Wall clock time and date at job start Wed Apr 1 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50697 * 109.47453 * 2 1 4 4 C 1.38263 * 120.00151 * 265.25299 * 3 2 1 5 5 C 1.38210 * 120.00273 * 180.26905 * 4 3 2 6 6 C 1.38260 * 119.99662 * 359.75040 * 5 4 3 7 7 C 1.38217 * 120.00155 * 359.97438 * 6 5 4 8 8 C 1.38214 * 120.00355 * 84.99704 * 3 2 1 9 9 C 1.50702 * 119.99493 * 0.02562 * 8 3 2 10 10 C 1.50698 * 109.47114 * 84.72681 * 9 8 3 11 11 O 1.21276 * 120.00019 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99715 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.88504 * 23.65623 * 13 12 10 15 15 C 1.53949 * 113.74829 * 252.23166 * 13 12 10 16 16 C 1.53950 * 87.29535 * 270.25168 * 15 13 12 17 17 H 1.09008 * 113.74633 * 220.78601 * 16 15 13 18 18 N 1.46499 * 113.66341 * 89.73825 * 16 15 13 19 19 C 1.36939 * 119.99933 * 108.08949 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47173 * 60.00435 * 23 21 19 25 25 H 1.48497 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47132 * 300.00314 * 23 21 19 27 27 C 1.52909 * 86.78227 * 335.26395 * 16 15 13 28 28 C 1.52907 * 121.14177 * 259.18037 * 27 16 15 29 29 C 1.53951 * 86.78403 * 209.38090 * 28 27 16 30 30 C 1.52906 * 121.13749 * 150.61521 * 27 16 15 31 31 H 1.09003 * 109.47750 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47443 * 300.00618 * 1 2 3 33 33 H 1.09005 * 109.47131 * 60.00036 * 1 2 3 34 34 H 1.09007 * 109.47101 * 240.00016 * 2 1 3 35 35 H 1.09005 * 109.47131 * 119.99964 * 2 1 3 36 36 H 1.08002 * 120.00009 * 0.04470 * 4 3 2 37 37 H 1.07997 * 120.00476 * 179.76638 * 5 4 3 38 38 H 1.07999 * 119.99793 * 179.97438 * 6 5 4 39 39 H 1.07994 * 119.99951 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.47198 * 324.72452 * 9 8 3 41 41 H 1.08998 * 109.46889 * 204.72871 * 9 8 3 42 42 H 0.96997 * 119.99812 * 0.02562 * 12 10 9 43 43 H 1.09002 * 113.58121 * 155.64862 * 15 13 12 44 44 H 1.08996 * 113.57817 * 24.85073 * 15 13 12 45 45 H 0.97001 * 119.99790 * 287.80923 * 18 16 15 46 46 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 47 47 H 1.08997 * 113.66251 * 323.85149 * 28 27 16 48 48 H 1.09002 * 113.66158 * 94.90664 * 28 27 16 49 49 H 1.09004 * 113.57480 * 270.12852 * 29 28 27 50 50 H 1.09001 * 113.64943 * 139.34808 * 29 28 27 51 51 H 1.09002 * 113.66647 * 265.09510 * 30 27 16 52 52 H 1.09003 * 113.66258 * 36.05869 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3562 2.0395 -1.1933 5 6 2.8223 3.3407 -1.1928 6 6 2.9597 4.0253 0.0005 7 6 2.6305 3.4087 1.1929 8 6 2.1643 2.1072 1.1924 9 6 1.8063 1.4345 2.4925 10 6 2.9837 0.6324 2.9839 11 8 4.0120 0.6088 2.3414 12 7 2.8938 -0.0589 4.1375 13 6 4.0381 -0.8391 4.6150 14 1 4.9892 -0.4818 4.2200 15 6 3.8480 -2.3613 4.4853 16 6 3.2342 -2.3314 5.8968 17 1 3.5420 -3.1657 6.5272 18 7 1.7850 -2.1167 5.9033 19 6 0.9418 -3.1463 6.2260 20 1 1.3450 -4.1178 6.4714 21 6 -0.4311 -2.9414 6.2379 22 7 -0.9223 -1.7576 5.9384 23 14 -1.5813 -4.3461 6.6774 24 1 -1.2780 -4.8231 8.0506 25 1 -2.9872 -3.8721 6.6168 26 1 -1.3930 -5.4601 5.7135 27 6 4.0446 -1.0556 6.1287 28 6 5.3540 -1.0830 6.9178 29 6 5.0346 0.3653 7.3307 30 6 3.5521 0.0312 7.0849 31 1 -0.3635 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 2.2485 1.5049 -2.1255 37 1 3.0789 3.8227 -2.1246 38 1 3.3243 5.0419 0.0009 39 1 2.7375 3.9436 2.1249 40 1 0.9550 0.7719 2.3365 41 1 1.5472 2.1907 3.2335 42 1 2.0712 -0.0403 4.6512 43 1 4.7855 -2.9146 4.4292 44 1 3.1398 -2.6476 3.7079 45 1 1.4230 -1.2442 5.6830 46 1 -1.8817 -1.6146 5.9464 47 1 5.3484 -1.7865 7.7503 48 1 6.2409 -1.1737 6.2907 49 1 5.4330 1.1123 6.6440 50 1 5.2654 0.5837 8.3734 51 1 2.9995 0.8307 6.5913 52 1 3.0386 -0.3591 7.9636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078659029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:46 Heat of formation + Delta-G solvation = 33.965390 kcal Electronic energy + Delta-G solvation = -30887.303890 eV Core-core repulsion = 27045.811922 eV Total energy + Delta-G solvation = -3841.491968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.69096 -39.82063 -38.25524 -35.27603 -34.22549 -33.60843 -32.63129 -32.04858 -29.86952 -29.42091 -27.58536 -25.46241 -24.59042 -24.07445 -23.75359 -22.91019 -21.86409 -20.65530 -20.15140 -19.83990 -18.21635 -17.17967 -16.59623 -16.35222 -16.02391 -15.58432 -15.25403 -14.99840 -14.61736 -14.53084 -14.20864 -13.86915 -13.69519 -13.43508 -13.17995 -13.02255 -12.97275 -12.74205 -12.51367 -12.22797 -12.04601 -11.96374 -11.70398 -11.66846 -11.53398 -11.40398 -11.20576 -10.96148 -10.88858 -10.72270 -10.65258 -10.59888 -10.27729 -10.09261 -9.83948 -9.76274 -9.50583 -9.33163 -8.88971 -8.71844 -8.48965 -8.48730 -7.06930 -5.89196 -3.17149 1.41222 1.47946 2.96523 3.38091 3.41912 3.43351 3.45592 3.90704 4.48557 4.72656 4.76603 4.81140 4.95384 4.97748 4.99859 5.02423 5.16513 5.19610 5.21565 5.31354 5.35113 5.41699 5.47971 5.52343 5.59247 5.63017 5.69692 5.72066 5.86650 5.88938 5.94505 5.97992 6.02443 6.07119 6.09613 6.10227 6.13694 6.20876 6.27818 6.34609 6.35756 6.42460 6.54754 6.55298 6.61951 6.70273 6.75011 6.76471 6.96353 7.08291 7.12327 7.63003 7.93758 8.30651 8.60133 9.41426 9.96461 10.30452 11.33494 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.003775 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.652343 B = 7415.268824 C = 9427.594285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.060 4.060 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.128 4.128 7 C -0.106 4.106 8 C -0.055 4.055 9 C -0.111 4.111 10 C 0.520 3.480 11 O -0.543 6.543 12 N -0.700 5.700 13 C 0.152 3.848 14 H 0.090 0.910 15 C -0.186 4.186 16 C 0.180 3.820 17 H 0.065 0.935 18 N -0.699 5.699 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.133 4.133 28 C -0.104 4.104 29 C -0.141 4.141 30 C -0.114 4.114 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.408 0.592 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.379 0.621 46 H 0.257 0.743 47 H 0.085 0.915 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.688 9.046 -7.657 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.060 4.060 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.146 4.146 7 C -0.124 4.124 8 C -0.055 4.055 9 C -0.151 4.151 10 C 0.306 3.694 11 O -0.421 6.421 12 N -0.352 5.352 13 C 0.047 3.953 14 H 0.108 0.892 15 C -0.228 4.228 16 C 0.068 3.932 17 H 0.083 0.917 18 N -0.339 5.339 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.136 4.136 28 C -0.142 4.142 29 C -0.179 4.179 30 C -0.152 4.152 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.246 0.754 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.215 0.785 46 H 0.067 0.933 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.261 8.870 -8.051 14.552 hybrid contribution -1.190 -0.447 0.361 1.321 sum 7.072 8.423 -7.690 13.420 Atomic orbital electron populations 1.21765 0.94491 1.02155 1.02030 1.20578 0.96166 0.92686 1.03212 1.19713 0.97914 0.95804 0.92566 1.20958 1.00383 0.95195 0.97287 1.21051 1.00198 0.94890 0.97863 1.21017 1.01158 0.99804 0.92590 1.20965 0.98763 0.94552 0.98097 1.19152 0.99267 0.93873 0.93240 1.20777 0.98184 1.00353 0.95764 1.20377 0.89085 0.79298 0.80650 1.90676 1.31206 1.64021 1.56161 1.45774 1.17059 1.48543 1.23830 1.21385 0.89346 0.92066 0.92526 0.89226 1.24284 1.01072 0.94853 1.02583 1.21040 0.84981 0.93947 0.93253 0.91710 1.42078 0.98437 1.11976 1.81369 1.19238 0.87651 0.91389 1.39000 0.90997 1.24701 0.96713 0.96867 1.02227 1.69607 1.12221 1.21166 1.55178 0.86255 0.80101 0.81473 0.78270 1.21251 1.21679 1.21255 1.23459 0.97946 0.98763 0.93392 1.22479 0.95645 0.97004 0.99103 1.22857 0.97628 0.96754 1.00657 1.22493 0.95329 0.97757 0.99621 0.92071 0.92212 0.92772 0.91206 0.90705 0.86366 0.86466 0.86401 0.86322 0.87261 0.88109 0.75415 0.90578 0.91033 0.78545 0.93334 0.89695 0.91717 0.90844 0.91980 0.92066 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.72 37.15 0.36 -1.42 16 2 C -0.09 -1.19 5.38 -27.89 -0.15 -1.34 16 3 C -0.06 -0.83 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.49 9.68 -39.58 -0.38 -1.87 16 5 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 6 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 7 C -0.11 -1.37 9.68 -39.58 -0.38 -1.76 16 8 C -0.05 -0.78 4.37 -104.63 -0.46 -1.24 16 9 C -0.11 -1.57 5.16 -29.03 -0.15 -1.72 16 10 C 0.52 8.72 7.01 -10.98 -0.08 8.64 16 11 O -0.54 -10.62 15.63 5.56 0.09 -10.53 16 12 N -0.70 -11.76 4.69 -53.37 -0.25 -12.01 16 13 C 0.15 2.55 4.12 -67.48 -0.28 2.27 16 14 H 0.09 1.54 7.46 -51.93 -0.39 1.16 16 15 C -0.19 -3.29 7.69 -25.75 -0.20 -3.48 16 16 C 0.18 3.41 4.36 -67.48 -0.29 3.11 16 17 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 18 N -0.70 -15.97 4.98 -52.99 -0.26 -16.24 16 19 C -0.24 -6.29 9.97 -15.06 -0.15 -6.44 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -25.93 13.06 55.49 0.72 -25.20 16 23 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C -0.13 -2.10 0.78 -154.71 -0.12 -2.23 16 28 C -0.10 -1.38 7.84 -26.28 -0.21 -1.59 16 29 C -0.14 -1.83 8.08 -25.75 -0.21 -2.04 16 30 C -0.11 -1.77 7.27 -26.29 -0.19 -1.96 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.75 6.80 -51.93 -0.35 0.39 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.85 8.05 -51.93 -0.42 0.44 16 35 H 0.07 1.15 6.40 -51.93 -0.33 0.82 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.11 1.54 5.64 -51.93 -0.29 1.24 16 41 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16 42 H 0.41 7.19 5.94 -40.82 -0.24 6.95 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.38 8.85 5.34 -40.82 -0.22 8.64 16 46 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.06 0.96 7.58 -51.93 -0.39 0.57 16 52 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 412.09 15.07 6.21 6.21 Total: -1.00 -29.57 412.09 -11.35 -40.92 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -8.52 Total: 18.91 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -4.31 Total: -18.45 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.21 Total: -53.45 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -29.57 -11.35 -40.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.884 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds