151 * 322.99284 * 18 17 16 20 20 H 1.09003 * 110.87316 * 277.06741 * 19 18 17 21 21 N 1.46506 * 110.72234 * 153.86495 * 19 18 17 22 22 C 1.36939 * 120.00073 * 91.20038 * 21 19 18 23 23 H 1.08004 * 119.99859 * 0.02562 * 22 21 19 24 24 C 1.38805 * 119.99849 * 180.02562 * 22 21 19 25 25 N 1.31625 * 120.00056 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00155 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46896 * 90.00225 * 26 24 22 28 28 H 1.48501 * 109.47275 * 210.00265 * 26 24 22 29 29 H 1.48499 * 109.47039 * 330.00065 * 26 24 22 30 30 C 1.47018 * 125.65002 * 180.02562 * 16 14 12 31 31 H 1.08999 * 110.01469 * 298.39695 * 30 16 14 32 32 C 1.53003 * 109.88141 * 59.49259 * 30 16 14 33 33 H 1.09001 * 109.47076 * 299.99433 * 1 2 3 34 34 H 1.08998 * 109.47104 * 59.99802 * 1 2 3 35 35 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 36 36 H 1.09006 * 109.47264 * 240.00119 * 2 1 3 37 37 H 1.08998 * 109.47104 * 120.00198 * 2 1 3 38 38 H 1.07996 * 119.99884 * 0.02562 * 4 3 2 39 39 H 1.08000 * 119.99804 * 180.02562 * 5 4 3 40 40 H 1.08001 * 119.99949 * 179.97438 * 6 5 4 41 41 H 1.08002 * 119.99948 * 180.25208 * 7 6 5 42 42 H 1.08995 * 117.51492 * 145.04018 * 11 9 8 43 43 H 1.08998 * 117.49378 * 359.97438 * 11 9 8 44 44 H 1.08998 * 110.37029 * 323.00038 * 17 16 14 45 45 H 1.08999 * 110.36534 * 85.32618 * 17 16 14 46 46 H 1.08999 * 111.00838 * 204.91916 * 18 17 16 47 47 H 1.08999 * 111.00489 * 81.06873 * 18 17 16 48 48 H 0.97005 * 119.99811 * 271.47831 * 21 19 18 49 49 H 0.97000 * 119.99835 * 179.97438 * 25 24 22 50 50 H 1.09005 * 109.47017 * 177.81209 * 32 30 16 51 51 H 1.09008 * 109.47051 * 297.80304 * 32 30 16 52 52 H 1.08998 * 109.47299 * 57.80594 * 32 30 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0377 -1.1927 5 6 2.8217 3.3409 -1.1926 6 6 2.9533 4.0276 0.0001 7 6 2.6200 3.4124 1.1920 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4347 2.4926 10 1 1.0738 0.6301 2.4193 11 6 1.7790 2.3025 3.7532 12 6 2.9091 1.2928 3.5426 13 1 3.8948 1.6853 3.2930 14 6 2.9010 0.0514 4.3970 15 8 2.0418 -0.7894 4.2370 16 7 3.8489 -0.1245 5.3389 17 6 4.9473 0.8122 5.6380 18 6 6.0499 -0.0630 6.2843 19 6 5.2056 -1.0608 7.1202 20 1 4.9264 -0.6249 8.0794 21 7 5.9323 -2.3178 7.3161 22 6 6.7297 -2.4832 8.4170 23 1 6.8226 -1.6872 9.1410 24 6 7.4187 -3.6739 8.6023 25 7 8.1856 -3.8328 9.6602 26 14 7.2575 -5.0509 7.3503 27 1 8.3034 -4.8966 6.3074 28 1 7.4257 -6.3603 8.0302 29 1 5.9152 -4.9903 6.7180 30 6 3.9594 -1.2829 6.2375 31 1 3.0701 -1.3556 6.8635 32 6 4.1241 -2.5639 5.4171 33 1 -0.3633 0.5137 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8934 -0.5138 -0.8900 37 1 1.8934 -0.5139 0.8899 38 1 2.2584 1.5014 -2.1244 39 1 3.0786 3.8229 -2.1244 40 1 3.3133 5.0459 0.0001 41 1 2.7189 3.9502 2.1234 42 1 1.0299 2.0690 4.5097 43 1 2.0216 3.3593 3.6418 44 1 5.3159 1.2701 4.7201 45 1 4.6126 1.5784 6.3373 46 1 6.6970 0.5347 6.9263 47 1 6.6309 -0.5844 5.5235 48 1 5.8518 -3.0313 6.6639 49 1 8.6667 -4.6650 9.7898 50 1 4.2443 -3.4132 6.0898 51 1 3.2405 -2.7141 4.7967 52 1 5.0046 -2.4770 4.7806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074838113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:39 Heat of formation + Delta-G solvation = 14.417516 kcal Electronic energy + Delta-G solvation = -29986.154096 eV Core-core repulsion = 26143.814469 eV Total energy + Delta-G solvation = -3842.339627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.08 seconds Orbital eigenvalues (eV) -41.64795 -40.67606 -39.17831 -37.18177 -36.04953 -35.09245 -33.67130 -32.19155 -31.61041 -30.96729 -30.20482 -26.95822 -26.20262 -24.99889 -24.70882 -24.50404 -23.32861 -21.97077 -21.25014 -20.73799 -19.97500 -19.81833 -18.49504 -17.45437 -17.14345 -16.99881 -16.44287 -16.26974 -16.03562 -15.78330 -15.41603 -15.02064 -14.84414 -14.74379 -14.67754 -14.40698 -14.10191 -14.07757 -13.82595 -13.59370 -13.37664 -13.18474 -13.13340 -13.05482 -12.83565 -12.73392 -12.68563 -12.61165 -12.30352 -12.25439 -11.95012 -11.84976 -11.78331 -11.73509 -11.55821 -11.46154 -11.34413 -10.99080 -10.82702 -9.70148 -9.65183 -9.37840 -9.33464 -8.03507 -5.36910 0.38968 0.51644 1.35715 1.36608 1.43604 1.47543 1.87624 2.45629 2.67703 3.08008 3.25112 3.37908 3.53842 3.62342 3.71948 3.82532 3.85894 3.91428 3.94722 4.08262 4.12012 4.14021 4.26909 4.32013 4.33142 4.34866 4.46662 4.47465 4.57648 4.63303 4.64537 4.69702 4.75451 4.76106 4.80290 4.93921 4.96956 5.00310 5.07448 5.11202 5.12647 5.18318 5.22801 5.26038 5.29421 5.35315 5.44517 5.64300 5.66338 5.76874 5.79904 6.15049 6.20524 6.54421 7.05097 7.13092 7.80675 7.98812 9.17502 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.002387 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.933983 B =11729.185107 C =12147.065608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.086 4.086 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.127 4.127 7 C -0.121 4.121 8 C -0.064 4.064 9 C -0.089 4.089 10 H 0.108 0.892 11 C -0.124 4.124 12 C -0.174 4.174 13 H 0.141 0.859 14 C 0.552 3.448 15 O -0.581 6.581 16 N -0.605 5.605 17 C 0.107 3.893 18 C -0.147 4.147 19 C 0.170 3.830 20 H 0.072 0.928 21 N -0.746 5.746 22 C -0.225 4.225 23 H 0.067 0.933 24 C -0.058 4.058 25 N -0.979 5.979 26 Si 0.939 3.061 27 H -0.278 1.278 28 H -0.296 1.296 29 H -0.256 1.256 30 C 0.132 3.868 31 H 0.068 0.932 32 C -0.155 4.155 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.369 0.631 49 H 0.257 0.743 50 H 0.059 0.941 51 H 0.060 0.940 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 19.346 -22.901 33.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.086 4.086 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.145 4.145 7 C -0.138 4.138 8 C -0.064 4.064 9 C -0.107 4.107 10 H 0.126 0.874 11 C -0.161 4.161 12 C -0.195 4.195 13 H 0.159 0.841 14 C 0.342 3.658 15 O -0.461 6.461 16 N -0.338 5.338 17 C -0.015 4.015 18 C -0.187 4.187 19 C 0.061 3.939 20 H 0.090 0.910 21 N -0.391 5.391 22 C -0.356 4.356 23 H 0.085 0.915 24 C -0.250 4.250 25 N -0.630 5.630 26 Si 0.767 3.233 27 H -0.205 1.205 28 H -0.223 1.223 29 H -0.181 1.181 30 C 0.027 3.973 31 H 0.086 0.914 32 C -0.214 4.214 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.117 0.883 43 H 0.155 0.845 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.205 0.795 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.079 0.921 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.285 18.938 -22.821 32.917 hybrid contribution 0.387 -1.645 -0.105 1.693 sum -13.898 17.293 -22.926 31.903 Atomic orbital electron populations 1.21700 0.94148 1.02025 1.02002 1.20552 0.96779 0.92731 1.02523 1.19873 0.99298 0.96323 0.93091 1.21243 0.99934 0.95830 0.97500 1.21452 0.99156 0.94539 0.99215 1.21423 0.99940 1.00971 0.92183 1.21289 0.99053 0.93922 0.99575 1.19025 1.00594 0.94477 0.92290 1.21034 0.99779 1.01844 0.88064 0.87431 1.23261 0.97497 0.97336 0.98034 1.22272 0.98281 0.96849 1.02067 0.84114 1.19835 0.79517 0.87366 0.79047 1.90655 1.38904 1.46467 1.70094 1.48522 1.28736 1.21661 1.34839 1.22514 0.85442 0.91874 1.01694 1.23361 0.97633 0.98060 0.99695 1.21355 0.89596 0.86683 0.96313 0.91043 1.42964 1.54814 1.15297 1.25984 1.19047 1.17682 0.99621 0.99285 0.91539 1.25359 0.99846 1.00310 0.99472 1.69853 1.35354 1.27088 1.30700 0.85668 0.78794 0.79534 0.79309 1.20453 1.22261 1.18080 1.21609 0.98593 0.86171 0.90939 0.91424 1.21979 1.01723 0.97566 1.00104 0.93207 0.91843 0.92104 0.90417 0.92448 0.84952 0.84167 0.83868 0.84000 0.88254 0.84525 0.88276 0.88878 0.89458 0.91861 0.79494 0.93369 0.92199 0.92092 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.74 71.98 0.70 -1.63 16 2 C -0.09 -1.62 5.38 29.85 0.16 -1.46 16 3 C -0.09 -1.56 5.13 -19.87 -0.10 -1.66 16 4 C -0.13 -1.94 9.68 22.27 0.22 -1.72 16 5 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 6 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 7 C -0.12 -1.67 9.30 22.27 0.21 -1.47 16 8 C -0.06 -1.13 5.61 -19.86 -0.11 -1.24 16 9 C -0.09 -1.71 4.66 -11.51 -0.05 -1.76 16 10 H 0.11 2.55 5.47 -2.39 -0.01 2.54 16 11 C -0.12 -1.86 9.57 30.62 0.29 -1.57 16 12 C -0.17 -3.38 5.17 -11.54 -0.06 -3.44 16 13 H 0.14 2.23 7.07 -2.39 -0.02 2.21 16 14 C 0.55 15.35 7.41 87.66 0.65 16.00 16 15 O -0.58 -20.46 15.16 -3.03 -0.05 -20.51 16 16 N -0.60 -16.46 3.08 -788.08 -2.43 -18.89 16 17 C 0.11 2.25 6.69 86.85 0.58 2.84 16 18 C -0.15 -4.21 6.77 31.98 0.22 -3.99 16 19 C 0.17 6.05 3.49 46.18 0.16 6.21 16 20 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 21 N -0.75 -33.55 4.74 -317.32 -1.50 -35.06 16 22 C -0.23 -12.35 10.44 84.03 0.88 -11.47 16 23 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 24 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 25 N -0.98 -61.76 13.97 21.65 0.30 -61.45 16 26 Si 0.94 45.29 27.73 68.60 1.90 47.20 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 H -0.26 -11.35 6.45 99.48 0.64 -10.71 16 30 C 0.13 4.32 3.48 45.34 0.16 4.48 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 C -0.16 -5.44 7.93 71.98 0.57 -4.87 16 33 H 0.05 0.89 7.17 -2.39 -0.02 0.87 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.24 8.05 -2.38 -0.02 1.22 16 37 H 0.06 1.29 6.94 -2.39 -0.02 1.28 16 38 H 0.13 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.14 1.33 6.02 -2.91 -0.02 1.31 16 42 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.14 1.23 6.17 -2.39 -0.01 1.22 16 44 H 0.10 1.59 7.00 -2.39 -0.02 1.57 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.37 16.38 2.92 -92.70 -0.27 16.11 16 49 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.06 2.24 6.70 -2.38 -0.02 2.22 16 51 H 0.06 2.17 6.77 -2.38 -0.02 2.16 16 52 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 Total: -1.00 -71.01 405.34 4.19 -66.82 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.58 Total: 34.28 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 5.38 Total: -12.39 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -3.63 Total: -115.39 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.05 Total: -20.51 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.20 kcal Total: -71.01 4.19 -66.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074838113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.239 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.08 seconds