Wall clock time and date at job start Wed Apr 1 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 120.00069 * 2 1 4 4 C 1.38234 * 119.99993 * 180.24997 * 3 2 1 5 5 C 1.38239 * 119.99717 * 359.78917 * 4 3 2 6 6 C 1.38237 * 120.00188 * 359.95810 * 5 4 3 7 7 C 1.50700 * 120.00057 * 179.97438 * 6 5 4 8 8 C 1.38231 * 119.99753 * 0.02562 * 6 5 4 9 9 C 1.50700 * 119.99819 * 179.97438 * 8 6 5 10 10 C 1.50711 * 109.46416 * 90.00682 * 9 8 6 11 11 O 1.21276 * 120.00251 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99636 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99863 * 180.02562 * 12 10 9 14 14 H 1.09002 * 112.88687 * 25.32963 * 13 12 10 15 15 C 1.53950 * 113.65970 * 253.98734 * 13 12 10 16 16 C 1.53954 * 87.29307 * 270.16789 * 15 13 12 17 17 H 1.08999 * 113.66372 * 220.79322 * 16 15 13 18 18 N 1.46497 * 113.66175 * 89.83246 * 16 15 13 19 19 C 1.36939 * 120.00391 * 104.50649 * 18 16 15 20 20 H 1.07997 * 119.99329 * 359.97438 * 19 18 16 21 21 C 1.38805 * 120.00343 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00252 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99998 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47082 * 90.00190 * 23 21 19 25 25 H 1.48501 * 109.46760 * 210.00117 * 23 21 19 26 26 H 1.48495 * 109.46851 * 330.00251 * 23 21 19 27 27 C 1.52908 * 113.74717 * 156.75621 * 13 12 10 28 28 C 1.52913 * 121.14282 * 323.86373 * 27 13 12 29 29 C 1.53952 * 86.78076 * 209.37547 * 28 27 13 30 30 C 1.52903 * 121.13961 * 215.29797 * 27 13 12 31 31 H 1.08998 * 109.46856 * 270.23824 * 1 2 3 32 32 H 1.09005 * 109.47127 * 30.23496 * 1 2 3 33 33 H 1.08996 * 109.47173 * 150.23145 * 1 2 3 34 34 H 1.07993 * 120.00477 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.00336 * 179.76727 * 4 3 2 36 36 H 1.08007 * 119.99715 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.46821 * 270.02348 * 7 6 5 38 38 H 1.09005 * 109.47154 * 30.02106 * 7 6 5 39 39 H 1.08993 * 109.47076 * 150.01713 * 7 6 5 40 40 H 1.09001 * 109.47313 * 330.01123 * 9 8 6 41 41 H 1.09001 * 109.47494 * 210.00121 * 9 8 6 42 42 H 0.96999 * 120.00088 * 359.97438 * 12 10 9 43 43 H 1.08998 * 113.58557 * 24.76836 * 15 13 12 44 44 H 1.08998 * 113.57793 * 155.57035 * 15 13 12 45 45 H 0.97007 * 120.00201 * 284.50068 * 18 16 15 46 46 H 0.96999 * 120.00289 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.66060 * 323.84600 * 28 27 13 48 48 H 1.08992 * 113.66004 * 94.90121 * 28 27 13 49 49 H 1.08997 * 113.58088 * 270.13152 * 29 28 27 50 50 H 1.09003 * 113.57703 * 139.33906 * 29 28 27 51 51 H 1.09001 * 113.66279 * 265.10113 * 30 27 13 52 52 H 1.08997 * 113.66431 * 36.05792 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2716 -0.0001 -0.0060 6 6 3.5804 -1.1973 -0.0008 7 6 4.3339 -2.5024 -0.0022 8 6 2.1981 -1.1972 0.0048 9 6 1.4446 -2.5023 0.0100 10 6 1.1991 -2.9348 1.4327 11 8 1.5964 -2.2504 2.3517 12 7 0.5379 -4.0821 1.6836 13 6 0.2987 -4.5023 3.0665 14 1 0.2859 -3.6673 3.7670 15 6 1.1883 -5.6745 3.5187 16 6 0.0829 -6.6156 3.0063 17 1 -0.1024 -7.4689 3.6587 18 7 0.2402 -6.9968 1.6005 19 6 0.6934 -8.2478 1.2769 20 1 0.9354 -8.9532 2.0581 21 6 0.8430 -8.6089 -0.0550 22 7 1.2791 -9.8111 -0.3661 23 14 0.4252 -7.3884 -1.4062 24 1 1.6321 -6.5921 -1.7445 25 1 -0.0370 -8.1230 -2.6111 26 1 -0.6517 -6.4799 -0.9369 27 6 -0.8875 -5.4541 3.2244 28 6 -2.1437 -5.3014 2.3660 29 6 -2.9206 -5.9067 3.5493 30 6 -1.7879 -5.3974 4.4589 31 1 -0.3633 0.0043 1.0277 32 1 -0.3634 0.8879 -0.5175 33 1 -0.3633 -0.8920 -0.5102 34 1 1.6583 2.1324 0.0004 35 1 4.1206 2.1324 -0.0090 36 1 5.3517 -0.0001 -0.0105 37 1 4.5109 -2.8185 -1.0302 38 1 5.2887 -2.3714 0.5072 39 1 3.7472 -3.2612 0.5154 40 1 2.0317 -3.2629 -0.5048 41 1 0.4901 -2.3728 -0.5002 42 1 0.2198 -4.6293 0.9485 43 1 2.1216 -5.7541 2.9612 44 1 1.3341 -5.7202 4.5979 45 1 0.0231 -6.3631 0.8989 46 1 1.3840 -10.0633 -1.2968 47 1 -2.4059 -4.2647 2.1549 48 1 -2.1439 -5.9297 1.4754 49 1 -2.9947 -6.9935 3.5121 50 1 -3.8796 -5.4227 3.7345 51 1 -1.5039 -6.1023 5.2403 52 1 -1.9488 -4.3879 4.8371 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078636576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:09 Heat of formation + Delta-G solvation = 24.227848 kcal Electronic energy + Delta-G solvation = -31102.025797 eV Core-core repulsion = 27260.111578 eV Total energy + Delta-G solvation = -3841.914219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.10592 -41.05196 -39.58431 -36.75212 -35.46214 -34.51355 -34.40454 -33.76387 -32.36740 -29.91133 -27.71581 -27.55312 -26.80745 -26.18421 -25.48908 -24.06797 -22.44891 -21.62425 -21.53935 -21.26590 -20.21306 -18.79692 -18.12870 -17.39267 -17.24059 -16.84231 -16.61545 -16.43702 -15.98357 -15.77440 -15.48249 -15.27662 -15.09280 -14.68671 -14.39866 -14.12486 -13.95022 -13.88433 -13.82394 -13.77750 -13.59153 -13.55946 -13.26497 -13.16161 -12.89618 -12.74559 -12.58636 -12.54751 -12.45236 -12.14450 -11.96747 -11.86130 -11.81768 -11.75612 -11.35105 -11.22349 -10.97217 -10.86618 -10.72978 -9.92829 -9.51680 -9.43623 -9.32276 -8.03406 -5.37926 0.40651 0.47384 1.29709 1.37044 1.44222 1.57421 2.09673 2.45552 2.82884 3.25695 3.27291 3.54728 3.60070 3.72277 3.83585 3.87201 3.93690 3.95523 4.00313 4.07292 4.10176 4.14154 4.16683 4.37582 4.40132 4.53143 4.56052 4.62494 4.67585 4.74051 4.75269 4.78676 4.80510 4.85413 4.90307 4.92751 4.95236 4.97717 5.07578 5.13153 5.15713 5.20620 5.24893 5.32605 5.53386 5.58490 5.58631 5.60283 5.63952 5.74022 5.78945 6.14435 6.20577 6.46838 7.04560 7.18077 7.79289 7.98152 9.17932 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.003946 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.721075 B = 7094.102728 C = 8492.961743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.118 4.118 5 C -0.139 4.139 6 C -0.086 4.086 7 C -0.118 4.118 8 C -0.083 4.083 9 C -0.113 4.113 10 C 0.522 3.478 11 O -0.565 6.565 12 N -0.704 5.704 13 C 0.142 3.858 14 H 0.096 0.904 15 C -0.179 4.179 16 C 0.180 3.820 17 H 0.061 0.939 18 N -0.723 5.723 19 C -0.231 4.231 20 H 0.057 0.943 21 C -0.059 4.059 22 N -0.982 5.982 23 Si 0.935 3.065 24 H -0.271 1.271 25 H -0.296 1.296 26 H -0.243 1.243 27 C -0.120 4.120 28 C -0.130 4.130 29 C -0.129 4.129 30 C -0.094 4.094 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.398 0.602 43 H 0.045 0.955 44 H 0.101 0.899 45 H 0.362 0.638 46 H 0.258 0.742 47 H 0.092 0.908 48 H 0.052 0.948 49 H 0.069 0.931 50 H 0.086 0.914 51 H 0.077 0.923 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 22.353 2.115 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.135 4.135 5 C -0.157 4.157 6 C -0.086 4.086 7 C -0.175 4.175 8 C -0.083 4.083 9 C -0.152 4.152 10 C 0.310 3.690 11 O -0.444 6.444 12 N -0.355 5.355 13 C 0.037 3.963 14 H 0.114 0.886 15 C -0.221 4.221 16 C 0.070 3.930 17 H 0.079 0.921 18 N -0.365 5.365 19 C -0.362 4.362 20 H 0.075 0.925 21 C -0.250 4.250 22 N -0.632 5.632 23 Si 0.762 3.238 24 H -0.196 1.196 25 H -0.222 1.222 26 H -0.168 1.168 27 C -0.122 4.122 28 C -0.167 4.167 29 C -0.166 4.166 30 C -0.132 4.132 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.233 0.767 43 H 0.064 0.936 44 H 0.119 0.881 45 H 0.197 0.803 46 H 0.067 0.933 47 H 0.111 0.889 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.095 0.905 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.440 22.598 2.778 23.026 hybrid contribution 0.252 -0.568 -1.336 1.473 sum -3.188 22.030 1.442 22.306 Atomic orbital electron populations 1.20892 0.90193 1.03850 1.02374 1.19991 0.97018 0.92579 0.98617 1.21264 0.94682 0.97763 1.01651 1.21423 0.94521 0.98548 0.99037 1.21223 1.00588 0.91862 1.01979 1.19945 0.93336 0.96198 0.99099 1.20844 1.00030 0.93846 1.02753 1.19097 0.93083 0.93485 1.02678 1.20847 1.03738 0.96819 0.93820 1.20762 0.76603 0.80012 0.91662 1.90664 1.51398 1.54813 1.47493 1.45798 1.57711 1.23403 1.08583 1.21623 0.95975 0.95607 0.83079 0.88607 1.24179 0.98567 0.97891 1.01430 1.21013 0.93152 0.93864 0.84941 0.92059 1.42309 1.79292 1.12747 1.02194 1.19004 1.34667 0.90157 0.92332 0.92466 1.25439 1.01968 0.98274 0.99333 1.69872 1.54313 1.21165 1.17814 0.85706 0.79226 0.79567 0.79329 1.19644 1.22235 1.16752 1.23399 0.92513 0.95568 1.00713 1.22654 0.95296 1.01268 0.97517 1.22717 0.97948 1.00449 0.95487 1.22548 0.93610 1.02691 0.94383 0.91751 0.89542 0.90905 0.84018 0.83678 0.84651 0.89927 0.90630 0.93428 0.87692 0.85600 0.76657 0.93572 0.88095 0.80298 0.93346 0.88924 0.92950 0.91197 0.89578 0.90454 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 9.60 71.24 0.68 -1.46 16 2 C -0.08 -1.91 5.88 -19.87 -0.12 -2.02 16 3 C -0.14 -2.78 9.70 22.27 0.22 -2.57 16 4 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 5 C -0.14 -3.12 9.70 22.27 0.22 -2.90 16 6 C -0.09 -2.24 5.88 -19.87 -0.12 -2.35 16 7 C -0.12 -2.95 9.19 71.24 0.65 -2.29 16 8 C -0.08 -2.18 4.37 -19.87 -0.09 -2.27 16 9 C -0.11 -2.88 4.75 29.11 0.14 -2.74 16 10 C 0.52 16.02 7.42 87.66 0.65 16.67 16 11 O -0.57 -20.77 15.65 -3.02 -0.05 -20.82 16 12 N -0.70 -21.28 4.93 -441.15 -2.18 -23.45 16 13 C 0.14 4.27 4.10 45.28 0.19 4.45 16 14 H 0.10 2.88 7.50 -2.39 -0.02 2.86 16 15 C -0.18 -6.01 7.68 31.23 0.24 -5.77 16 16 C 0.18 6.50 4.35 45.28 0.20 6.69 16 17 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 18 N -0.72 -31.43 4.57 -321.57 -1.47 -32.90 16 19 C -0.23 -12.62 10.46 84.03 0.88 -11.74 16 20 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 21 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 22 N -0.98 -61.42 13.97 21.65 0.30 -61.12 16 23 Si 0.94 42.16 27.74 68.60 1.90 44.06 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.24 -9.43 6.52 99.48 0.65 -8.78 16 27 C -0.12 -3.32 0.77 -52.31 -0.04 -3.36 16 28 C -0.13 -3.35 7.22 30.89 0.22 -3.13 16 29 C -0.13 -2.86 8.08 31.23 0.25 -2.61 16 30 C -0.09 -2.03 7.84 30.88 0.24 -1.78 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.19 8.09 -2.38 -0.02 1.17 16 33 H 0.07 1.22 5.94 -2.39 -0.01 1.21 16 34 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.70 8.09 -2.38 -0.02 1.68 16 39 H 0.05 1.36 6.37 -2.39 -0.02 1.35 16 40 H 0.10 2.63 6.70 -2.39 -0.02 2.62 16 41 H 0.13 2.54 5.94 -2.39 -0.01 2.53 16 42 H 0.40 12.08 6.21 -92.71 -0.58 11.50 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.10 2.93 8.14 -2.39 -0.02 2.92 16 45 H 0.36 14.74 2.98 -92.70 -0.28 14.46 16 46 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.05 1.60 7.51 -2.39 -0.02 1.58 16 49 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 50 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -70.50 407.40 3.64 -66.86 By element: Atomic # 1 Polarization: 51.50 SS G_CDS: 0.02 Total: 51.51 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 5.11 Total: -24.15 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -3.34 Total: -117.47 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.90 Total: 44.06 kcal Total: -70.50 3.64 -66.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078636576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.089 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds