Wall clock time and date at job start Wed Apr 1 2020 03:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50697 * 109.47453 * 2 1 4 4 C 1.38263 * 120.00151 * 265.25299 * 3 2 1 5 5 C 1.38210 * 120.00273 * 180.26905 * 4 3 2 6 6 C 1.38260 * 119.99662 * 359.75040 * 5 4 3 7 7 C 1.38217 * 120.00155 * 359.97438 * 6 5 4 8 8 C 1.38214 * 120.00355 * 84.99704 * 3 2 1 9 9 C 1.50702 * 119.99493 * 0.02562 * 8 3 2 10 10 C 1.50698 * 109.47114 * 84.72681 * 9 8 3 11 11 O 1.21276 * 120.00019 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99715 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.88504 * 23.65623 * 13 12 10 15 15 C 1.53949 * 113.74829 * 252.23166 * 13 12 10 16 16 C 1.53950 * 87.29535 * 270.25168 * 15 13 12 17 17 H 1.09008 * 113.74633 * 220.78601 * 16 15 13 18 18 N 1.46499 * 113.66341 * 89.73825 * 16 15 13 19 19 C 1.36939 * 119.99933 * 108.08949 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47173 * 60.00435 * 23 21 19 25 25 H 1.48497 * 109.47172 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47132 * 300.00314 * 23 21 19 27 27 C 1.52909 * 86.78227 * 335.26395 * 16 15 13 28 28 C 1.52907 * 121.14177 * 259.18037 * 27 16 15 29 29 C 1.53951 * 86.78403 * 209.38090 * 28 27 16 30 30 C 1.52906 * 121.13749 * 150.61521 * 27 16 15 31 31 H 1.09003 * 109.47750 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47443 * 300.00618 * 1 2 3 33 33 H 1.09005 * 109.47131 * 60.00036 * 1 2 3 34 34 H 1.09007 * 109.47101 * 240.00016 * 2 1 3 35 35 H 1.09005 * 109.47131 * 119.99964 * 2 1 3 36 36 H 1.08002 * 120.00009 * 0.04470 * 4 3 2 37 37 H 1.07997 * 120.00476 * 179.76638 * 5 4 3 38 38 H 1.07999 * 119.99793 * 179.97438 * 6 5 4 39 39 H 1.07994 * 119.99951 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.47198 * 324.72452 * 9 8 3 41 41 H 1.08998 * 109.46889 * 204.72871 * 9 8 3 42 42 H 0.96997 * 119.99812 * 0.02562 * 12 10 9 43 43 H 1.09002 * 113.58121 * 155.64862 * 15 13 12 44 44 H 1.08996 * 113.57817 * 24.85073 * 15 13 12 45 45 H 0.97001 * 119.99790 * 287.80923 * 18 16 15 46 46 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 47 47 H 1.08997 * 113.66251 * 323.85149 * 28 27 16 48 48 H 1.09002 * 113.66158 * 94.90664 * 28 27 16 49 49 H 1.09004 * 113.57480 * 270.12852 * 29 28 27 50 50 H 1.09001 * 113.64943 * 139.34808 * 29 28 27 51 51 H 1.09002 * 113.66647 * 265.09510 * 30 27 16 52 52 H 1.09003 * 113.66258 * 36.05869 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3562 2.0395 -1.1933 5 6 2.8223 3.3407 -1.1928 6 6 2.9597 4.0253 0.0005 7 6 2.6305 3.4087 1.1929 8 6 2.1643 2.1072 1.1924 9 6 1.8063 1.4345 2.4925 10 6 2.9837 0.6324 2.9839 11 8 4.0120 0.6088 2.3414 12 7 2.8938 -0.0589 4.1375 13 6 4.0381 -0.8391 4.6150 14 1 4.9892 -0.4818 4.2200 15 6 3.8480 -2.3613 4.4853 16 6 3.2342 -2.3314 5.8968 17 1 3.5420 -3.1657 6.5272 18 7 1.7850 -2.1167 5.9033 19 6 0.9418 -3.1463 6.2260 20 1 1.3450 -4.1178 6.4714 21 6 -0.4311 -2.9414 6.2379 22 7 -0.9223 -1.7576 5.9384 23 14 -1.5813 -4.3461 6.6774 24 1 -1.2780 -4.8231 8.0506 25 1 -2.9872 -3.8721 6.6168 26 1 -1.3930 -5.4601 5.7135 27 6 4.0446 -1.0556 6.1287 28 6 5.3540 -1.0830 6.9178 29 6 5.0346 0.3653 7.3307 30 6 3.5521 0.0312 7.0849 31 1 -0.3635 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 2.2485 1.5049 -2.1255 37 1 3.0789 3.8227 -2.1246 38 1 3.3243 5.0419 0.0009 39 1 2.7375 3.9436 2.1249 40 1 0.9550 0.7719 2.3365 41 1 1.5472 2.1907 3.2335 42 1 2.0712 -0.0403 4.6512 43 1 4.7855 -2.9146 4.4292 44 1 3.1398 -2.6476 3.7079 45 1 1.4230 -1.2442 5.6830 46 1 -1.8817 -1.6146 5.9464 47 1 5.3484 -1.7865 7.7503 48 1 6.2409 -1.1737 6.2907 49 1 5.4330 1.1123 6.6440 50 1 5.2654 0.5837 8.3734 51 1 2.9995 0.8307 6.5913 52 1 3.0386 -0.3591 7.9636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078659029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:44 Heat of formation + Delta-G solvation = 19.991583 kcal Electronic energy + Delta-G solvation = -30887.909840 eV Core-core repulsion = 27045.811922 eV Total energy + Delta-G solvation = -3842.097917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.03187 -40.91606 -39.48898 -36.68821 -35.31712 -35.21432 -33.97423 -33.32957 -31.66154 -30.39846 -28.68787 -26.80431 -26.15137 -25.36771 -24.83124 -24.38669 -22.94216 -21.82200 -21.42235 -21.09885 -19.71422 -18.87328 -17.96835 -17.35397 -17.14265 -16.83646 -16.71377 -16.26806 -15.94043 -15.88095 -15.60273 -15.33857 -14.81559 -14.73457 -14.55341 -14.34004 -13.96867 -13.93181 -13.85368 -13.44779 -13.21540 -13.18325 -12.99524 -12.86589 -12.83954 -12.71078 -12.67994 -12.53149 -12.20147 -12.18088 -11.95481 -11.81859 -11.71816 -11.57782 -11.31701 -11.16206 -10.88743 -10.79216 -10.63503 -9.88646 -9.67805 -9.47045 -8.95882 -7.93540 -5.19999 0.44284 0.52824 1.49689 1.50411 1.56247 1.61862 2.16600 2.57187 2.90552 3.38891 3.42325 3.66331 3.66696 3.79273 3.84225 3.93242 3.95977 4.01855 4.03648 4.08996 4.23106 4.30170 4.31982 4.33650 4.44448 4.51026 4.58361 4.63918 4.65976 4.68717 4.74943 4.80902 4.86123 4.95971 4.98791 5.01469 5.05102 5.10680 5.12097 5.13982 5.20326 5.22316 5.24221 5.34223 5.53602 5.55028 5.60134 5.63294 5.64246 5.70809 5.77736 6.15836 6.29864 6.55474 7.22956 7.37156 8.10428 8.35141 9.28983 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.003775 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.652343 B = 7415.268824 C = 9427.594285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.079 4.079 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.131 4.131 7 C -0.119 4.119 8 C -0.076 4.076 9 C -0.105 4.105 10 C 0.521 3.479 11 O -0.571 6.571 12 N -0.700 5.700 13 C 0.154 3.846 14 H 0.091 0.909 15 C -0.179 4.179 16 C 0.166 3.834 17 H 0.063 0.937 18 N -0.708 5.708 19 C -0.244 4.244 20 H 0.073 0.927 21 C -0.062 4.062 22 N -0.960 5.960 23 Si 0.965 3.035 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.284 1.284 27 C -0.124 4.124 28 C -0.096 4.096 29 C -0.127 4.127 30 C -0.121 4.121 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.403 0.597 43 H 0.100 0.900 44 H 0.042 0.958 45 H 0.375 0.625 46 H 0.252 0.748 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.053 0.947 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.068 9.915 -8.002 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.079 4.079 4 C -0.147 4.147 5 C -0.140 4.140 6 C -0.148 4.148 7 C -0.137 4.137 8 C -0.077 4.077 9 C -0.145 4.145 10 C 0.309 3.691 11 O -0.451 6.451 12 N -0.351 5.351 13 C 0.049 3.951 14 H 0.109 0.891 15 C -0.221 4.221 16 C 0.055 3.945 17 H 0.081 0.919 18 N -0.347 5.347 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.256 4.256 22 N -0.610 5.610 23 Si 0.795 3.205 24 H -0.207 1.207 25 H -0.222 1.222 26 H -0.210 1.210 27 C -0.126 4.126 28 C -0.134 4.134 29 C -0.164 4.164 30 C -0.158 4.158 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.241 0.759 43 H 0.118 0.882 44 H 0.061 0.939 45 H 0.209 0.791 46 H 0.061 0.939 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.099 0.901 51 H 0.072 0.928 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.680 9.723 -8.386 16.080 hybrid contribution -1.556 -0.728 0.428 1.770 sum 8.125 8.995 -7.958 14.500 Atomic orbital electron populations 1.21725 0.93744 1.02141 1.02342 1.20517 0.96827 0.92778 1.02157 1.19865 0.98856 0.95894 0.93316 1.21247 1.00110 0.95936 0.97409 1.21442 0.98968 0.94489 0.99085 1.21387 1.00317 1.00997 0.92145 1.21223 0.98834 0.94295 0.99392 1.19257 1.00640 0.94698 0.93058 1.20753 0.96707 1.00333 0.96686 1.20795 0.89369 0.78920 0.80045 1.90645 1.32504 1.65105 1.56833 1.45836 1.16886 1.48498 1.23894 1.21375 0.89264 0.91232 0.93272 0.89142 1.24217 1.01247 0.96094 1.00526 1.21246 0.83395 0.95784 0.94044 0.91913 1.42147 0.99946 1.11119 1.81485 1.19558 0.88334 0.92097 1.37605 0.90949 1.25354 0.98057 0.98849 1.03297 1.69735 1.11901 1.22602 1.56774 0.85348 0.78014 0.79084 0.78075 1.20690 1.22230 1.21045 1.23388 0.99231 0.96877 0.93089 1.22524 0.94449 0.97438 0.98939 1.22784 0.94912 0.96679 1.02010 1.22487 0.97162 0.97414 0.98779 0.92217 0.93095 0.91184 0.90327 0.93574 0.84595 0.83565 0.83774 0.85241 0.87802 0.86384 0.75938 0.88197 0.93931 0.79097 0.93945 0.88756 0.90044 0.90263 0.90117 0.92821 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.72 71.98 0.70 -2.81 16 2 C -0.09 -2.35 5.38 29.84 0.16 -2.19 16 3 C -0.08 -2.19 5.13 -19.87 -0.10 -2.29 16 4 C -0.13 -3.02 9.68 22.27 0.22 -2.81 16 5 C -0.12 -2.51 10.05 22.27 0.22 -2.28 16 6 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 7 C -0.12 -2.99 9.68 22.27 0.22 -2.77 16 8 C -0.08 -2.16 4.37 -19.87 -0.09 -2.25 16 9 C -0.11 -3.07 5.16 29.10 0.15 -2.92 16 10 C 0.52 17.93 7.01 87.66 0.61 18.55 16 11 O -0.57 -22.70 15.63 -3.02 -0.05 -22.75 16 12 N -0.70 -24.14 4.69 -441.15 -2.07 -26.21 16 13 C 0.15 5.13 4.12 45.28 0.19 5.32 16 14 H 0.09 3.04 7.46 -2.38 -0.02 3.02 16 15 C -0.18 -6.35 7.69 31.23 0.24 -6.11 16 16 C 0.17 6.28 4.36 45.28 0.20 6.48 16 17 H 0.06 2.38 8.10 -2.38 -0.02 2.36 16 18 N -0.71 -33.01 4.98 -321.55 -1.60 -34.62 16 19 C -0.24 -12.88 9.97 84.03 0.84 -12.04 16 20 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 21 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 22 N -0.96 -54.53 13.06 21.65 0.28 -54.24 16 23 Si 0.96 44.53 29.55 68.60 2.03 46.55 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 C -0.12 -3.80 0.78 -52.31 -0.04 -3.84 16 28 C -0.10 -2.28 7.84 30.88 0.24 -2.04 16 29 C -0.13 -2.96 8.08 31.23 0.25 -2.71 16 30 C -0.12 -3.64 7.27 30.88 0.22 -3.42 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.32 6.80 -2.39 -0.02 1.31 16 33 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.08 1.94 8.05 -2.38 -0.02 1.92 16 35 H 0.05 1.51 6.40 -2.38 -0.02 1.49 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.10 3.11 5.64 -2.39 -0.01 3.09 16 41 H 0.12 2.92 8.05 -2.39 -0.02 2.90 16 42 H 0.40 14.80 5.94 -92.71 -0.55 14.25 16 43 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.37 18.05 5.34 -92.71 -0.49 17.55 16 46 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 47 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 50 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.05 1.68 7.58 -2.39 -0.02 1.66 16 52 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -64.07 412.09 3.39 -60.68 By element: Atomic # 1 Polarization: 56.33 SS G_CDS: -0.13 Total: 56.21 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 4.92 Total: -25.62 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -3.39 Total: -115.07 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.07 3.39 -60.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.674 kcal (2) G-P(sol) polarization free energy of solvation -64.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds