Wall clock time and date at job start Wed Apr 1 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 120.00257 * 2 1 4 4 C 1.38233 * 120.00037 * 180.25732 * 3 2 1 5 5 C 1.38238 * 119.99747 * 359.50225 * 4 3 2 6 6 C 1.38234 * 120.00083 * 0.44989 * 5 4 3 7 7 C 1.50707 * 120.00179 * 179.82916 * 6 5 4 8 8 C 1.38235 * 119.99522 * 179.97438 * 2 1 3 9 9 C 1.50700 * 120.00273 * 359.97438 * 8 2 1 10 10 C 1.50696 * 109.47492 * 89.99296 * 9 8 2 11 11 O 1.21279 * 119.99979 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00017 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99832 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.88824 * 26.85189 * 13 12 10 15 15 C 1.53948 * 113.66605 * 255.50131 * 13 12 10 16 16 C 1.53958 * 87.29487 * 270.26426 * 15 13 12 17 17 H 1.09001 * 113.66146 * 89.73400 * 16 15 13 18 18 N 1.46497 * 113.66456 * 220.69843 * 16 15 13 19 19 C 1.36931 * 120.00357 * 255.49811 * 18 16 15 20 20 H 1.08007 * 119.99894 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00241 * 180.02562 * 19 18 16 22 22 N 1.31613 * 119.99856 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99977 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47275 * 59.99576 * 23 21 19 25 25 H 1.48496 * 109.47266 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46906 * 299.99752 * 23 21 19 27 27 C 1.52910 * 86.78112 * 335.26591 * 16 15 13 28 28 C 1.52904 * 121.13973 * 150.62508 * 27 16 15 29 29 C 1.53956 * 86.78557 * 100.80817 * 28 27 16 30 30 C 1.52910 * 121.13313 * 259.17913 * 27 16 15 31 31 H 1.09002 * 109.46776 * 89.99941 * 1 2 3 32 32 H 1.08993 * 109.47429 * 210.00613 * 1 2 3 33 33 H 1.08998 * 109.46961 * 330.00864 * 1 2 3 34 34 H 1.08002 * 119.99744 * 359.97115 * 3 2 1 35 35 H 1.07998 * 120.00395 * 179.72811 * 4 3 2 36 36 H 1.07999 * 119.99927 * 180.28388 * 5 4 3 37 37 H 1.08994 * 109.47170 * 269.98160 * 7 6 5 38 38 H 1.09005 * 109.46541 * 29.98305 * 7 6 5 39 39 H 1.09000 * 109.46675 * 149.97953 * 7 6 5 40 40 H 1.08999 * 109.46948 * 210.00264 * 9 8 2 41 41 H 1.09009 * 109.46815 * 329.99236 * 9 8 2 42 42 H 0.96995 * 119.99840 * 0.02562 * 12 10 9 43 43 H 1.09001 * 113.57787 * 24.86184 * 15 13 12 44 44 H 1.08996 * 113.57998 * 155.58346 * 15 13 12 45 45 H 0.97006 * 119.99594 * 75.48832 * 18 16 15 46 46 H 0.97003 * 120.00085 * 180.02562 * 22 21 19 47 47 H 1.08995 * 113.66649 * 215.28338 * 28 27 16 48 48 H 1.09009 * 113.65880 * 346.33775 * 28 27 16 49 49 H 1.08996 * 113.58249 * 270.13548 * 29 28 27 50 50 H 1.08998 * 113.57875 * 139.33836 * 29 28 27 51 51 H 1.09005 * 113.65913 * 13.66169 * 30 27 16 52 52 H 1.09003 * 113.66540 * 144.70900 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0054 5 6 4.2717 -0.0001 -0.0004 6 6 3.5805 -1.1973 0.0006 7 6 4.3339 -2.5025 0.0022 8 6 2.1981 -1.1972 0.0005 9 6 1.4445 -2.5023 0.0017 10 6 1.1926 -2.9382 -1.4186 11 8 1.5866 -2.2566 -2.3411 12 7 0.5304 -4.0862 -1.6638 13 6 0.2850 -4.5097 -3.0446 14 1 1.0286 -4.1272 -3.7439 15 6 -1.1672 -4.2946 -3.5082 16 6 -1.4676 -5.7102 -2.9828 17 1 -1.7775 -5.7325 -1.9380 18 7 -2.3516 -6.4862 -3.8560 19 6 -3.6630 -6.6742 -3.5100 20 1 -4.0457 -6.2507 -2.5930 21 6 -4.5005 -7.4100 -4.3371 22 7 -4.0342 -7.9265 -5.4543 23 14 -6.2894 -7.6670 -3.8647 24 1 -6.9653 -6.3498 -3.7499 25 1 -6.9646 -8.4813 -4.9069 26 1 -6.3603 -8.3750 -2.5612 27 6 0.0180 -6.0084 -3.1886 28 6 0.7480 -7.0291 -2.3150 29 6 0.5958 -8.0134 -3.4890 30 6 0.5065 -6.7847 -4.4121 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8898 0.5139 33 1 -0.3633 0.8901 0.5137 34 1 1.6582 2.1324 -0.0005 35 1 4.1206 2.1323 -0.0098 36 1 5.3517 -0.0002 0.0001 37 1 4.5156 -2.8183 -1.0250 38 1 5.2863 -2.3715 0.5160 39 1 3.7447 -3.2614 0.5170 40 1 2.0338 -3.2616 0.5159 41 1 0.4923 -2.3715 0.5160 42 1 0.2156 -4.6315 -0.9260 43 1 -1.6871 -3.5075 -2.9621 44 1 -1.2702 -4.1983 -4.5890 45 1 -2.0078 -6.8668 -4.6794 46 1 -4.6195 -8.4403 -6.0325 47 1 1.7824 -6.7610 -2.1002 48 1 0.1909 -7.3208 -1.4245 49 1 -0.3232 -8.5983 -3.4513 50 1 1.4809 -8.6256 -3.6623 51 1 -0.2436 -6.8809 -5.1972 52 1 1.4730 -6.4477 -4.7868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078636577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:13 Heat of formation + Delta-G solvation = 17.506615 kcal Electronic energy + Delta-G solvation = -30205.894994 eV Core-core repulsion = 26363.689321 eV Total energy + Delta-G solvation = -3842.205674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.95854 -40.98369 -39.53856 -36.34155 -35.72721 -34.45906 -34.34605 -33.65341 -31.74123 -29.75882 -27.60194 -27.50945 -26.68401 -26.37601 -25.48789 -23.92020 -22.60452 -21.57550 -21.52151 -20.98724 -19.59885 -18.77869 -18.03986 -17.37136 -17.16933 -16.88641 -16.62981 -16.34606 -15.77276 -15.69376 -15.45992 -15.25993 -15.04333 -14.47900 -14.15432 -14.09339 -13.91681 -13.81989 -13.78926 -13.49512 -13.47535 -13.30269 -13.18478 -13.13966 -12.85596 -12.73880 -12.49732 -12.46413 -12.32385 -12.19059 -11.91668 -11.85135 -11.74015 -11.68900 -11.26882 -11.18358 -10.88959 -10.84832 -10.65734 -9.87436 -9.47177 -9.39450 -8.94449 -7.92575 -5.19940 0.45357 0.51358 1.47732 1.49925 1.55836 1.70271 2.19618 2.57275 2.89117 3.38359 3.50301 3.68111 3.69613 3.78097 3.90969 3.95030 3.99776 4.03347 4.10047 4.14146 4.15134 4.20751 4.29044 4.39332 4.53990 4.60189 4.60426 4.66747 4.75428 4.76297 4.78675 4.83081 4.88617 4.89284 4.91380 5.00101 5.01818 5.05022 5.10611 5.14514 5.20429 5.29585 5.32891 5.37066 5.50460 5.60748 5.62591 5.65155 5.67637 5.72541 5.78765 6.19233 6.29374 6.65959 7.34988 7.36434 8.14080 8.36993 9.30455 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.002534 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.299754 B =11049.211899 C =12185.209025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.083 4.083 7 C -0.116 4.116 8 C -0.083 4.083 9 C -0.104 4.104 10 C 0.519 3.481 11 O -0.577 6.577 12 N -0.695 5.695 13 C 0.152 3.848 14 H 0.082 0.918 15 C -0.174 4.174 16 C 0.181 3.819 17 H 0.082 0.918 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.077 0.923 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.969 3.031 24 H -0.281 1.281 25 H -0.299 1.299 26 H -0.276 1.276 27 C -0.110 4.110 28 C -0.107 4.107 29 C -0.131 4.131 30 C -0.115 4.115 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.414 0.586 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.376 0.624 46 H 0.250 0.750 47 H 0.100 0.900 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.080 0.920 51 H 0.045 0.955 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.773 12.125 16.385 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.086 4.086 3 C -0.160 4.160 4 C -0.139 4.139 5 C -0.159 4.159 6 C -0.083 4.083 7 C -0.173 4.173 8 C -0.084 4.084 9 C -0.143 4.143 10 C 0.307 3.693 11 O -0.456 6.456 12 N -0.346 5.346 13 C 0.046 3.954 14 H 0.100 0.900 15 C -0.217 4.217 16 C 0.070 3.930 17 H 0.100 0.900 18 N -0.359 5.359 19 C -0.372 4.372 20 H 0.094 0.906 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.798 3.202 24 H -0.208 1.208 25 H -0.225 1.225 26 H -0.202 1.202 27 C -0.112 4.112 28 C -0.144 4.144 29 C -0.168 4.168 30 C -0.153 4.153 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.250 0.750 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.210 0.790 46 H 0.058 0.942 47 H 0.118 0.882 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.099 0.901 51 H 0.064 0.936 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.861 12.581 15.833 26.981 hybrid contribution -1.435 -0.410 -0.666 1.635 sum 16.425 12.171 15.168 25.455 Atomic orbital electron populations 1.20883 0.90686 1.03924 1.01925 1.19997 0.96701 0.93071 0.98807 1.21234 0.94858 0.97780 1.02168 1.21392 0.94365 0.98807 0.99373 1.21256 1.00604 0.92007 1.01988 1.20026 0.93205 0.96580 0.98539 1.20891 1.00496 0.93696 1.02186 1.19184 0.93258 0.93751 1.02202 1.20819 1.03777 0.96553 0.93151 1.20965 0.76457 0.80006 0.91871 1.90705 1.52463 1.54661 1.47773 1.45503 1.57476 1.23823 1.07770 1.21292 0.95771 0.94376 0.84004 0.90033 1.24131 0.96796 1.00355 1.00384 1.21553 0.87740 0.89541 0.94130 0.89999 1.42552 1.07194 1.61560 1.24632 1.19633 0.87668 1.25716 1.04216 0.90553 1.25502 1.02160 1.01528 0.97474 1.69803 1.36325 1.41388 1.14422 0.85281 0.80529 0.77444 0.76924 1.20766 1.22549 1.20201 1.23277 0.96413 0.92180 0.99355 1.22613 1.00622 0.94564 0.96609 1.22657 1.01368 0.96028 0.96768 1.22522 1.00611 0.96458 0.95700 0.92641 0.90266 0.90083 0.84917 0.84245 0.84565 0.92191 0.89979 0.90062 0.85116 0.85835 0.74952 0.92607 0.92003 0.78966 0.94161 0.88180 0.90883 0.92489 0.90143 0.93593 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.61 71.24 0.68 -1.48 16 2 C -0.09 -1.84 5.88 -19.87 -0.12 -1.96 16 3 C -0.14 -2.83 9.70 22.27 0.22 -2.61 16 4 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 5 C -0.14 -2.65 9.70 22.27 0.22 -2.43 16 6 C -0.08 -1.68 5.88 -19.86 -0.12 -1.80 16 7 C -0.12 -1.78 9.61 71.24 0.68 -1.10 16 8 C -0.08 -1.77 4.37 -19.87 -0.09 -1.85 16 9 C -0.10 -1.76 5.01 29.10 0.15 -1.62 16 10 C 0.52 12.70 7.82 87.66 0.69 13.38 16 11 O -0.58 -19.68 15.67 -3.03 -0.05 -19.73 16 12 N -0.69 -15.72 5.07 -441.15 -2.24 -17.96 16 13 C 0.15 4.44 4.08 45.28 0.18 4.63 16 14 H 0.08 2.65 7.54 -2.39 -0.02 2.63 16 15 C -0.17 -6.23 7.68 31.23 0.24 -5.99 16 16 C 0.18 6.70 4.27 45.29 0.19 6.89 16 17 H 0.08 2.90 8.12 -2.39 -0.02 2.88 16 18 N -0.72 -35.03 5.35 -321.55 -1.72 -36.75 16 19 C -0.24 -12.98 9.98 84.03 0.84 -12.14 16 20 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 22 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 23 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 C -0.11 -3.28 0.91 -52.31 -0.05 -3.33 16 28 C -0.11 -2.58 7.43 30.88 0.23 -2.35 16 29 C -0.13 -3.76 8.08 31.23 0.25 -3.51 16 30 C -0.11 -3.59 7.45 30.88 0.23 -3.36 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.21 5.95 -2.39 -0.01 1.20 16 33 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 34 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.08 0.95 8.09 -2.38 -0.02 0.93 16 39 H 0.08 0.97 5.95 -2.39 -0.01 0.95 16 40 H 0.13 1.47 5.95 -2.39 -0.01 1.46 16 41 H 0.12 1.60 5.95 -2.38 -0.01 1.59 16 42 H 0.41 7.09 8.54 -92.71 -0.79 6.30 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.38 19.82 5.87 -92.70 -0.54 19.28 16 46 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 47 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 48 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 49 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.05 1.75 6.43 -2.38 -0.02 1.73 16 52 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -71.50 413.10 3.02 -68.47 By element: Atomic # 1 Polarization: 43.54 SS G_CDS: -0.40 Total: 43.13 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 5.12 Total: -26.36 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -3.68 Total: -113.17 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.05 Total: -19.73 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.50 3.02 -68.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078636577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.978 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds