Wall clock time and date at job start Wed Apr 1 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38254 * 120.00319 * 0.26336 * 5 4 3 7 7 C 1.38216 * 119.99725 * 0.02562 * 6 5 4 8 8 C 1.38209 * 120.00297 * 85.25502 * 3 2 1 9 9 C 1.50700 * 120.00250 * 0.04495 * 8 3 2 10 10 C 1.50693 * 109.47256 * 85.23148 * 9 8 3 11 11 O 1.21285 * 120.00321 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99899 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00008 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.88655 * 26.83894 * 13 12 10 15 15 C 1.53947 * 113.66011 * 255.49373 * 13 12 10 16 16 C 1.53948 * 87.29454 * 270.25933 * 15 13 12 17 17 H 1.09005 * 113.66014 * 89.73686 * 16 15 13 18 18 N 1.46499 * 113.66613 * 220.79242 * 16 15 13 19 19 C 1.36941 * 119.99975 * 255.49757 * 18 16 15 20 20 H 1.07994 * 120.00350 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99777 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00048 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47147 * 60.00173 * 23 21 19 25 25 H 1.48503 * 109.47418 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47381 * 300.00426 * 23 21 19 27 27 C 1.52902 * 86.78237 * 335.26597 * 16 15 13 28 28 C 1.52915 * 121.13671 * 150.62403 * 27 16 15 29 29 C 1.53951 * 86.78385 * 100.81247 * 28 27 16 30 30 C 1.52904 * 121.13497 * 259.17690 * 27 16 15 31 31 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 32 32 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 33 33 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 35 35 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 36 36 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 37 37 H 1.07999 * 119.99941 * 180.27784 * 5 4 3 38 38 H 1.07997 * 120.00486 * 179.97438 * 6 5 4 39 39 H 1.08002 * 119.99716 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47082 * 205.23660 * 9 8 3 41 41 H 1.09004 * 109.46635 * 325.23485 * 9 8 3 42 42 H 0.96996 * 120.00465 * 359.97438 * 12 10 9 43 43 H 1.08999 * 113.58475 * 24.86546 * 15 13 12 44 44 H 1.09006 * 113.58211 * 155.65838 * 15 13 12 45 45 H 0.97000 * 119.99767 * 75.49623 * 18 16 15 46 46 H 0.97001 * 119.99639 * 179.97438 * 22 21 19 47 47 H 1.08997 * 113.66176 * 215.28477 * 28 27 16 48 48 H 1.09001 * 113.65832 * 346.33996 * 28 27 16 49 49 H 1.09003 * 113.57712 * 270.13653 * 29 28 27 50 50 H 1.08997 * 113.64944 * 139.35277 * 29 28 27 51 51 H 1.09000 * 113.66043 * 13.65819 * 30 27 16 52 52 H 1.08998 * 113.66405 * 144.61897 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9481 4.0294 -0.0007 7 6 2.6249 3.4107 1.1922 8 6 2.1693 2.1054 1.1928 9 6 1.8174 1.4307 2.4936 10 6 3.0012 0.6383 2.9849 11 8 4.0298 0.6232 2.3424 12 7 2.9171 -0.0537 4.1384 13 6 4.0682 -0.8236 4.6164 14 1 5.0202 -0.4243 4.2663 15 6 3.9230 -2.3426 4.4129 16 6 3.2665 -2.3926 5.8045 17 1 2.1847 -2.2607 5.7828 18 7 3.6858 -3.5411 6.6116 19 6 2.8404 -4.6052 6.7794 20 1 1.8647 -4.5981 6.3165 21 6 3.2380 -5.6937 7.5438 22 7 4.4273 -5.7027 8.1075 23 14 2.0846 -7.1449 7.7734 24 1 1.7618 -7.7351 6.4494 25 1 2.7408 -8.1689 8.6255 26 1 0.8337 -6.6844 8.4281 27 6 4.0351 -1.1086 6.1183 28 6 3.4851 -0.0794 7.1066 29 6 4.4618 -0.6751 8.1367 30 6 5.3204 -1.1388 6.9459 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2578 1.5015 -2.1247 37 1 3.0691 3.8260 -2.1255 38 1 3.3042 5.0490 -0.0011 39 1 2.7281 3.9471 2.1240 40 1 1.5525 2.1854 3.2342 41 1 0.9713 0.7613 2.3383 42 1 2.0947 -0.0413 4.6526 43 1 3.2464 -2.6112 3.6016 44 1 4.8763 -2.8688 4.3613 45 1 4.5623 -3.5477 7.0270 46 1 4.7049 -6.4631 8.6419 47 1 3.7109 0.9518 6.8351 48 1 2.4359 -0.2326 7.3590 49 1 4.0383 -1.4965 8.7149 50 1 4.9497 0.0737 8.7607 51 1 5.7373 -2.1382 7.0702 52 1 6.0625 -0.4064 6.6284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078659030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:48 Heat of formation + Delta-G solvation = 14.352527 kcal Electronic energy + Delta-G solvation = -30111.696219 eV Core-core repulsion = 26269.353774 eV Total energy + Delta-G solvation = -3842.342445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.95952 -40.90925 -39.51328 -36.34473 -35.73223 -35.18980 -33.92755 -33.30273 -31.68633 -30.35987 -28.59413 -26.69664 -26.42796 -25.49953 -24.73976 -23.94277 -23.00338 -22.07549 -21.38183 -20.98007 -19.60225 -18.79578 -18.02065 -17.43102 -17.15350 -16.87561 -16.72255 -16.34903 -15.93154 -15.74348 -15.60498 -15.32647 -14.93252 -14.63330 -14.35795 -14.18233 -13.99296 -13.89682 -13.79780 -13.47220 -13.30118 -13.16127 -12.98323 -12.86398 -12.80487 -12.71535 -12.64371 -12.48616 -12.19688 -12.14165 -11.92089 -11.85379 -11.68603 -11.54036 -11.27349 -11.19055 -10.89355 -10.85328 -10.66053 -9.88134 -9.65865 -9.44814 -8.94591 -7.92659 -5.20069 0.45801 0.54705 1.47654 1.49846 1.55767 1.68906 2.19225 2.57209 2.93103 3.38228 3.49805 3.69180 3.69245 3.77690 3.87476 3.93663 4.00277 4.03041 4.09333 4.12417 4.15107 4.28382 4.31963 4.37968 4.49891 4.56403 4.59937 4.65159 4.67943 4.73504 4.75366 4.78078 4.87887 4.90462 5.02735 5.04591 5.09052 5.10248 5.14131 5.18707 5.19995 5.25621 5.29819 5.39864 5.50342 5.60276 5.62144 5.64638 5.65854 5.71776 5.78327 6.17815 6.29304 6.64782 7.33640 7.36341 8.13898 8.36869 9.30356 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.002572 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.346880 B =10882.948732 C =12138.959499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.134 4.134 5 C -0.126 4.126 6 C -0.135 4.135 7 C -0.118 4.118 8 C -0.079 4.079 9 C -0.100 4.100 10 C 0.517 3.483 11 O -0.577 6.577 12 N -0.695 5.695 13 C 0.152 3.848 14 H 0.082 0.918 15 C -0.174 4.174 16 C 0.181 3.819 17 H 0.082 0.918 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.077 0.923 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.969 3.031 24 H -0.281 1.281 25 H -0.299 1.299 26 H -0.276 1.276 27 C -0.110 4.110 28 C -0.107 4.107 29 C -0.131 4.131 30 C -0.115 4.115 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.414 0.586 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.377 0.623 46 H 0.250 0.750 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.080 0.920 51 H 0.046 0.954 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.157 21.750 -13.641 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.079 4.079 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.153 4.153 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.139 4.139 10 C 0.305 3.695 11 O -0.457 6.457 12 N -0.346 5.346 13 C 0.045 3.955 14 H 0.100 0.900 15 C -0.216 4.216 16 C 0.070 3.930 17 H 0.100 0.900 18 N -0.359 5.359 19 C -0.372 4.372 20 H 0.094 0.906 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.798 3.202 24 H -0.208 1.208 25 H -0.225 1.225 26 H -0.202 1.202 27 C -0.113 4.113 28 C -0.144 4.144 29 C -0.168 4.168 30 C -0.153 4.153 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.138 0.862 42 H 0.251 0.749 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.211 0.789 46 H 0.058 0.942 47 H 0.118 0.882 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.099 0.901 51 H 0.064 0.936 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.602 21.601 -14.077 26.880 hybrid contribution 0.030 -1.533 0.546 1.627 sum -7.572 20.068 -13.531 25.361 Atomic orbital electron populations 1.21740 0.93076 1.02429 1.02664 1.20558 0.97339 0.92337 1.02328 1.19911 0.98682 0.96140 0.93205 1.21246 1.00371 0.95827 0.97752 1.21412 0.99267 0.94667 0.99043 1.21383 1.00508 1.00965 0.92437 1.21265 0.98625 0.94536 0.99151 1.19330 1.00541 0.94468 0.93560 1.20790 0.96335 1.00659 0.96136 1.21030 0.89697 0.78799 0.80010 1.90712 1.33315 1.64551 1.57079 1.45510 1.16295 1.48896 1.23857 1.21302 0.89788 0.90504 0.93918 0.90007 1.24127 1.01068 0.96090 1.00327 1.21548 0.96362 0.85652 0.89389 0.90009 1.42557 1.17775 1.16749 1.58864 1.19632 0.97521 0.95862 1.24218 0.90559 1.25505 0.98482 1.01454 1.01226 1.69806 1.20859 1.32064 1.39203 0.85281 0.78273 0.79265 0.77356 1.20756 1.22542 1.20206 1.23280 0.98854 0.97043 0.92088 1.22612 0.99272 0.97961 0.94583 1.22655 0.97927 1.00121 0.96102 1.22519 0.95567 1.00902 0.96296 0.91789 0.92016 0.91722 0.91226 0.92621 0.85149 0.84271 0.84241 0.84824 0.85075 0.86170 0.74943 0.92603 0.91969 0.78949 0.94161 0.88236 0.90885 0.92471 0.90148 0.93568 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.72 71.98 0.70 -1.38 16 2 C -0.09 -1.72 5.38 29.85 0.16 -1.56 16 3 C -0.08 -1.68 5.13 -19.87 -0.10 -1.78 16 4 C -0.13 -2.61 9.68 22.27 0.22 -2.40 16 5 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 6 C -0.14 -2.36 10.05 22.27 0.22 -2.14 16 7 C -0.12 -2.23 9.68 22.27 0.22 -2.02 16 8 C -0.08 -1.61 4.37 -19.87 -0.09 -1.70 16 9 C -0.10 -1.68 5.16 29.10 0.15 -1.53 16 10 C 0.52 12.69 7.05 87.65 0.62 13.30 16 11 O -0.58 -19.70 15.68 -3.05 -0.05 -19.75 16 12 N -0.69 -15.86 5.07 -441.15 -2.24 -18.10 16 13 C 0.15 4.45 4.08 45.28 0.18 4.64 16 14 H 0.08 2.67 7.54 -2.38 -0.02 2.65 16 15 C -0.17 -6.23 7.68 31.23 0.24 -5.99 16 16 C 0.18 6.72 4.28 45.28 0.19 6.92 16 17 H 0.08 2.90 8.12 -2.38 -0.02 2.88 16 18 N -0.72 -35.09 5.35 -321.57 -1.72 -36.81 16 19 C -0.24 -12.99 9.98 84.03 0.84 -12.15 16 20 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 22 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 23 Si 0.97 45.66 29.55 68.60 2.03 47.68 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 C -0.11 -3.32 0.91 -52.32 -0.05 -3.36 16 28 C -0.11 -2.61 7.43 30.89 0.23 -2.38 16 29 C -0.13 -3.78 8.08 31.23 0.25 -3.53 16 30 C -0.11 -3.60 7.45 30.88 0.23 -3.37 16 31 H 0.06 0.83 6.83 -2.39 -0.02 0.81 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.34 8.05 -2.38 -0.02 1.32 16 35 H 0.06 1.27 6.41 -2.39 -0.02 1.25 16 36 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.13 1.39 8.05 -2.39 -0.02 1.37 16 41 H 0.12 1.63 5.64 -2.38 -0.01 1.62 16 42 H 0.41 7.19 8.54 -92.71 -0.79 6.40 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 45 H 0.38 19.85 5.86 -92.71 -0.54 19.31 16 46 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 47 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.05 1.76 6.42 -2.39 -0.02 1.75 16 52 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -70.84 414.82 2.80 -68.05 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: -0.41 Total: 43.57 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 4.91 Total: -26.16 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.68 Total: -113.39 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.84 2.80 -68.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.399 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds