Wall clock time and date at job start Wed Apr 1 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.99676 * 2 1 4 4 C 1.38216 * 119.99908 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99986 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00050 * 359.81199 * 5 4 3 7 7 C 1.38205 * 120.00370 * 180.02562 * 2 1 3 8 8 C 1.50700 * 119.99867 * 359.97438 * 7 2 1 9 9 C 1.52999 * 109.47360 * 279.20616 * 8 7 2 10 10 H 1.08998 * 109.47410 * 54.49071 * 9 8 7 11 11 C 1.53006 * 109.46626 * 294.49518 * 9 8 7 12 12 C 1.50696 * 109.47488 * 174.49402 * 9 8 7 13 13 O 1.21282 * 119.99935 * 359.97438 * 12 9 8 14 14 N 1.34776 * 120.00215 * 179.71905 * 12 9 8 15 15 C 1.47347 * 125.52226 * 359.69954 * 14 12 9 16 16 C 1.55163 * 104.79620 * 156.67917 * 15 14 12 17 17 C 1.54784 * 101.35335 * 37.54167 * 16 15 14 18 18 H 1.09007 * 113.40470 * 85.63827 * 17 16 15 19 19 C 1.53519 * 109.68661 * 212.75369 * 17 16 15 20 20 N 1.46649 * 107.05208 * 84.08967 * 19 17 16 21 21 C 1.36928 * 125.29041 * 197.35955 * 20 19 17 22 22 H 1.08000 * 120.00297 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00097 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99906 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00091 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47037 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47408 * 119.99873 * 25 23 21 28 28 H 1.48499 * 109.47065 * 239.99841 * 25 23 21 29 29 C 1.46497 * 109.41999 * 17.38124 * 20 19 17 30 30 C 1.47256 * 125.52686 * 179.97438 * 14 12 9 31 31 H 1.08998 * 111.94395 * 55.57203 * 30 14 12 32 32 H 1.08999 * 109.47079 * 265.20353 * 1 2 3 33 33 H 1.09000 * 109.47248 * 25.20420 * 1 2 3 34 34 H 1.09001 * 109.46843 * 145.20431 * 1 2 3 35 35 H 1.07999 * 120.00304 * 359.97431 * 3 2 1 36 36 H 1.08003 * 120.00087 * 179.97438 * 4 3 2 37 37 H 1.07999 * 119.99942 * 179.97438 * 5 4 3 38 38 H 1.07991 * 120.00250 * 180.23744 * 6 5 4 39 39 H 1.08999 * 109.47258 * 159.20105 * 8 7 2 40 40 H 1.09006 * 109.47236 * 39.20387 * 8 7 2 41 41 H 1.08996 * 109.47350 * 53.30064 * 11 9 8 42 42 H 1.09000 * 109.46884 * 173.29692 * 11 9 8 43 43 H 1.08998 * 109.47267 * 293.29243 * 11 9 8 44 44 H 1.09006 * 110.35340 * 275.63141 * 15 14 12 45 45 H 1.09001 * 110.35297 * 37.91861 * 15 14 12 46 46 H 1.08991 * 111.21771 * 279.47054 * 16 15 14 47 47 H 1.09001 * 110.96043 * 155.50320 * 16 15 14 48 48 H 1.08995 * 109.91650 * 324.73680 * 19 17 16 49 49 H 1.09005 * 110.08732 * 203.53440 * 19 17 16 50 50 H 0.96995 * 120.00227 * 179.97438 * 24 23 21 51 51 H 1.09007 * 109.71240 * 238.31963 * 29 20 19 52 52 H 1.08990 * 109.67593 * 117.74562 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5807 -1.1969 0.0061 7 6 2.1981 -1.1968 -0.0005 8 6 1.4447 -2.5020 -0.0005 9 6 0.9903 -2.8287 1.4235 10 1 0.4211 -1.9901 1.8246 11 6 2.2157 -3.0812 2.3043 12 6 0.1231 -4.0609 1.4039 13 8 -0.1091 -4.6224 0.3542 14 7 -0.3901 -4.5421 2.5535 15 6 -0.1779 -3.9662 3.8930 16 6 -1.3872 -4.4577 4.7318 17 6 -1.5741 -5.8935 4.1846 18 1 -0.9437 -6.6315 4.6808 19 6 -3.0627 -6.2677 4.2122 20 7 -3.6636 -5.7320 2.9864 21 6 -5.0044 -5.5493 2.7772 22 1 -5.7120 -5.8078 3.5511 23 6 -5.4545 -5.0326 1.5699 24 7 -4.5923 -4.7179 0.6265 25 14 -7.2835 -4.7826 1.2847 26 1 -8.0357 -5.2105 2.4915 27 1 -7.5512 -3.3467 1.0174 28 1 -7.7179 -5.5926 0.1183 29 6 -2.6065 -5.4232 2.0204 30 6 -1.2493 -5.7319 2.6751 31 1 -0.7816 -6.6177 2.2452 32 1 -0.3633 -0.0859 1.0241 33 1 -0.3634 0.9298 -0.4376 34 1 -0.3633 -0.8439 -0.5865 35 1 1.6582 2.1327 -0.0004 36 1 4.1204 2.1328 0.0001 37 1 5.3517 0.0001 0.0016 38 1 4.1207 -2.1321 0.0108 39 1 2.0948 -3.2969 -0.3659 40 1 0.5730 -2.4184 -0.6498 41 1 2.9007 -2.2372 2.2245 42 1 1.9001 -3.1961 3.3413 43 1 2.7189 -3.9901 1.9748 44 1 0.7561 -4.3322 4.3194 45 1 -0.1709 -2.8775 3.8408 46 1 -2.2715 -3.8491 4.5432 47 1 -1.1445 -4.4726 5.7943 48 1 -3.5411 -5.8237 5.0851 49 1 -3.1759 -7.3516 4.2382 50 1 -4.9067 -4.3572 -0.2172 51 1 -2.6525 -4.3682 1.7497 52 1 -2.7331 -6.0373 1.1290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076619825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:46 Heat of formation + Delta-G solvation = 13.347658 kcal Electronic energy + Delta-G solvation = -31057.511118 eV Core-core repulsion = 27215.125098 eV Total energy + Delta-G solvation = -3842.386020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.38957 -39.60521 -37.93781 -35.01099 -34.76076 -32.78503 -32.22423 -30.90639 -30.57247 -28.56842 -27.29240 -26.75322 -26.48737 -24.52623 -23.72659 -22.18557 -21.92811 -20.74094 -20.13565 -19.41181 -18.50630 -17.05985 -16.67468 -16.18236 -15.87742 -15.53318 -15.38993 -14.86848 -14.57016 -14.35746 -14.06233 -13.69259 -13.45258 -13.36000 -13.24460 -12.99119 -12.90520 -12.56213 -12.47359 -12.24043 -12.16178 -12.04598 -11.95919 -11.71889 -11.45215 -11.26037 -11.12506 -11.03200 -10.93678 -10.86434 -10.77587 -10.72780 -10.44936 -10.15769 -10.00202 -9.82593 -9.68149 -9.25311 -8.86414 -8.61669 -8.55070 -8.11131 -6.77347 -5.64062 -3.00696 1.26615 1.29780 3.11392 3.35979 3.42200 3.47161 3.50228 3.68877 4.52951 4.53654 4.72785 4.80534 4.85991 4.89545 4.91236 4.95832 5.02920 5.15610 5.23642 5.27481 5.37416 5.45016 5.49506 5.55550 5.59208 5.60711 5.64014 5.71503 5.76888 5.76964 5.83283 5.84518 5.88512 5.96429 5.98697 6.08254 6.09292 6.15923 6.23333 6.33280 6.40673 6.42060 6.42164 6.62111 6.63461 6.66770 6.69591 6.89298 6.94534 7.63447 7.67651 7.94901 8.05171 8.33671 8.66599 9.27267 9.88143 10.51198 11.45071 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013340 B = 0.003153 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.465925 B = 8878.630339 C =10153.690883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.120 4.120 4 C -0.125 4.125 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.075 4.075 8 C -0.064 4.064 9 C -0.098 4.098 10 H 0.094 0.906 11 C -0.150 4.150 12 C 0.530 3.470 13 O -0.530 6.530 14 N -0.606 5.606 15 C 0.103 3.897 16 C -0.121 4.121 17 C -0.110 4.110 18 H 0.087 0.913 19 C 0.145 3.855 20 N -0.602 5.602 21 C -0.233 4.233 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.913 5.913 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.180 3.820 30 C 0.114 3.886 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.038 0.962 49 H 0.016 0.984 50 H 0.252 0.748 51 H 0.056 0.944 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.221 9.032 5.045 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.130 4.130 7 C -0.075 4.075 8 C -0.102 4.102 9 C -0.120 4.120 10 H 0.112 0.888 11 C -0.207 4.207 12 C 0.318 3.682 13 O -0.406 6.406 14 N -0.340 5.340 15 C -0.021 4.021 16 C -0.159 4.159 17 C -0.130 4.130 18 H 0.105 0.895 19 C 0.018 3.982 20 N -0.329 5.329 21 C -0.361 4.361 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.560 5.560 25 Si 0.740 3.260 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.055 3.945 30 C 0.010 3.990 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.056 0.944 49 H 0.034 0.966 50 H 0.062 0.938 51 H 0.074 0.926 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.983 8.837 4.217 20.476 hybrid contribution -0.901 0.236 -0.182 0.949 sum 17.082 9.073 4.035 19.759 Atomic orbital electron populations 1.20916 0.90963 1.03195 1.02825 1.19851 0.96222 0.92559 0.99169 1.21033 0.94236 0.97417 1.01151 1.21083 0.94303 0.97910 1.00977 1.21082 0.99612 0.92584 1.01325 1.21062 0.93562 0.98058 1.00319 1.19789 0.93595 0.94593 0.99507 1.20433 1.00568 0.93511 0.95655 1.21176 0.96751 0.96632 0.97409 0.88792 1.21946 0.96830 1.02372 0.99561 1.20113 0.79993 0.85548 0.82573 1.90732 1.59949 1.60062 1.29833 1.48549 1.50169 1.29104 1.06174 1.22406 0.98129 0.98251 0.83273 1.22796 0.98293 0.96481 0.98352 1.22932 0.98544 0.96708 0.94817 0.89472 1.21062 0.89656 0.96244 0.91227 1.44151 1.02636 1.74816 1.11333 1.19040 0.80972 1.36690 0.99409 0.90384 1.24846 0.97729 1.01272 0.96472 1.70023 1.31482 1.48621 1.05838 0.86081 0.84789 0.77403 0.77690 1.20542 1.21821 1.21762 1.21248 0.81619 1.00774 0.90900 1.22853 0.93313 0.87034 0.95775 0.90379 0.90940 0.91689 0.90578 0.86267 0.86443 0.86399 0.86135 0.90482 0.89457 0.91458 0.91644 0.92326 0.91766 0.91202 0.89531 0.90638 0.94438 0.96641 0.93780 0.92636 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.99 36.01 0.32 -1.08 16 2 C -0.08 -0.90 5.88 -104.63 -0.62 -1.51 16 3 C -0.12 -1.23 9.68 -39.58 -0.38 -1.61 16 4 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 5 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 6 C -0.11 -1.16 8.49 -39.58 -0.34 -1.49 16 7 C -0.07 -0.88 4.47 -104.62 -0.47 -1.34 16 8 C -0.06 -0.85 3.64 -27.88 -0.10 -0.95 16 9 C -0.10 -1.32 2.01 -91.77 -0.18 -1.50 16 10 H 0.09 1.23 6.76 -51.93 -0.35 0.87 16 11 C -0.15 -1.59 8.76 37.16 0.33 -1.27 16 12 C 0.53 9.51 6.93 -10.99 -0.08 9.43 16 13 O -0.53 -11.81 16.00 5.56 0.09 -11.72 16 14 N -0.61 -10.44 2.83 -161.70 -0.46 -10.89 16 15 C 0.10 1.35 5.12 -2.43 -0.01 1.33 16 16 C -0.12 -1.73 6.34 -24.65 -0.16 -1.88 16 17 C -0.11 -1.81 3.97 -88.22 -0.35 -2.16 16 18 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 19 C 0.14 2.91 6.50 -3.69 -0.02 2.89 16 20 N -0.60 -15.45 3.37 -172.30 -0.58 -16.03 16 21 C -0.23 -6.54 10.25 -15.06 -0.15 -6.69 16 22 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 23 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 24 N -0.91 -27.76 10.23 55.49 0.57 -27.19 16 25 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 C 0.18 4.58 4.63 -3.62 -0.02 4.56 16 30 C 0.11 2.24 3.80 -65.90 -0.25 1.99 16 31 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.07 0.82 7.58 -51.93 -0.39 0.43 16 33 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.08 0.98 6.30 -51.93 -0.33 0.65 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 1.09 8.04 -52.49 -0.42 0.67 16 39 H 0.08 1.03 8.02 -51.93 -0.42 0.61 16 40 H 0.09 1.32 6.21 -51.93 -0.32 1.00 16 41 H 0.07 0.65 6.33 -51.93 -0.33 0.32 16 42 H 0.06 0.63 5.17 -51.93 -0.27 0.36 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.69 7.16 -51.93 -0.37 0.32 16 45 H 0.07 0.83 7.32 -51.93 -0.38 0.45 16 46 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 51 H 0.06 1.59 6.89 -51.93 -0.36 1.24 16 52 H 0.04 1.28 7.51 -51.93 -0.39 0.89 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -33.65 396.57 -11.30 -44.95 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.50 Total: 2.21 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -3.37 Total: -4.73 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.47 Total: -54.12 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.65 -11.30 -44.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076619825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.299 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds