Wall clock time and date at job start Wed Apr 1 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38254 * 120.00319 * 0.26336 * 5 4 3 7 7 C 1.38216 * 119.99725 * 0.02562 * 6 5 4 8 8 C 1.38209 * 120.00297 * 85.25502 * 3 2 1 9 9 C 1.50700 * 120.00250 * 0.04495 * 8 3 2 10 10 C 1.50693 * 109.47256 * 85.23148 * 9 8 3 11 11 O 1.21285 * 120.00321 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99899 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00008 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.88655 * 26.83894 * 13 12 10 15 15 C 1.53947 * 113.66011 * 255.49373 * 13 12 10 16 16 C 1.53948 * 87.29454 * 270.25933 * 15 13 12 17 17 H 1.09005 * 113.66014 * 89.73686 * 16 15 13 18 18 N 1.46499 * 113.66613 * 220.79242 * 16 15 13 19 19 C 1.36941 * 119.99975 * 255.49757 * 18 16 15 20 20 H 1.07994 * 120.00350 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99777 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00048 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47147 * 60.00173 * 23 21 19 25 25 H 1.48503 * 109.47418 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47381 * 300.00426 * 23 21 19 27 27 C 1.52902 * 86.78237 * 335.26597 * 16 15 13 28 28 C 1.52915 * 121.13671 * 150.62403 * 27 16 15 29 29 C 1.53951 * 86.78385 * 100.81247 * 28 27 16 30 30 C 1.52904 * 121.13497 * 259.17690 * 27 16 15 31 31 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 32 32 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 33 33 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 35 35 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 36 36 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 37 37 H 1.07999 * 119.99941 * 180.27784 * 5 4 3 38 38 H 1.07997 * 120.00486 * 179.97438 * 6 5 4 39 39 H 1.08002 * 119.99716 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47082 * 205.23660 * 9 8 3 41 41 H 1.09004 * 109.46635 * 325.23485 * 9 8 3 42 42 H 0.96996 * 120.00465 * 359.97438 * 12 10 9 43 43 H 1.08999 * 113.58475 * 24.86546 * 15 13 12 44 44 H 1.09006 * 113.58211 * 155.65838 * 15 13 12 45 45 H 0.97000 * 119.99767 * 75.49623 * 18 16 15 46 46 H 0.97001 * 119.99639 * 179.97438 * 22 21 19 47 47 H 1.08997 * 113.66176 * 215.28477 * 28 27 16 48 48 H 1.09001 * 113.65832 * 346.33996 * 28 27 16 49 49 H 1.09003 * 113.57712 * 270.13653 * 29 28 27 50 50 H 1.08997 * 113.64944 * 139.35277 * 29 28 27 51 51 H 1.09000 * 113.66043 * 13.65819 * 30 27 16 52 52 H 1.08998 * 113.66405 * 144.61897 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9481 4.0294 -0.0007 7 6 2.6249 3.4107 1.1922 8 6 2.1693 2.1054 1.1928 9 6 1.8174 1.4307 2.4936 10 6 3.0012 0.6383 2.9849 11 8 4.0298 0.6232 2.3424 12 7 2.9171 -0.0537 4.1384 13 6 4.0682 -0.8236 4.6164 14 1 5.0202 -0.4243 4.2663 15 6 3.9230 -2.3426 4.4129 16 6 3.2665 -2.3926 5.8045 17 1 2.1847 -2.2607 5.7828 18 7 3.6858 -3.5411 6.6116 19 6 2.8404 -4.6052 6.7794 20 1 1.8647 -4.5981 6.3165 21 6 3.2380 -5.6937 7.5438 22 7 4.4273 -5.7027 8.1075 23 14 2.0846 -7.1449 7.7734 24 1 1.7618 -7.7351 6.4494 25 1 2.7408 -8.1689 8.6255 26 1 0.8337 -6.6844 8.4281 27 6 4.0351 -1.1086 6.1183 28 6 3.4851 -0.0794 7.1066 29 6 4.4618 -0.6751 8.1367 30 6 5.3204 -1.1388 6.9459 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2578 1.5015 -2.1247 37 1 3.0691 3.8260 -2.1255 38 1 3.3042 5.0490 -0.0011 39 1 2.7281 3.9471 2.1240 40 1 1.5525 2.1854 3.2342 41 1 0.9713 0.7613 2.3383 42 1 2.0947 -0.0413 4.6526 43 1 3.2464 -2.6112 3.6016 44 1 4.8763 -2.8688 4.3613 45 1 4.5623 -3.5477 7.0270 46 1 4.7049 -6.4631 8.6419 47 1 3.7109 0.9518 6.8351 48 1 2.4359 -0.2326 7.3590 49 1 4.0383 -1.4965 8.7149 50 1 4.9497 0.0737 8.7607 51 1 5.7373 -2.1382 7.0702 52 1 6.0625 -0.4064 6.6284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078659030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:50 Heat of formation + Delta-G solvation = 31.413805 kcal Electronic energy + Delta-G solvation = -30110.956387 eV Core-core repulsion = 26269.353774 eV Total energy + Delta-G solvation = -3841.602613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.72765 -39.97923 -38.49298 -35.00752 -34.45823 -34.02359 -32.82696 -32.08075 -29.93730 -29.62048 -27.72936 -25.46502 -24.65874 -24.13281 -23.98955 -22.61734 -21.92951 -21.06911 -20.36677 -19.90376 -17.96787 -17.30649 -16.82057 -16.54990 -16.27475 -15.84532 -15.25681 -15.08083 -14.80042 -14.56897 -14.31550 -13.95918 -13.80259 -13.64762 -13.44660 -13.21078 -13.08519 -12.65777 -12.52555 -12.27568 -12.11068 -11.99962 -11.93836 -11.74049 -11.66209 -11.45933 -11.34298 -10.95814 -10.88427 -10.84131 -10.81920 -10.61127 -10.21296 -10.13849 -9.85482 -9.79952 -9.61947 -9.40193 -8.90824 -8.85470 -8.69659 -8.65641 -6.98194 -5.81055 -3.09533 1.21185 1.29150 2.71730 3.21507 3.40913 3.45892 3.46608 3.71421 4.46216 4.55451 4.59046 4.74169 4.78691 4.80941 4.91053 4.98561 5.02383 5.06517 5.10132 5.19320 5.22738 5.25632 5.27486 5.34672 5.42630 5.45092 5.48606 5.69094 5.72127 5.77898 5.84013 5.88123 5.94854 5.97273 5.99675 6.05448 6.08574 6.11104 6.19860 6.29613 6.35027 6.38097 6.42186 6.51878 6.54170 6.56977 6.67111 6.87323 6.88938 6.93527 7.07890 7.65172 7.66414 8.35135 8.37849 9.49269 10.06819 10.41585 11.41153 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.002572 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.346880 B =10882.948732 C =12138.959499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.108 4.108 10 C 0.515 3.485 11 O -0.533 6.533 12 N -0.705 5.705 13 C 0.131 3.869 14 H 0.093 0.907 15 C -0.174 4.174 16 C 0.192 3.808 17 H 0.074 0.926 18 N -0.709 5.709 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.119 4.119 28 C -0.126 4.126 29 C -0.131 4.131 30 C -0.111 4.111 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.399 0.601 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.387 0.613 46 H 0.256 0.744 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.089 0.911 50 H 0.056 0.944 51 H 0.079 0.921 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 19.349 -13.092 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.148 4.148 10 C 0.300 3.700 11 O -0.409 6.409 12 N -0.355 5.355 13 C 0.025 3.975 14 H 0.111 0.889 15 C -0.216 4.216 16 C 0.080 3.920 17 H 0.092 0.908 18 N -0.348 5.348 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.122 4.122 28 C -0.163 4.163 29 C -0.169 4.169 30 C -0.149 4.149 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.233 0.767 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.223 0.777 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.108 0.892 50 H 0.075 0.925 51 H 0.097 0.903 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.648 19.157 -13.508 24.111 hybrid contribution -0.599 -0.843 0.482 1.141 sum -6.247 18.314 -13.025 23.326 Atomic orbital electron populations 1.21770 0.94651 1.01969 1.02029 1.20584 0.95978 0.92796 1.03375 1.19687 0.98148 0.95754 0.92615 1.20980 1.00166 0.95179 0.97362 1.21088 0.99888 0.94805 0.97985 1.21044 1.00881 0.99913 0.92570 1.20963 0.98783 0.94453 0.98131 1.19104 0.99889 0.93938 0.93103 1.20765 0.97855 1.00210 0.95984 1.20412 0.89358 0.79399 0.80799 1.90724 1.31253 1.63029 1.55887 1.45631 1.16577 1.49627 1.23692 1.21689 0.89063 0.92252 0.94474 0.88943 1.24261 1.02401 0.93819 1.01148 1.21268 0.95519 0.85681 0.89551 0.90843 1.42394 1.18454 1.15753 1.58162 1.19220 0.97209 0.95337 1.25741 0.91270 1.24739 0.96945 0.98650 1.00375 1.69642 1.18985 1.31571 1.37719 0.86288 0.79938 0.82490 0.77568 1.21271 1.21705 1.21289 1.23521 0.99109 0.98193 0.91353 1.22644 0.99246 0.97503 0.96946 1.22743 0.97559 1.00509 0.96061 1.22457 0.94953 1.02048 0.95397 0.92528 0.92556 0.92131 0.90965 0.90814 0.86257 0.86326 0.86276 0.86296 0.88148 0.87768 0.76664 0.92413 0.89700 0.77690 0.93392 0.90964 0.91726 0.89198 0.92478 0.90274 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.72 37.16 0.36 -0.83 16 2 C -0.09 -0.91 5.38 -27.89 -0.15 -1.06 16 3 C -0.06 -0.69 5.13 -104.63 -0.54 -1.23 16 4 C -0.12 -1.22 9.68 -39.58 -0.38 -1.60 16 5 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 6 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 7 C -0.11 -1.11 9.68 -39.58 -0.38 -1.49 16 8 C -0.06 -0.67 4.37 -104.63 -0.46 -1.12 16 9 C -0.11 -1.05 5.16 -29.04 -0.15 -1.20 16 10 C 0.51 6.79 7.05 -10.99 -0.08 6.71 16 11 O -0.53 -9.27 15.68 5.55 0.09 -9.18 16 12 N -0.71 -8.84 5.07 -53.37 -0.27 -9.11 16 13 C 0.13 1.99 4.08 -67.48 -0.28 1.71 16 14 H 0.09 1.54 7.54 -51.93 -0.39 1.15 16 15 C -0.17 -3.09 7.68 -25.75 -0.20 -3.28 16 16 C 0.19 3.60 4.28 -67.49 -0.29 3.31 16 17 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 18 N -0.71 -16.87 5.35 -52.99 -0.28 -17.15 16 19 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.12 -1.86 0.91 -154.72 -0.14 -2.00 16 28 C -0.13 -1.72 7.43 -26.28 -0.20 -1.91 16 29 C -0.13 -1.99 8.08 -25.75 -0.21 -2.19 16 30 C -0.11 -1.75 7.45 -26.29 -0.20 -1.95 16 31 H 0.06 0.43 6.83 -51.93 -0.35 0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.07 0.86 6.41 -51.93 -0.33 0.52 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.10 0.73 8.05 -51.93 -0.42 0.32 16 41 H 0.10 0.85 5.64 -51.93 -0.29 0.56 16 42 H 0.40 4.12 8.54 -40.82 -0.35 3.77 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 45 H 0.39 9.79 5.86 -40.82 -0.24 9.55 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.08 1.45 6.42 -51.93 -0.33 1.11 16 52 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 414.82 15.07 6.25 6.25 Total: -1.00 -31.81 414.82 -11.43 -43.24 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -8.59 Total: 14.09 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -4.32 Total: -18.39 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.17 Total: -52.94 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.81 -11.43 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.657 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds