Wall clock time and date at job start Wed Apr 1 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47012 * 119.99915 * 2 1 3 5 5 C 1.38257 * 120.00169 * 299.97538 * 4 2 1 6 6 C 1.38214 * 119.99920 * 179.97438 * 5 4 2 7 7 C 1.38254 * 119.99995 * 359.79539 * 6 5 4 8 8 C 1.38214 * 120.00234 * 0.48482 * 7 6 5 9 9 C 1.50697 * 120.00242 * 179.76732 * 8 7 6 10 10 C 1.50699 * 109.46890 * 269.72528 * 9 8 7 11 11 O 1.21283 * 120.00363 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00089 * 180.02562 * 10 9 8 13 13 C 1.47403 * 125.58713 * 0.02562 * 12 10 9 14 14 C 1.53763 * 105.10792 * 203.83384 * 13 12 10 15 15 C 1.55170 * 102.23245 * 323.64736 * 14 13 12 16 16 H 1.09003 * 113.89834 * 157.57570 * 15 14 13 17 17 C 1.53752 * 108.31339 * 284.47990 * 15 14 13 18 18 N 1.46588 * 108.10698 * 124.37822 * 17 15 14 19 19 C 1.36943 * 125.30989 * 181.24797 * 18 17 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27725 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99836 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47169 * 300.00118 * 23 21 19 27 27 C 1.46708 * 109.37833 * 1.51395 * 18 17 15 28 28 C 1.46708 * 125.59211 * 179.97438 * 12 10 9 29 29 H 1.09003 * 111.53168 * 56.11823 * 28 12 10 30 30 C 1.38214 * 119.99797 * 120.00275 * 4 2 1 31 31 H 1.08995 * 109.46738 * 60.00197 * 1 2 3 32 32 H 1.09003 * 109.46630 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46910 * 299.99677 * 1 2 3 34 34 H 1.09006 * 109.47346 * 240.00203 * 2 1 3 35 35 H 1.09000 * 109.47437 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47227 * 300.00316 * 3 2 1 37 37 H 1.09004 * 109.47184 * 60.00337 * 3 2 1 38 38 H 1.07995 * 119.99669 * 0.02562 * 5 4 2 39 39 H 1.08003 * 119.99977 * 180.02562 * 6 5 4 40 40 H 1.07999 * 119.99907 * 180.24742 * 7 6 5 41 41 H 1.09000 * 109.47054 * 149.72685 * 9 8 7 42 42 H 1.08993 * 109.46999 * 29.72358 * 9 8 7 43 43 H 1.09001 * 110.37162 * 323.21602 * 13 12 10 44 44 H 1.09004 * 110.37482 * 85.43539 * 13 12 10 45 45 H 1.09007 * 111.50963 * 205.01677 * 14 13 12 46 46 H 1.08997 * 109.96102 * 81.58602 * 14 13 12 47 47 H 1.09002 * 109.74632 * 4.70482 * 17 15 14 48 48 H 1.08999 * 109.74403 * 244.04996 * 17 15 14 49 49 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.98651 * 101.17710 * 27 18 17 51 51 H 1.08999 * 109.98695 * 222.48852 * 27 18 17 52 52 H 1.08003 * 120.00006 * 359.97438 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6988 -0.2378 2.4862 6 6 2.1590 -0.8896 3.6147 7 6 2.9495 -2.0168 3.4878 8 6 3.2878 -2.4859 2.2325 9 6 4.1538 -3.7115 2.0943 10 6 5.6027 -3.3000 2.0479 11 8 5.9027 -2.1271 2.1196 12 7 6.5653 -4.2355 1.9258 13 6 6.3414 -5.6890 1.8274 14 6 7.6524 -6.3302 2.3115 15 6 8.7211 -5.3488 1.7614 16 1 9.6714 -5.3870 2.2940 17 6 8.8641 -5.5882 0.2494 18 7 8.6328 -4.3139 -0.4374 19 6 8.6511 -4.1315 -1.7945 20 1 8.8485 -4.9676 -2.4491 21 6 8.4222 -2.8708 -2.3284 22 7 8.1822 -1.8519 -1.5307 23 14 8.4549 -2.6204 -4.1793 24 1 7.4162 -3.4722 -4.8124 25 1 8.1822 -1.1943 -4.4908 26 1 9.7916 -2.9959 -4.7061 27 6 8.3849 -3.2634 0.5562 28 6 8.0077 -3.9738 1.8680 29 1 8.3474 -3.4110 2.7374 30 6 2.8270 -1.8341 1.1036 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.0779 0.6403 2.5852 39 1 1.8981 -0.5207 4.5956 40 1 3.3058 -2.5285 4.3696 41 1 3.8957 -4.2369 1.1748 42 1 3.9902 -4.3700 2.9472 43 1 5.5083 -5.9885 2.4634 44 1 6.1496 -5.9743 0.7929 45 1 7.7873 -7.3281 1.8940 46 1 7.6726 -6.3587 3.4009 47 1 8.1280 -6.3222 -0.0785 48 1 9.8682 -5.9494 0.0271 49 1 8.0219 -0.9710 -1.9038 50 1 9.2850 -2.6655 0.6987 51 1 7.5626 -2.6273 0.2285 52 1 3.0876 -2.2033 0.1227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075988987.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:32 Heat of formation + Delta-G solvation = 10.824216 kcal Electronic energy + Delta-G solvation = -30845.524979 eV Core-core repulsion = 27003.029534 eV Total energy + Delta-G solvation = -3842.495444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.22039 -39.45136 -37.67053 -35.44279 -34.70784 -32.47121 -31.94127 -30.80323 -29.95808 -28.96313 -27.36072 -27.14914 -26.10131 -24.63240 -23.14682 -22.58844 -21.93743 -20.75191 -19.74601 -19.20619 -18.26412 -17.02598 -16.57831 -16.48726 -15.82903 -15.58364 -15.12629 -14.74667 -14.29415 -14.27132 -13.79459 -13.70267 -13.65037 -13.50920 -13.20640 -12.93621 -12.76915 -12.59272 -12.36970 -12.09504 -11.99770 -11.97670 -11.80215 -11.62272 -11.46883 -11.18354 -11.13202 -11.07573 -10.98769 -10.71001 -10.59715 -10.55359 -10.48159 -10.25958 -10.12570 -9.76476 -9.62946 -9.28089 -8.60929 -8.55941 -8.41519 -8.01425 -6.75964 -5.58849 -3.00481 1.50099 1.59110 3.18976 3.42304 3.46405 3.47810 3.49007 3.97387 4.51876 4.65988 4.76419 4.78313 4.87611 4.92608 5.09404 5.14885 5.19513 5.25150 5.30876 5.32406 5.47679 5.52570 5.54950 5.57379 5.59174 5.63855 5.66928 5.70357 5.79129 5.80671 5.82948 5.87905 5.91768 5.99535 6.06279 6.11385 6.23772 6.26583 6.28620 6.28828 6.39023 6.56087 6.60905 6.63947 6.70835 6.74195 6.81788 6.91967 7.18034 7.53539 7.69602 7.99758 8.11303 8.45231 8.76694 9.28193 9.89841 10.52666 11.45294 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.003949 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.409563 B = 7087.949136 C = 9391.899231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.074 4.074 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.055 4.055 9 C -0.098 4.098 10 C 0.529 3.471 11 O -0.522 6.522 12 N -0.600 5.600 13 C 0.103 3.897 14 C -0.123 4.123 15 C -0.110 4.110 16 H 0.095 0.905 17 C 0.143 3.857 18 N -0.599 5.599 19 C -0.232 4.232 20 H 0.076 0.924 21 C -0.006 4.006 22 N -0.913 5.913 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.156 3.844 28 C 0.115 3.885 29 H 0.075 0.925 30 C -0.097 4.097 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.024 0.976 48 H 0.019 0.981 49 H 0.253 0.747 50 H 0.020 0.980 51 H 0.106 0.894 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.306 -3.960 10.571 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.074 4.074 5 C -0.137 4.137 6 C -0.138 4.138 7 C -0.130 4.130 8 C -0.056 4.056 9 C -0.138 4.138 10 C 0.317 3.683 11 O -0.397 6.397 12 N -0.335 5.335 13 C -0.021 4.021 14 C -0.161 4.161 15 C -0.129 4.129 16 H 0.113 0.887 17 C 0.016 3.984 18 N -0.326 5.326 19 C -0.360 4.360 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.560 5.560 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.030 3.970 28 C 0.011 3.989 29 H 0.093 0.907 30 C -0.115 4.115 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.037 0.963 49 H 0.064 0.936 50 H 0.038 0.962 51 H 0.124 0.876 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.241 -3.064 10.457 17.148 hybrid contribution 0.265 0.031 -1.008 1.042 sum -12.975 -3.034 9.449 16.336 Atomic orbital electron populations 1.21842 0.94589 1.01789 1.01628 1.20130 0.95582 0.96267 0.95709 1.21849 1.01919 0.94909 1.01451 1.19762 0.97670 0.95385 0.94589 1.20866 1.00919 0.99871 0.92041 1.20988 0.98663 0.95922 0.98226 1.20892 0.98540 0.97047 0.96490 1.19262 0.96616 0.96236 0.93439 1.20654 0.91800 0.96814 1.04510 1.19917 0.86216 0.85210 0.76983 1.90750 1.82936 1.17089 1.48973 1.48258 1.06550 1.06235 1.72470 1.22055 0.97781 0.80934 1.01283 1.22580 0.94358 0.98784 1.00415 1.23052 0.97758 0.94282 0.97850 0.88673 1.21163 0.97605 0.90539 0.89045 1.44179 1.83353 1.02884 1.02143 1.18946 1.42287 0.94268 0.80540 0.90644 1.24813 1.01950 0.95694 0.97784 1.69902 1.53936 0.99829 1.32307 0.86238 0.77779 0.76887 0.85063 1.21237 1.21586 1.21202 1.21699 1.00993 0.90497 0.83796 1.22603 0.79262 0.96296 1.00784 0.90732 1.20939 0.97016 0.95300 0.98278 0.92556 0.92653 0.92631 0.90362 0.92055 0.92558 0.92686 0.86580 0.86439 0.86595 0.88300 0.88654 0.91365 0.91233 0.89983 0.91352 0.95839 0.96284 0.93622 0.96213 0.87582 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.01 37.16 0.33 -1.04 16 2 C -0.06 -0.71 3.09 -91.77 -0.28 -0.99 16 3 C -0.14 -1.69 9.01 37.16 0.33 -1.36 16 4 C -0.07 -1.03 4.78 -104.62 -0.50 -1.53 16 5 C -0.12 -1.51 8.71 -39.58 -0.34 -1.86 16 6 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 7 C -0.11 -1.53 9.70 -39.58 -0.38 -1.92 16 8 C -0.06 -0.83 4.37 -104.62 -0.46 -1.29 16 9 C -0.10 -1.40 4.83 -29.04 -0.14 -1.54 16 10 C 0.53 10.08 7.50 -10.99 -0.08 10.00 16 11 O -0.52 -12.31 15.77 5.55 0.09 -12.23 16 12 N -0.60 -10.86 3.04 -162.89 -0.50 -11.36 16 13 C 0.10 1.43 6.22 -3.15 -0.02 1.41 16 14 C -0.12 -1.55 6.22 -25.19 -0.16 -1.70 16 15 C -0.11 -1.82 4.25 -87.88 -0.37 -2.19 16 16 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 17 C 0.14 2.89 6.44 -3.60 -0.02 2.86 16 18 N -0.60 -15.49 3.38 -172.00 -0.58 -16.07 16 19 C -0.23 -6.57 10.25 -15.06 -0.15 -6.72 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 22 N -0.91 -27.94 10.16 55.49 0.56 -27.37 16 23 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.16 4.00 5.22 -3.47 -0.02 3.98 16 28 C 0.11 2.29 3.62 -66.16 -0.24 2.05 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 30 C -0.10 -1.52 9.33 -39.58 -0.37 -1.89 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.50 7.39 -51.93 -0.38 0.12 16 34 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.58 7.39 -51.93 -0.38 0.20 16 38 H 0.12 1.23 7.10 -52.49 -0.37 0.86 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.10 1.32 8.09 -51.93 -0.42 0.90 16 42 H 0.10 1.06 7.78 -51.93 -0.40 0.65 16 43 H 0.07 0.73 7.46 -51.93 -0.39 0.34 16 44 H 0.07 1.07 7.55 -51.93 -0.39 0.67 16 45 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.02 0.46 6.84 -51.93 -0.36 0.11 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.11 3.17 5.36 -51.93 -0.28 2.89 16 52 H 0.12 1.90 7.95 -52.48 -0.42 1.48 16 LS Contribution 405.58 15.07 6.11 6.11 Total: -1.00 -34.61 405.58 -11.52 -46.13 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.81 Total: 3.11 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.37 Total: -5.89 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.51 Total: -54.80 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.61 -11.52 -46.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075988987.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.951 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds