Wall clock time and date at job start Wed Apr 1 2020 01:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00155 * 2 1 4 4 C 1.38233 * 120.00410 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99803 * 359.95052 * 4 3 2 6 6 C 1.50698 * 120.00393 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47184 * 89.99646 * 6 5 4 8 8 H 1.09007 * 109.46744 * 55.00219 * 7 6 5 9 9 C 1.52995 * 109.47234 * 295.00598 * 7 6 5 10 10 C 1.50703 * 109.47148 * 175.00254 * 7 6 5 11 11 O 1.21279 * 119.99456 * 0.02562 * 10 7 6 12 12 N 1.34774 * 119.99766 * 180.02562 * 10 7 6 13 13 C 1.47342 * 125.52580 * 359.69454 * 12 10 7 14 14 C 1.55165 * 104.79670 * 156.68396 * 13 12 10 15 15 C 1.54785 * 101.35552 * 37.54389 * 14 13 12 16 16 H 1.08994 * 113.40589 * 85.64019 * 15 14 13 17 17 C 1.55248 * 109.36702 * 213.79408 * 15 14 13 18 18 N 1.46654 * 107.50493 * 84.70691 * 17 15 14 19 19 C 1.36932 * 125.28985 * 196.72895 * 18 17 15 20 20 H 1.08005 * 119.99926 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00021 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00265 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00032 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46807 * 60.00117 * 23 21 19 25 25 H 1.48496 * 109.46889 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46994 * 300.00395 * 23 21 19 27 27 C 1.46498 * 109.42154 * 16.75104 * 18 17 15 28 28 C 1.47251 * 125.51913 * 179.97438 * 12 10 7 29 29 H 1.09000 * 111.94585 * 56.60155 * 28 12 10 30 30 C 1.38237 * 119.99938 * 0.27749 * 5 4 3 31 31 C 1.38232 * 120.00144 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46814 * 90.00300 * 1 2 3 33 33 H 1.08999 * 109.47428 * 210.00695 * 1 2 3 34 34 H 1.09005 * 109.47245 * 330.00806 * 1 2 3 35 35 H 1.08008 * 120.00024 * 359.97416 * 3 2 1 36 36 H 1.07995 * 120.00211 * 179.97438 * 4 3 2 37 37 H 1.09001 * 109.46665 * 330.00035 * 6 5 4 38 38 H 1.08993 * 109.47304 * 209.99591 * 6 5 4 39 39 H 1.09003 * 109.47743 * 59.99455 * 9 7 6 40 40 H 1.09002 * 109.47112 * 179.97438 * 9 7 6 41 41 H 1.09006 * 109.47389 * 299.99793 * 9 7 6 42 42 H 1.08996 * 110.35265 * 275.63555 * 13 12 10 43 43 H 1.09003 * 110.35387 * 37.92177 * 13 12 10 44 44 H 1.09004 * 111.21476 * 279.47028 * 14 13 12 45 45 H 1.09002 * 110.96496 * 155.50785 * 14 13 12 46 46 H 1.09001 * 110.21962 * 324.91747 * 17 15 14 47 47 H 1.09004 * 109.33964 * 203.99768 * 17 15 14 48 48 H 0.96996 * 120.00135 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.71197 * 238.31612 * 27 18 17 50 50 H 1.09001 * 109.67454 * 117.74688 * 27 18 17 51 51 H 1.08000 * 119.99953 * 179.73050 * 30 5 4 52 52 H 1.08004 * 120.00066 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 0.0000 7 6 6.2887 0.0006 1.4425 8 1 5.8540 -0.8410 1.9819 9 6 5.8840 1.3082 2.1260 10 6 7.7907 -0.1232 1.4444 11 8 8.3937 -0.2036 0.3952 12 7 8.4636 -0.1447 2.6119 13 6 7.8573 -0.0492 3.9514 14 6 8.8926 -0.7054 4.9027 15 6 10.2259 -0.2279 4.2781 16 1 10.5415 0.7543 4.6297 17 6 11.3026 -1.3321 4.4564 18 7 11.1507 -2.2795 3.3473 19 6 11.6756 -3.5436 3.3091 20 1 12.2547 -3.9132 4.1425 21 6 11.4626 -4.3504 2.1998 22 7 10.7566 -3.9002 1.1844 23 14 12.1793 -6.0747 2.1475 24 1 11.6383 -6.8701 3.2788 25 1 11.8115 -6.7249 0.8641 26 1 13.6583 -5.9996 2.2579 27 6 10.3507 -1.6630 2.2861 28 6 9.9244 -0.2616 2.7553 29 1 10.4510 0.5263 2.2167 30 6 3.5805 -1.1971 -0.0048 31 6 2.1982 -1.1971 0.0005 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3634 0.8901 0.5137 35 1 1.6582 2.1325 -0.0004 36 1 4.1205 2.1325 -0.0010 37 1 6.1420 0.8897 -0.5143 38 1 6.1420 -0.8902 -0.5134 39 1 4.7976 1.3979 2.1246 40 1 6.2469 1.3084 3.1538 41 1 6.3186 2.1499 1.5866 42 1 7.6985 0.9946 4.2221 43 1 6.9153 -0.5969 3.9811 44 1 8.8166 -1.7926 4.8788 45 1 8.7805 -0.3299 5.9199 46 1 11.1604 -1.8470 5.4066 47 1 12.2933 -0.8788 4.4246 48 1 10.6080 -4.4639 0.4091 49 1 9.4666 -2.2704 2.0922 50 1 10.9470 -1.5811 1.3774 51 1 4.1206 -2.1324 -0.0088 52 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076614230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:38 Heat of formation + Delta-G solvation = 11.690890 kcal Electronic energy + Delta-G solvation = -30488.943800 eV Core-core repulsion = 26646.485938 eV Total energy + Delta-G solvation = -3842.457862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.30960 -39.53715 -37.92690 -35.19923 -34.86027 -32.56450 -31.83408 -31.02789 -30.60191 -28.89169 -28.07644 -26.68905 -25.58508 -24.51533 -23.43804 -22.78537 -21.84760 -20.80245 -20.22113 -19.44177 -18.49113 -17.05091 -16.64106 -15.94681 -15.71456 -15.48585 -15.35706 -15.05538 -14.53524 -14.35168 -14.07899 -13.90992 -13.51649 -13.49821 -13.36243 -13.05716 -12.84374 -12.64040 -12.50972 -12.25910 -12.16776 -12.05245 -12.00770 -11.67787 -11.43450 -11.22297 -11.12760 -11.06384 -10.95040 -10.90618 -10.82575 -10.73286 -10.41434 -10.19850 -9.99649 -9.83512 -9.66999 -9.25229 -8.99419 -8.55493 -8.52948 -8.10754 -6.76654 -5.63055 -2.99916 1.22374 1.31113 3.12227 3.36014 3.43314 3.47241 3.49575 3.67035 4.53439 4.54198 4.67848 4.72320 4.84358 4.90074 4.93645 4.95727 4.99043 5.15145 5.17941 5.26106 5.34504 5.38268 5.45769 5.49884 5.53784 5.56050 5.58558 5.61291 5.70808 5.75614 5.78721 5.81864 5.83968 5.95397 5.98961 6.00917 6.09303 6.15973 6.23291 6.27044 6.33868 6.41986 6.47512 6.62375 6.62956 6.63954 6.69721 6.89515 6.93015 7.63731 7.68243 7.95915 8.05924 8.34721 8.67645 9.27984 9.88904 10.52111 11.45949 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.002762 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.510295 B =10133.353624 C =11330.202103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.122 4.122 4 C -0.112 4.112 5 C -0.078 4.078 6 C -0.063 4.063 7 C -0.098 4.098 8 H 0.094 0.906 9 C -0.152 4.152 10 C 0.530 3.470 11 O -0.529 6.529 12 N -0.606 5.606 13 C 0.102 3.898 14 C -0.122 4.122 15 C -0.113 4.113 16 H 0.089 0.911 17 C 0.147 3.853 18 N -0.602 5.602 19 C -0.235 4.235 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.913 5.913 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.181 3.819 28 C 0.114 3.886 29 H 0.076 0.924 30 C -0.111 4.111 31 C -0.119 4.119 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.015 0.985 48 H 0.253 0.747 49 H 0.056 0.944 50 H 0.043 0.957 51 H 0.124 0.876 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.495 12.511 3.249 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.140 4.140 4 C -0.130 4.130 5 C -0.078 4.078 6 C -0.101 4.101 7 C -0.119 4.119 8 H 0.112 0.888 9 C -0.209 4.209 10 C 0.317 3.683 11 O -0.405 6.405 12 N -0.341 5.341 13 C -0.021 4.021 14 C -0.160 4.160 15 C -0.132 4.132 16 H 0.108 0.892 17 C 0.020 3.980 18 N -0.329 5.329 19 C -0.363 4.363 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.560 5.560 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.055 3.945 28 C 0.010 3.990 29 H 0.094 0.906 30 C -0.129 4.129 31 C -0.137 4.137 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.032 0.968 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.142 0.858 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.218 12.282 2.425 22.105 hybrid contribution 0.371 -0.970 -0.044 1.039 sum -17.847 11.313 2.381 21.264 Atomic orbital electron populations 1.20771 0.91481 1.02574 1.02127 1.19889 0.95891 0.93317 1.00571 1.20986 0.94167 0.97340 1.01476 1.21062 0.93969 0.97671 1.00258 1.19924 0.95666 0.93101 0.99070 1.20421 0.89765 1.04639 0.95248 1.21179 0.92420 1.00420 0.97931 0.88802 1.21991 1.02102 0.95863 1.00932 1.20116 0.89076 0.76467 0.82604 1.90734 1.70014 1.49207 1.30535 1.48560 1.07719 1.72574 1.05215 1.22408 0.97121 0.99647 0.82910 1.22801 0.93633 1.02065 0.97478 1.23273 0.96386 0.99094 0.94469 0.89250 1.21337 0.94426 0.89703 0.92544 1.44109 1.61425 1.12354 1.14998 1.18943 1.27229 0.88144 1.01967 0.90470 1.24850 1.00282 0.98566 0.96584 1.69999 1.43006 1.35870 1.07104 0.86228 0.78676 0.84206 0.76779 1.21222 1.21627 1.21160 1.21243 0.95936 0.86563 0.90710 1.22870 0.79614 1.00934 0.95567 0.90569 1.21143 0.94095 0.97976 0.99726 1.21020 0.94182 0.97444 1.01049 0.91393 0.91683 0.91738 0.86367 0.86075 0.90351 0.89767 0.91415 0.91558 0.92301 0.91750 0.91161 0.89569 0.90632 0.94426 0.96772 0.93647 0.92634 0.93835 0.85840 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.10 -0.91 5.88 -104.63 -0.62 -1.53 16 3 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 4 C -0.11 -1.14 7.96 -39.58 -0.32 -1.46 16 5 C -0.08 -0.90 4.71 -104.62 -0.49 -1.39 16 6 C -0.06 -0.84 4.19 -27.88 -0.12 -0.96 16 7 C -0.10 -1.32 2.07 -91.77 -0.19 -1.51 16 8 H 0.09 1.24 7.85 -51.93 -0.41 0.83 16 9 C -0.15 -1.60 8.57 37.15 0.32 -1.28 16 10 C 0.53 9.63 6.90 -10.99 -0.08 9.55 16 11 O -0.53 -11.95 15.96 5.56 0.09 -11.86 16 12 N -0.61 -10.56 2.84 -161.70 -0.46 -11.02 16 13 C 0.10 1.35 5.13 -2.44 -0.01 1.34 16 14 C -0.12 -1.74 6.38 -24.65 -0.16 -1.90 16 15 C -0.11 -1.86 4.10 -87.28 -0.36 -2.21 16 16 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 17 C 0.15 2.97 6.52 -2.77 -0.02 2.96 16 18 N -0.60 -15.57 3.37 -171.21 -0.58 -16.15 16 19 C -0.23 -6.63 10.25 -15.06 -0.15 -6.79 16 20 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 21 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 22 N -0.91 -28.02 10.23 55.49 0.57 -27.45 16 23 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.18 4.65 4.61 -3.62 -0.02 4.63 16 28 C 0.11 2.26 3.75 -65.90 -0.25 2.01 16 29 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 30 C -0.11 -1.27 9.70 -39.58 -0.38 -1.66 16 31 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 37 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.08 1.28 7.90 -51.93 -0.41 0.87 16 39 H 0.07 0.64 6.27 -51.93 -0.33 0.32 16 40 H 0.07 0.65 4.96 -51.93 -0.26 0.39 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.69 7.02 -51.93 -0.36 0.33 16 43 H 0.07 0.84 7.39 -51.93 -0.38 0.46 16 44 H 0.09 1.49 7.91 -51.93 -0.41 1.08 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.04 0.73 7.97 -51.93 -0.41 0.32 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.06 1.61 6.86 -51.93 -0.36 1.26 16 50 H 0.04 1.30 7.51 -51.93 -0.39 0.91 16 51 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 52 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -34.07 402.00 -11.44 -45.50 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.75 Total: 1.37 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.34 Total: -4.01 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.47 Total: -54.63 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.07 -11.44 -45.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076614230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.196 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds