Wall clock time and date at job start Wed Apr 1 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99981 * 2 1 4 4 C 1.38238 * 120.00135 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.99605 * 359.95728 * 4 3 2 6 6 C 1.50703 * 119.99759 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47301 * 89.99865 * 6 5 4 8 8 H 1.08995 * 109.47043 * 305.00336 * 7 6 5 9 9 C 1.53000 * 109.46834 * 64.99958 * 7 6 5 10 10 C 1.50699 * 109.47102 * 184.99948 * 7 6 5 11 11 O 1.21280 * 120.00291 * 332.49375 * 10 7 6 12 12 N 1.34771 * 119.99576 * 152.48971 * 10 7 6 13 13 C 1.47344 * 125.52193 * 173.90231 * 12 10 7 14 14 C 1.54956 * 104.90311 * 156.77205 * 13 12 10 15 15 C 1.54786 * 101.45387 * 37.25617 * 14 13 12 16 16 H 1.08998 * 112.84709 * 86.23848 * 15 14 13 17 17 C 1.53514 * 109.68400 * 212.92635 * 15 14 13 18 18 N 1.46650 * 107.05167 * 84.08912 * 17 15 14 19 19 C 1.36933 * 125.28761 * 197.35842 * 18 17 15 20 20 H 1.08004 * 120.00081 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00003 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00046 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99949 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47266 * 90.00276 * 23 21 19 25 25 H 1.48504 * 109.46895 * 209.99896 * 23 21 19 26 26 H 1.48493 * 109.47071 * 329.99783 * 23 21 19 27 27 C 1.46491 * 109.42445 * 17.38122 * 18 17 15 28 28 C 1.47368 * 125.55273 * 353.94899 * 12 10 7 29 29 H 1.08998 * 112.75320 * 56.10651 * 28 12 10 30 30 C 1.38229 * 120.00442 * 0.27551 * 5 4 3 31 31 C 1.38234 * 120.00169 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47295 * 89.99725 * 1 2 3 33 33 H 1.09000 * 109.46896 * 209.99679 * 1 2 3 34 34 H 1.08997 * 109.46781 * 329.99326 * 1 2 3 35 35 H 1.08005 * 119.99988 * 359.97438 * 3 2 1 36 36 H 1.08000 * 119.99800 * 179.97438 * 4 3 2 37 37 H 1.09007 * 109.47239 * 330.00116 * 6 5 4 38 38 H 1.09002 * 109.47147 * 210.00036 * 6 5 4 39 39 H 1.09001 * 109.47196 * 53.76201 * 9 7 6 40 40 H 1.08995 * 109.47038 * 173.76410 * 9 7 6 41 41 H 1.08998 * 109.47253 * 293.76541 * 9 7 6 42 42 H 1.09003 * 110.35802 * 37.91293 * 13 12 10 43 43 H 1.09006 * 110.44829 * 275.67474 * 13 12 10 44 44 H 1.09002 * 111.02513 * 279.21233 * 14 13 12 45 45 H 1.09000 * 111.05941 * 155.31515 * 14 13 12 46 46 H 1.08996 * 109.92022 * 324.73873 * 17 15 14 47 47 H 1.09001 * 110.08374 * 203.53126 * 17 15 14 48 48 H 0.96995 * 120.00261 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.71893 * 117.76555 * 27 18 17 50 50 H 1.08996 * 109.71712 * 238.36457 * 27 18 17 51 51 H 1.07997 * 120.00327 * 179.72810 * 30 5 4 52 52 H 1.07995 * 119.99905 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0002 6 6 5.7787 0.0001 -0.0002 7 6 6.2888 0.0005 1.4424 8 1 5.8541 0.8424 1.9811 9 6 5.8840 -1.3066 2.1268 10 6 7.7907 0.1243 1.4441 11 8 8.4338 -0.2823 0.4996 12 7 8.4191 0.6870 2.4951 13 6 9.8789 0.7560 2.6831 14 6 10.1011 1.9521 3.6428 15 6 8.8873 1.8132 4.5932 16 1 9.0769 1.1353 5.4255 17 6 8.4276 3.2043 5.0516 18 7 7.5398 3.7290 4.0089 19 6 7.1869 5.0434 3.8584 20 1 7.5711 5.7873 4.5406 21 6 6.3361 5.4200 2.8282 22 7 5.8682 4.5136 1.9964 23 14 5.8551 7.2133 2.6223 24 1 6.8311 7.8882 1.7295 25 1 4.4981 7.2964 2.0250 26 1 5.8538 7.8808 3.9488 27 6 7.0888 2.6283 3.1539 28 6 7.7584 1.3324 3.6434 29 1 7.0518 0.6736 4.1482 30 6 3.5806 -1.1971 -0.0050 31 6 2.1982 -1.1971 0.0005 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5139 35 1 1.6582 2.1325 -0.0004 36 1 4.1205 2.1325 -0.0010 37 1 6.1421 0.8899 -0.5143 38 1 6.1421 -0.8901 -0.5138 39 1 6.2245 -2.1511 1.5276 40 1 6.3400 -1.3554 3.1156 41 1 4.7991 -1.3447 2.2247 42 1 10.3758 0.9372 1.7300 43 1 10.2488 -0.1652 3.1334 44 1 10.0686 2.8982 3.1026 45 1 11.0390 1.8476 4.1883 46 1 9.2901 3.8602 5.1696 47 1 7.8875 3.1279 5.9953 48 1 5.2735 4.7766 1.2768 49 1 6.0053 2.5306 3.2212 50 1 7.3768 2.8234 2.1209 51 1 4.1206 -2.1323 -0.0092 52 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076614229.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:32 Heat of formation + Delta-G solvation = -9.140531 kcal Electronic energy + Delta-G solvation = -31299.338507 eV Core-core repulsion = 27455.977327 eV Total energy + Delta-G solvation = -3843.361181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.73230 -40.45789 -39.50974 -36.58819 -36.15756 -34.02950 -33.30080 -32.17262 -31.77616 -30.33636 -29.23986 -28.31968 -26.51574 -26.42198 -24.86877 -23.56289 -22.66403 -22.35511 -21.35404 -21.18504 -19.71182 -18.99632 -18.17934 -17.42754 -16.74814 -16.55961 -16.47662 -16.22511 -15.93043 -15.83300 -15.29449 -15.20581 -15.03044 -14.54972 -14.34685 -14.27817 -14.22074 -13.77869 -13.62304 -13.47100 -13.33712 -13.27448 -13.12309 -12.91677 -12.88021 -12.81900 -12.71056 -12.62075 -12.17685 -12.12497 -12.03146 -11.92222 -11.83696 -11.78273 -11.69466 -11.51327 -11.46805 -10.75299 -10.70161 -9.78019 -9.66406 -9.34000 -8.85741 -7.83515 -5.18961 0.42931 0.53569 1.43734 1.44392 1.52933 1.58154 2.01809 2.48335 2.85422 3.29281 3.35173 3.47488 3.74912 3.77818 3.87012 3.94205 3.99720 4.05374 4.10413 4.18875 4.22047 4.28036 4.32579 4.40657 4.46113 4.49359 4.57891 4.63872 4.73267 4.78081 4.79975 4.83208 4.86101 4.87706 4.92844 4.94056 5.02710 5.09471 5.10246 5.17190 5.19044 5.26079 5.28686 5.33675 5.47042 5.50247 5.53031 5.55947 5.73870 5.75614 5.79602 6.17301 6.21288 6.52567 7.10183 7.14281 7.80844 8.40774 9.24463 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.004528 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.196895 B = 6182.112324 C = 8689.049276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.090 4.090 6 C -0.051 4.051 7 C -0.099 4.099 8 H 0.080 0.920 9 C -0.128 4.128 10 C 0.535 3.465 11 O -0.586 6.586 12 N -0.608 5.608 13 C 0.104 3.896 14 C -0.113 4.113 15 C -0.093 4.093 16 H 0.139 0.861 17 C 0.137 3.863 18 N -0.622 5.622 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.060 4.060 22 N -0.940 5.940 23 Si 0.969 3.031 24 H -0.292 1.292 25 H -0.297 1.297 26 H -0.267 1.267 27 C 0.193 3.807 28 C 0.111 3.889 29 H 0.104 0.896 30 C -0.109 4.109 31 C -0.121 4.121 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.045 0.955 45 H 0.119 0.881 46 H 0.045 0.955 47 H 0.031 0.969 48 H 0.243 0.757 49 H 0.007 0.993 50 H 0.009 0.991 51 H 0.142 0.858 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -14.673 2.448 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.089 4.089 7 C -0.120 4.120 8 H 0.098 0.902 9 C -0.185 4.185 10 C 0.326 3.674 11 O -0.467 6.467 12 N -0.340 5.340 13 C -0.018 4.018 14 C -0.151 4.151 15 C -0.112 4.112 16 H 0.156 0.844 17 C 0.011 3.989 18 N -0.349 5.349 19 C -0.370 4.370 20 H 0.101 0.899 21 C -0.254 4.254 22 N -0.589 5.589 23 Si 0.798 3.202 24 H -0.219 1.219 25 H -0.224 1.224 26 H -0.191 1.191 27 C 0.067 3.933 28 C 0.007 3.993 29 H 0.122 0.878 30 C -0.127 4.127 31 C -0.139 4.139 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.137 0.863 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.025 0.975 50 H 0.027 0.973 51 H 0.160 0.840 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.168 -14.787 1.787 15.228 hybrid contribution -0.231 1.957 -0.684 2.086 sum -3.398 -12.830 1.103 13.318 Atomic orbital electron populations 1.20815 0.89246 1.03536 1.03057 1.20248 0.97541 0.92705 0.99145 1.21157 0.93623 0.98678 1.01568 1.21130 0.95126 0.97641 1.00441 1.19746 0.94565 0.93722 1.00964 1.20263 0.91502 1.02362 0.94762 1.21227 0.90115 1.02122 0.98529 0.90165 1.21706 1.02781 0.93791 1.00242 1.20635 0.90755 0.75756 0.80274 1.90602 1.69037 1.52063 1.35009 1.48674 1.08108 1.56217 1.20981 1.22357 0.80138 0.99662 0.99594 1.22726 0.99276 0.96666 0.96428 1.23010 0.93527 0.97022 0.97682 0.84359 1.21334 0.92997 0.93107 0.91417 1.44371 1.54568 1.03552 1.32382 1.19387 1.23025 0.83943 1.10662 0.89857 1.25542 1.00492 1.01275 0.98051 1.70173 1.37194 1.32543 1.18994 0.85213 0.76598 0.80411 0.77941 1.21897 1.22381 1.19130 1.21018 0.94708 0.84713 0.92836 1.22867 0.96248 0.93785 0.86392 0.87789 1.21237 0.94630 0.97213 0.99590 1.21324 0.93836 0.98297 1.00458 0.90252 0.89885 0.91652 0.86167 0.88605 0.93975 0.89662 0.91085 0.91578 0.90285 0.92606 0.88696 0.93611 0.86280 0.93704 0.95163 0.94768 0.97502 0.97257 0.83982 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 10.01 71.24 0.71 -1.15 16 2 C -0.10 -2.31 5.88 -19.87 -0.12 -2.42 16 3 C -0.13 -3.94 9.70 22.27 0.22 -3.73 16 4 C -0.13 -4.35 9.70 22.27 0.22 -4.13 16 5 C -0.09 -2.80 4.71 -19.87 -0.09 -2.89 16 6 C -0.05 -1.74 4.32 29.85 0.13 -1.61 16 7 C -0.10 -3.36 2.29 -11.54 -0.03 -3.38 16 8 H 0.08 3.19 5.73 -2.39 -0.01 3.17 16 9 C -0.13 -3.25 8.56 71.98 0.62 -2.63 16 10 C 0.54 20.49 6.63 87.66 0.58 21.07 16 11 O -0.59 -25.33 16.46 -3.03 -0.05 -25.38 16 12 N -0.61 -21.46 2.83 -784.13 -2.22 -23.68 16 13 C 0.10 3.10 6.91 86.89 0.60 3.71 16 14 C -0.11 -3.16 6.32 31.87 0.20 -2.96 16 15 C -0.09 -2.68 3.97 -9.27 -0.04 -2.71 16 16 H 0.14 2.77 8.14 -2.39 -0.02 2.76 16 17 C 0.14 5.02 6.50 86.52 0.56 5.58 16 18 N -0.62 -30.64 3.37 -698.97 -2.36 -33.00 16 19 C -0.24 -13.21 10.25 84.04 0.86 -12.35 16 20 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 21 C -0.06 -3.38 5.48 84.86 0.47 -2.92 16 22 N -0.94 -55.96 10.23 21.65 0.22 -55.74 16 23 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C 0.19 9.23 3.70 86.67 0.32 9.55 16 28 C 0.11 3.88 3.35 45.86 0.15 4.03 16 29 H 0.10 3.21 8.09 -2.39 -0.02 3.19 16 30 C -0.11 -2.66 8.15 22.27 0.18 -2.48 16 31 C -0.12 -2.64 9.70 22.27 0.22 -2.42 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 34 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 35 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.10 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.04 1.67 8.09 -2.38 -0.02 1.65 16 38 H 0.08 2.69 7.97 -2.39 -0.02 2.67 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 41 H 0.08 1.86 6.70 -2.39 -0.02 1.84 16 42 H 0.06 1.85 7.99 -2.39 -0.02 1.84 16 43 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.04 1.65 7.93 -2.39 -0.02 1.64 16 45 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.04 1.60 7.95 -2.39 -0.02 1.58 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.01 0.37 6.94 -2.39 -0.02 0.36 16 50 H 0.01 0.53 6.88 -2.39 -0.02 0.51 16 51 H 0.14 2.77 8.05 -2.91 -0.02 2.75 16 52 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -72.46 405.65 4.27 -68.19 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.88 Total: 25.50 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 5.76 Total: -3.86 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -4.35 Total: -112.41 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.46 4.27 -68.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076614229.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.050 kcal (2) G-P(sol) polarization free energy of solvation -72.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds