Wall clock time and date at job start Wed Apr 1 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 120.00069 * 2 1 4 4 C 1.38234 * 119.99993 * 180.24997 * 3 2 1 5 5 C 1.38239 * 119.99717 * 359.78917 * 4 3 2 6 6 C 1.38237 * 120.00188 * 359.95810 * 5 4 3 7 7 C 1.50700 * 120.00057 * 179.97438 * 6 5 4 8 8 C 1.38231 * 119.99753 * 0.02562 * 6 5 4 9 9 C 1.50700 * 119.99819 * 179.97438 * 8 6 5 10 10 C 1.50711 * 109.46416 * 90.00682 * 9 8 6 11 11 O 1.21276 * 120.00251 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99636 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99863 * 180.02562 * 12 10 9 14 14 H 1.09002 * 112.88687 * 25.32963 * 13 12 10 15 15 C 1.53950 * 113.65970 * 253.98734 * 13 12 10 16 16 C 1.53954 * 87.29307 * 270.16789 * 15 13 12 17 17 H 1.08999 * 113.66372 * 220.79322 * 16 15 13 18 18 N 1.46497 * 113.66175 * 89.83246 * 16 15 13 19 19 C 1.36939 * 120.00391 * 104.50649 * 18 16 15 20 20 H 1.07997 * 119.99329 * 359.97438 * 19 18 16 21 21 C 1.38805 * 120.00343 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00252 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99998 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47082 * 90.00190 * 23 21 19 25 25 H 1.48501 * 109.46760 * 210.00117 * 23 21 19 26 26 H 1.48495 * 109.46851 * 330.00251 * 23 21 19 27 27 C 1.52908 * 113.74717 * 156.75621 * 13 12 10 28 28 C 1.52913 * 121.14282 * 323.86373 * 27 13 12 29 29 C 1.53952 * 86.78076 * 209.37547 * 28 27 13 30 30 C 1.52903 * 121.13961 * 215.29797 * 27 13 12 31 31 H 1.08998 * 109.46856 * 270.23824 * 1 2 3 32 32 H 1.09005 * 109.47127 * 30.23496 * 1 2 3 33 33 H 1.08996 * 109.47173 * 150.23145 * 1 2 3 34 34 H 1.07993 * 120.00477 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.00336 * 179.76727 * 4 3 2 36 36 H 1.08007 * 119.99715 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.46821 * 270.02348 * 7 6 5 38 38 H 1.09005 * 109.47154 * 30.02106 * 7 6 5 39 39 H 1.08993 * 109.47076 * 150.01713 * 7 6 5 40 40 H 1.09001 * 109.47313 * 330.01123 * 9 8 6 41 41 H 1.09001 * 109.47494 * 210.00121 * 9 8 6 42 42 H 0.96999 * 120.00088 * 359.97438 * 12 10 9 43 43 H 1.08998 * 113.58557 * 24.76836 * 15 13 12 44 44 H 1.08998 * 113.57793 * 155.57035 * 15 13 12 45 45 H 0.97007 * 120.00201 * 284.50068 * 18 16 15 46 46 H 0.96999 * 120.00289 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.66060 * 323.84600 * 28 27 13 48 48 H 1.08992 * 113.66004 * 94.90121 * 28 27 13 49 49 H 1.08997 * 113.58088 * 270.13152 * 29 28 27 50 50 H 1.09003 * 113.57703 * 139.33906 * 29 28 27 51 51 H 1.09001 * 113.66279 * 265.10113 * 30 27 13 52 52 H 1.08997 * 113.66431 * 36.05792 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2716 -0.0001 -0.0060 6 6 3.5804 -1.1973 -0.0008 7 6 4.3339 -2.5024 -0.0022 8 6 2.1981 -1.1972 0.0048 9 6 1.4446 -2.5023 0.0100 10 6 1.1991 -2.9348 1.4327 11 8 1.5964 -2.2504 2.3517 12 7 0.5379 -4.0821 1.6836 13 6 0.2987 -4.5023 3.0665 14 1 0.2859 -3.6673 3.7670 15 6 1.1883 -5.6745 3.5187 16 6 0.0829 -6.6156 3.0063 17 1 -0.1024 -7.4689 3.6587 18 7 0.2402 -6.9968 1.6005 19 6 0.6934 -8.2478 1.2769 20 1 0.9354 -8.9532 2.0581 21 6 0.8430 -8.6089 -0.0550 22 7 1.2791 -9.8111 -0.3661 23 14 0.4252 -7.3884 -1.4062 24 1 1.6321 -6.5921 -1.7445 25 1 -0.0370 -8.1230 -2.6111 26 1 -0.6517 -6.4799 -0.9369 27 6 -0.8875 -5.4541 3.2244 28 6 -2.1437 -5.3014 2.3660 29 6 -2.9206 -5.9067 3.5493 30 6 -1.7879 -5.3974 4.4589 31 1 -0.3633 0.0043 1.0277 32 1 -0.3634 0.8879 -0.5175 33 1 -0.3633 -0.8920 -0.5102 34 1 1.6583 2.1324 0.0004 35 1 4.1206 2.1324 -0.0090 36 1 5.3517 -0.0001 -0.0105 37 1 4.5109 -2.8185 -1.0302 38 1 5.2887 -2.3714 0.5072 39 1 3.7472 -3.2612 0.5154 40 1 2.0317 -3.2629 -0.5048 41 1 0.4901 -2.3728 -0.5002 42 1 0.2198 -4.6293 0.9485 43 1 2.1216 -5.7541 2.9612 44 1 1.3341 -5.7202 4.5979 45 1 0.0231 -6.3631 0.8989 46 1 1.3840 -10.0633 -1.2968 47 1 -2.4059 -4.2647 2.1549 48 1 -2.1439 -5.9297 1.4754 49 1 -2.9947 -6.9935 3.5121 50 1 -3.8796 -5.4227 3.7345 51 1 -1.5039 -6.1023 5.2403 52 1 -1.9488 -4.3879 4.8371 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078636576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:10 Heat of formation + Delta-G solvation = 40.791434 kcal Electronic energy + Delta-G solvation = -31101.307546 eV Core-core repulsion = 27260.111578 eV Total energy + Delta-G solvation = -3841.195968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.84938 -40.03886 -38.43891 -35.40709 -33.77897 -33.63891 -33.39261 -32.26566 -30.53674 -28.92696 -26.75079 -26.68733 -25.58175 -24.65730 -24.24799 -22.53786 -21.25960 -20.74040 -20.36417 -20.02044 -18.57836 -17.21763 -16.90794 -16.37080 -16.26290 -15.72816 -15.25711 -14.89014 -14.72788 -14.49350 -14.48179 -13.94061 -13.80711 -13.28759 -13.24189 -13.00024 -12.94678 -12.84555 -12.77512 -12.66455 -12.34115 -12.25220 -12.01885 -11.91429 -11.68053 -11.56540 -11.47387 -11.12145 -11.04107 -10.93973 -10.88480 -10.80246 -10.38556 -10.14532 -9.87990 -9.79742 -9.62252 -9.52597 -8.97753 -8.63727 -8.59688 -8.54705 -7.40842 -5.88954 -3.25799 1.31547 1.36548 2.80157 3.18012 3.21118 3.26998 3.33924 3.76289 4.44060 4.56273 4.56993 4.71956 4.80388 4.85236 4.88326 4.89974 5.00960 5.04292 5.04892 5.19593 5.24359 5.31458 5.35346 5.37933 5.49658 5.56235 5.57274 5.59893 5.62525 5.65059 5.77039 5.78448 5.85368 5.86886 5.88167 5.90779 6.06987 6.11031 6.13950 6.20242 6.23528 6.30463 6.45059 6.49068 6.50779 6.58056 6.65147 6.66156 6.79890 6.95026 7.00585 7.71632 7.87907 8.30260 8.42030 9.05953 9.77886 9.96172 11.29163 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.003946 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.721075 B = 7094.102728 C = 8492.961743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.064 4.064 7 C -0.121 4.121 8 C -0.061 4.061 9 C -0.116 4.116 10 C 0.519 3.481 11 O -0.535 6.535 12 N -0.704 5.704 13 C 0.137 3.863 14 H 0.093 0.907 15 C -0.183 4.183 16 C 0.197 3.803 17 H 0.073 0.927 18 N -0.724 5.724 19 C -0.246 4.246 20 H 0.094 0.906 21 C 0.009 3.991 22 N -0.928 5.928 23 Si 0.873 3.127 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.278 1.278 27 C -0.130 4.130 28 C -0.129 4.129 29 C -0.134 4.134 30 C -0.105 4.105 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.398 0.602 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.355 0.645 46 H 0.261 0.739 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.070 0.930 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 18.894 2.158 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.064 4.064 7 C -0.177 4.177 8 C -0.061 4.061 9 C -0.155 4.155 10 C 0.306 3.694 11 O -0.411 6.411 12 N -0.356 5.356 13 C 0.032 3.968 14 H 0.111 0.889 15 C -0.225 4.225 16 C 0.086 3.914 17 H 0.091 0.909 18 N -0.365 5.365 19 C -0.375 4.375 20 H 0.112 0.888 21 C -0.187 4.187 22 N -0.575 5.575 23 Si 0.702 3.298 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.205 1.205 27 C -0.132 4.132 28 C -0.167 4.167 29 C -0.171 4.171 30 C -0.143 4.143 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.234 0.766 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.190 0.810 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.080 0.920 51 H 0.089 0.911 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.896 19.097 2.777 19.391 hybrid contribution -0.287 0.531 -1.477 1.596 sum -2.183 19.628 1.300 19.792 Atomic orbital electron populations 1.20869 0.91522 1.02525 1.02576 1.19657 0.95796 0.92538 0.98836 1.20893 0.94246 0.97108 1.02406 1.21047 0.94270 0.97763 1.00258 1.20939 0.99558 0.91909 1.02117 1.19723 0.92952 0.95535 0.98168 1.20869 1.00114 0.94408 1.02320 1.18933 0.92765 0.93009 1.01415 1.20821 1.02511 0.96687 0.95510 1.20353 0.77619 0.80584 0.90891 1.90687 1.50212 1.53912 1.46298 1.45754 1.57778 1.23401 1.08621 1.21665 0.96209 0.95997 0.82923 0.88948 1.24225 1.00233 0.97473 1.00523 1.20814 0.90727 0.92921 0.86974 0.90914 1.42457 1.79327 1.14353 1.00342 1.19085 1.36226 0.89048 0.93164 0.88814 1.24645 1.01166 0.96242 0.96618 1.69675 1.51824 1.18498 1.17553 0.86747 0.78147 0.81534 0.83326 1.20706 1.21310 1.20451 1.23549 0.92698 0.98723 0.98278 1.22604 0.95605 1.00447 0.98037 1.22753 0.96727 1.01102 0.96515 1.22496 0.95234 1.01210 0.95357 0.90935 0.91591 0.91438 0.86343 0.86319 0.86238 0.90944 0.91331 0.91295 0.87749 0.87850 0.76572 0.90768 0.90119 0.81045 0.92884 0.90802 0.90751 0.89847 0.92040 0.91098 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.60 36.01 0.35 -0.89 16 2 C -0.07 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.13 -1.47 9.70 -39.59 -0.38 -1.86 16 4 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 5 C -0.13 -1.53 9.70 -39.58 -0.38 -1.91 16 6 C -0.06 -0.86 5.88 -104.62 -0.62 -1.47 16 7 C -0.12 -1.51 9.19 36.01 0.33 -1.18 16 8 C -0.06 -0.83 4.37 -104.62 -0.46 -1.29 16 9 C -0.12 -1.55 4.75 -29.03 -0.14 -1.69 16 10 C 0.52 8.24 7.42 -10.98 -0.08 8.16 16 11 O -0.53 -10.01 15.65 5.56 0.09 -9.92 16 12 N -0.70 -11.11 4.93 -53.37 -0.26 -11.37 16 13 C 0.14 2.16 4.10 -67.48 -0.28 1.88 16 14 H 0.09 1.48 7.50 -51.93 -0.39 1.09 16 15 C -0.18 -3.09 7.68 -25.75 -0.20 -3.28 16 16 C 0.20 3.57 4.35 -67.48 -0.29 3.27 16 17 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 18 N -0.72 -15.66 4.57 -52.99 -0.24 -15.90 16 19 C -0.25 -6.51 10.46 -15.06 -0.16 -6.67 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 22 N -0.93 -27.96 13.97 55.49 0.78 -27.19 16 23 Si 0.87 20.40 27.74 -169.99 -4.71 15.69 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 27 C -0.13 -1.93 0.77 -154.71 -0.12 -2.05 16 28 C -0.13 -1.84 7.22 -26.28 -0.19 -2.03 16 29 C -0.13 -1.68 8.08 -25.75 -0.21 -1.89 16 30 C -0.10 -1.29 7.84 -26.29 -0.21 -1.50 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.07 0.66 5.94 -51.93 -0.31 0.35 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.07 0.97 6.37 -51.93 -0.33 0.64 16 40 H 0.10 1.35 6.70 -51.93 -0.35 1.01 16 41 H 0.10 1.16 5.94 -51.93 -0.31 0.85 16 42 H 0.40 6.39 6.21 -40.82 -0.25 6.13 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.36 7.41 2.98 -40.82 -0.12 7.29 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 49 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 407.40 15.07 6.14 6.14 Total: -1.00 -31.30 407.40 -10.74 -42.03 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -8.38 Total: 17.90 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -4.14 Total: -17.38 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.27 Total: -54.46 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.71 Total: 15.69 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.30 -10.74 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078636576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.826 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds