Wall clock time and date at job start Wed Apr 1 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47151 * 2 1 4 4 C 1.38385 * 119.85248 * 265.02269 * 3 2 1 5 5 C 1.37941 * 120.14122 * 179.72256 * 4 3 2 6 6 C 1.39596 * 119.85415 * 0.52634 * 5 4 3 7 7 C 1.47843 * 120.14220 * 179.74435 * 6 5 4 8 8 O 1.21552 * 119.99784 * 184.79822 * 7 6 5 9 9 N 1.34780 * 119.99902 * 4.80833 * 7 6 5 10 10 C 1.47412 * 125.58476 * 174.22978 * 9 7 6 11 11 C 1.54862 * 104.81213 * 204.41839 * 10 9 7 12 12 C 1.55160 * 101.73690 * 322.77136 * 11 10 9 13 13 H 1.09002 * 113.90621 * 158.47829 * 12 11 10 14 14 C 1.53753 * 108.31287 * 285.38514 * 12 11 10 15 15 N 1.46594 * 108.11054 * 124.37541 * 14 12 11 16 16 C 1.36933 * 125.31247 * 181.24248 * 15 14 12 17 17 H 1.08000 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.38804 * 119.99991 * 179.72438 * 16 15 14 19 19 N 1.31620 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99947 * 180.02562 * 18 16 15 21 21 H 1.48489 * 109.47251 * 90.00109 * 20 18 16 22 22 H 1.48510 * 109.46674 * 210.00159 * 20 18 16 23 23 H 1.48503 * 109.47154 * 329.99639 * 20 18 16 24 24 C 1.46711 * 109.37637 * 1.51396 * 15 14 12 25 25 C 1.46701 * 125.58964 * 354.24846 * 9 7 6 26 26 H 1.09004 * 111.53257 * 56.08509 * 25 9 7 27 27 C 1.39551 * 119.71120 * 359.47968 * 6 5 4 28 28 C 1.37981 * 119.85323 * 0.24403 * 27 6 5 29 29 C 1.50701 * 119.92878 * 180.02562 * 28 27 6 30 30 C 1.52999 * 109.46974 * 265.00158 * 29 28 27 31 31 H 1.09000 * 109.47024 * 59.99916 * 1 2 3 32 32 H 1.08999 * 109.46812 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47028 * 300.00161 * 1 2 3 34 34 H 1.09001 * 109.47172 * 240.00374 * 2 1 3 35 35 H 1.08994 * 109.47303 * 119.99799 * 2 1 3 36 36 H 1.07998 * 119.92885 * 359.97397 * 4 3 2 37 37 H 1.08004 * 120.06904 * 180.27904 * 5 4 3 38 38 H 1.08998 * 110.36839 * 323.24893 * 10 9 7 39 39 H 1.08995 * 110.37060 * 85.58393 * 10 9 7 40 40 H 1.09008 * 110.97175 * 204.66023 * 11 10 9 41 41 H 1.08999 * 110.97336 * 80.88745 * 11 10 9 42 42 H 1.09000 * 109.74497 * 4.70205 * 14 12 11 43 43 H 1.09006 * 109.73507 * 244.03594 * 14 12 11 44 44 H 0.97004 * 120.00219 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.98917 * 101.17700 * 24 15 14 46 46 H 1.08999 * 109.98621 * 222.48830 * 24 15 14 47 47 H 1.08001 * 120.07412 * 180.27236 * 27 6 5 48 48 H 1.09003 * 109.46963 * 24.99671 * 29 28 27 49 49 H 1.08995 * 109.47679 * 145.00305 * 29 28 27 50 50 H 1.09005 * 109.47205 * 59.99910 * 30 29 28 51 51 H 1.09004 * 109.47323 * 179.97438 * 30 29 28 52 52 H 1.08998 * 109.47560 * 299.99768 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3601 2.0356 -1.1957 5 6 2.8151 3.3378 -1.2031 6 6 2.9550 4.0319 -0.0001 7 6 3.4474 5.4259 -0.0002 8 8 3.6512 5.9985 1.0525 9 7 3.6700 6.0618 -1.1674 10 6 4.0431 7.4804 -1.3139 11 6 3.5747 7.8680 -2.7382 12 6 3.8838 6.5731 -3.5353 13 1 3.3125 6.4758 -4.4585 14 6 5.4037 6.4905 -3.7521 15 7 5.8709 5.2073 -3.2190 16 6 7.1723 4.7814 -3.2082 17 1 7.9499 5.4109 -3.6151 18 6 7.4929 3.5434 -2.6685 19 7 6.5460 2.7786 -2.1677 20 14 9.2683 2.9627 -2.6531 21 1 9.9223 3.4031 -1.3948 22 1 9.3050 1.4805 -2.7377 23 1 9.9890 3.5428 -3.8148 24 6 4.7258 4.4479 -2.7048 25 6 3.5806 5.4559 -2.5004 26 1 2.6027 5.0051 -2.6702 27 6 2.6227 3.4060 1.2022 28 6 2.1633 2.1050 1.1952 29 6 1.8035 1.4277 2.4925 30 6 3.0004 0.6170 2.9936 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.2557 1.4960 -2.1254 37 1 3.0663 3.8179 -2.1374 38 1 3.5296 8.0867 -0.5676 39 1 5.1227 7.6001 -1.2238 40 1 4.1508 8.7098 -3.1227 41 1 2.5075 8.0890 -2.7513 42 1 5.8957 7.3088 -3.2264 43 1 5.6273 6.5500 -4.8173 44 1 6.7700 1.9133 -1.7909 45 1 4.4303 3.6856 -3.4256 46 1 4.9846 3.9818 -1.7541 47 1 2.7245 3.9390 2.1360 48 1 1.5387 2.1810 3.2344 49 1 0.9555 0.7620 2.3319 50 1 3.8485 1.2828 3.1543 51 1 2.7404 0.1275 3.9322 52 1 3.2653 -0.1363 2.2518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076648905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:27 Heat of formation + Delta-G solvation = 23.538845 kcal Electronic energy + Delta-G solvation = -31835.027805 eV Core-core repulsion = 27993.083708 eV Total energy + Delta-G solvation = -3841.944097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.17372 -40.46426 -39.28645 -36.39432 -35.86486 -34.31193 -33.87642 -32.89900 -31.08866 -30.67982 -29.62940 -28.17022 -26.62238 -25.68748 -24.88183 -23.63462 -22.70307 -22.46209 -21.81778 -21.12058 -20.26482 -18.83895 -18.13195 -17.36064 -17.25051 -16.63176 -16.50279 -16.33468 -15.75001 -15.63378 -15.17687 -14.78816 -14.68745 -14.61144 -14.46698 -14.34865 -14.16883 -14.08528 -13.83281 -13.58470 -13.33882 -13.21514 -13.05814 -13.00037 -12.85115 -12.69071 -12.52107 -12.27583 -12.13062 -12.11993 -12.01725 -11.92797 -11.81016 -11.67404 -11.55437 -11.43192 -11.23843 -10.84837 -10.73121 -9.85935 -9.63968 -9.42019 -8.83736 -7.79382 -5.19285 -0.07470 0.48436 1.41939 1.43911 1.51587 1.78890 2.01917 2.47012 2.88434 3.30718 3.37272 3.41297 3.65740 3.77045 3.83629 3.89782 3.93948 3.99355 4.15240 4.16440 4.27727 4.37142 4.42813 4.46415 4.48783 4.56077 4.56488 4.60437 4.65693 4.73311 4.79233 4.80834 4.86600 4.93567 5.02798 5.06405 5.09748 5.10973 5.12421 5.15848 5.23295 5.30440 5.34653 5.36274 5.38652 5.46870 5.50496 5.53201 5.54485 5.70980 5.82473 6.05628 6.28520 6.48908 7.07268 7.11829 7.81084 8.40416 9.22885 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009351 B = 0.004630 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.646036 B = 6045.824469 C = 7518.214876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.052 4.052 4 C -0.130 4.130 5 C -0.111 4.111 6 C -0.156 4.156 7 C 0.568 3.432 8 O -0.593 6.593 9 N -0.594 5.594 10 C 0.101 3.899 11 C -0.103 4.103 12 C -0.097 4.097 13 H 0.137 0.863 14 C 0.132 3.868 15 N -0.621 5.621 16 C -0.240 4.240 17 H 0.078 0.922 18 C -0.060 4.060 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.296 1.296 22 H -0.292 1.292 23 H -0.268 1.268 24 C 0.154 3.846 25 C 0.094 3.906 26 H 0.118 0.882 27 C -0.075 4.075 28 C -0.098 4.098 29 C -0.080 4.080 30 C -0.147 4.147 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.139 0.861 37 H 0.166 0.834 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.024 0.976 43 H 0.032 0.968 44 H 0.244 0.756 45 H 0.007 0.993 46 H 0.075 0.925 47 H 0.118 0.882 48 H 0.074 0.926 49 H 0.098 0.902 50 H 0.035 0.965 51 H 0.080 0.920 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 -1.389 1.170 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.053 4.053 4 C -0.148 4.148 5 C -0.129 4.129 6 C -0.159 4.159 7 C 0.360 3.640 8 O -0.476 6.476 9 N -0.324 5.324 10 C -0.021 4.021 11 C -0.140 4.140 12 C -0.116 4.116 13 H 0.155 0.845 14 C 0.007 3.993 15 N -0.347 5.347 16 C -0.369 4.369 17 H 0.096 0.904 18 C -0.253 4.253 19 N -0.584 5.584 20 Si 0.798 3.202 21 H -0.224 1.224 22 H -0.218 1.218 23 H -0.193 1.193 24 C 0.029 3.971 25 C -0.010 4.010 26 H 0.136 0.864 27 C -0.094 4.094 28 C -0.098 4.098 29 C -0.117 4.117 30 C -0.205 4.205 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.156 0.844 37 H 0.182 0.818 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.025 0.975 46 H 0.093 0.907 47 H 0.136 0.864 48 H 0.093 0.907 49 H 0.116 0.884 50 H 0.054 0.946 51 H 0.099 0.901 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.583 -1.263 1.814 15.739 hybrid contribution 1.837 -0.242 0.166 1.860 sum -13.746 -1.504 1.979 13.969 Atomic orbital electron populations 1.21731 0.93070 1.02824 1.02241 1.20721 0.97403 0.90649 1.03862 1.20279 0.95894 0.97148 0.91953 1.21227 1.00254 0.94476 0.98829 1.22996 0.94654 0.95965 0.99283 1.19790 1.06653 0.93722 0.95742 1.18371 0.76812 0.86584 0.82247 1.90645 1.55970 1.69131 1.31899 1.48197 1.66751 1.12078 1.05408 1.22351 0.99179 0.80835 0.99687 1.22813 1.03471 0.96874 0.90886 1.23181 0.95775 0.94192 0.98460 0.84487 1.21469 0.93193 0.87915 0.96687 1.44428 1.03299 1.16609 1.70349 1.19335 0.84157 1.00239 1.33217 0.90418 1.25503 1.01109 0.97459 1.01240 1.70057 1.31264 1.11254 1.45818 0.85216 0.80368 0.77000 0.77585 1.22386 1.21845 1.19276 1.21889 0.84878 0.90968 0.99393 1.23133 0.99592 0.96229 0.82055 0.86437 1.21112 0.96714 0.95049 0.96508 1.19883 1.00555 0.92966 0.96424 1.20611 0.99351 0.99451 0.92239 1.21772 0.97238 0.99678 1.01771 0.92814 0.90491 0.92231 0.90543 0.89591 0.84365 0.81775 0.90373 0.93909 0.87437 0.87822 0.95788 0.94994 0.94662 0.97525 0.90694 0.86357 0.90742 0.88413 0.94618 0.90097 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.72 71.98 0.70 -1.54 16 2 C -0.09 -1.81 5.38 29.85 0.16 -1.65 16 3 C -0.05 -1.48 5.14 -19.80 -0.10 -1.58 16 4 C -0.13 -4.16 9.66 22.23 0.21 -3.94 16 5 C -0.11 -4.13 7.10 22.53 0.16 -3.97 16 6 C -0.16 -6.31 5.66 -20.09 -0.11 -6.42 16 7 C 0.57 25.13 7.46 86.79 0.65 25.78 16 8 O -0.59 -29.32 16.65 -3.88 -0.06 -29.38 16 9 N -0.59 -23.19 3.01 -804.92 -2.43 -25.61 16 10 C 0.10 3.40 6.42 86.84 0.56 3.95 16 11 C -0.10 -2.40 6.30 31.97 0.20 -2.20 16 12 C -0.10 -2.79 4.25 -9.02 -0.04 -2.83 16 13 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 14 C 0.13 5.05 6.41 86.61 0.56 5.60 16 15 N -0.62 -31.06 3.38 -697.96 -2.36 -33.41 16 16 C -0.24 -13.45 10.25 84.03 0.86 -12.59 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.06 -3.39 5.48 84.86 0.47 -2.93 16 19 N -0.94 -55.34 10.16 21.65 0.22 -55.12 16 20 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.15 7.22 3.38 86.65 0.29 7.52 16 25 C 0.09 3.33 2.71 46.05 0.12 3.45 16 26 H 0.12 3.59 6.17 -2.38 -0.01 3.57 16 27 C -0.07 -2.73 9.22 22.53 0.21 -2.52 16 28 C -0.10 -2.90 5.13 -19.90 -0.10 -3.01 16 29 C -0.08 -1.74 5.38 29.85 0.16 -1.58 16 30 C -0.15 -3.19 9.72 71.98 0.70 -2.49 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.91 6.79 -2.39 -0.02 0.90 16 34 H 0.08 1.51 8.05 -2.39 -0.02 1.49 16 35 H 0.09 1.58 5.59 -2.39 -0.01 1.56 16 36 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.17 6.13 1.74 -9.39 -0.02 6.11 16 38 H 0.08 2.49 8.09 -2.39 -0.02 2.47 16 39 H 0.04 1.65 7.49 -2.39 -0.02 1.64 16 40 H 0.11 2.07 7.96 -2.38 -0.02 2.05 16 41 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.02 0.93 6.78 -2.39 -0.02 0.92 16 43 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.01 0.35 7.87 -2.39 -0.02 0.33 16 46 H 0.08 4.12 4.39 -2.39 -0.01 4.11 16 47 H 0.12 4.39 7.66 -2.91 -0.02 4.37 16 48 H 0.07 1.55 8.05 -2.39 -0.02 1.54 16 49 H 0.10 1.67 5.60 -2.39 -0.01 1.65 16 50 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 51 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 52 H 0.06 1.23 6.79 -2.39 -0.02 1.21 16 Total: -1.00 -74.87 389.04 3.97 -70.90 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.92 Total: 26.88 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 5.65 Total: -2.94 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -4.56 Total: -114.14 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.06 Total: -29.38 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -74.87 3.97 -70.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076648905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.443 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds