Wall clock time and date at job start Wed Apr 1 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47459 * 2 1 4 4 C 1.38252 * 120.00182 * 265.03160 * 3 2 1 5 5 C 1.38214 * 119.99972 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.38214 * 119.99506 * 359.70230 * 6 5 4 8 8 C 1.38207 * 119.99778 * 84.99718 * 3 2 1 9 9 C 1.50698 * 120.00320 * 0.02562 * 8 3 2 10 10 C 1.50709 * 109.46999 * 84.99654 * 9 8 3 11 11 O 1.21280 * 119.99916 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00084 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99930 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.95076 * 336.40754 * 13 12 10 15 15 C 1.53955 * 113.66234 * 107.81356 * 13 12 10 16 16 C 1.53957 * 87.29400 * 89.74137 * 15 13 12 17 17 H 1.09002 * 113.65635 * 270.26077 * 16 15 13 18 18 N 1.46493 * 113.66200 * 139.20574 * 16 15 13 19 19 C 1.36935 * 119.99854 * 107.81212 * 18 16 15 20 20 H 1.07998 * 120.00548 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99685 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00127 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47407 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47093 * 120.00378 * 23 21 19 26 26 H 1.48505 * 109.47009 * 240.00020 * 23 21 19 27 27 C 1.52904 * 86.78379 * 24.73199 * 16 15 13 28 28 C 1.52910 * 121.13510 * 209.38616 * 27 16 15 29 29 C 1.53957 * 86.78122 * 209.38051 * 28 27 16 30 30 C 1.52909 * 121.13701 * 100.82200 * 27 16 15 31 31 H 1.09000 * 109.47572 * 59.99845 * 1 2 3 32 32 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47145 * 299.99847 * 1 2 3 34 34 H 1.09003 * 109.47145 * 240.00153 * 2 1 3 35 35 H 1.09000 * 109.47572 * 120.00155 * 2 1 3 36 36 H 1.08001 * 119.99927 * 359.97438 * 4 3 2 37 37 H 1.08002 * 119.99779 * 179.97438 * 5 4 3 38 38 H 1.08000 * 120.00083 * 179.97438 * 6 5 4 39 39 H 1.07996 * 119.99737 * 180.29989 * 7 6 5 40 40 H 1.08998 * 109.47423 * 325.00448 * 9 8 3 41 41 H 1.09001 * 109.47780 * 204.99648 * 9 8 3 42 42 H 0.96996 * 119.99770 * 0.02562 * 12 10 9 43 43 H 1.08997 * 113.57526 * 204.34081 * 15 13 12 44 44 H 1.08998 * 113.58201 * 335.13936 * 15 13 12 45 45 H 0.97002 * 120.00012 * 287.81346 * 18 16 15 46 46 H 0.97007 * 119.99662 * 179.97438 * 22 21 19 47 47 H 1.09003 * 113.66688 * 94.91189 * 28 27 16 48 48 H 1.08997 * 113.66384 * 323.85427 * 28 27 16 49 49 H 1.08998 * 113.57948 * 139.33169 * 29 28 27 50 50 H 1.09000 * 113.57875 * 270.12813 * 29 28 27 51 51 H 1.08993 * 113.65927 * 36.14497 * 30 27 16 52 52 H 1.08999 * 113.66533 * 265.08675 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8209 3.3412 -1.1928 6 6 2.9536 4.0275 0.0000 7 6 2.6201 3.4124 1.1919 8 6 2.1643 2.1071 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9860 0.6377 2.9874 11 8 4.0161 0.6183 2.3474 12 7 2.8963 -0.0534 4.1409 13 6 4.0432 -0.8275 4.6222 14 1 4.7308 -1.1091 3.8246 15 6 4.7388 -0.2051 5.8465 16 6 3.7729 -1.0255 6.7208 17 1 2.8436 -0.5051 6.9526 18 7 4.4067 -1.6162 7.9020 19 6 4.1384 -1.1128 9.1469 20 1 3.4593 -0.2805 9.2580 21 6 4.7387 -1.6730 10.2662 22 7 5.5652 -2.6883 10.1310 23 14 4.3732 -0.9858 11.9644 24 1 3.4198 0.1464 11.8456 25 1 3.7762 -2.0497 12.8109 26 1 5.6339 -0.5074 12.5866 27 6 3.6584 -1.9891 5.5392 28 6 2.3827 -2.7971 5.2987 29 6 3.2851 -3.8677 4.6586 30 6 4.4347 -3.3062 5.5150 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.2573 1.5018 -2.1246 37 1 3.0777 3.8232 -2.1246 38 1 3.3136 5.0458 0.0000 39 1 2.7191 3.9501 2.1233 40 1 0.9582 0.7682 2.3355 41 1 1.5426 2.1904 3.2322 42 1 2.0724 -0.0383 4.6525 43 1 5.7821 -0.5021 5.9529 44 1 4.5941 0.8720 5.9295 45 1 5.0165 -2.3640 7.8023 46 1 5.9849 -3.0795 10.9132 47 1 1.6939 -2.3284 4.5958 48 1 1.8947 -3.1275 6.2156 49 1 3.0044 -4.8879 4.9205 50 1 3.4321 -3.7303 3.5873 51 1 4.5235 -3.7797 6.4927 52 1 5.3851 -3.2442 4.9849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078659031.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:54 Heat of formation + Delta-G solvation = 30.844354 kcal Electronic energy + Delta-G solvation = -30099.478545 eV Core-core repulsion = 26257.851239 eV Total energy + Delta-G solvation = -3841.627306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.76120 -39.98602 -38.48648 -35.05999 -34.49699 -34.05177 -32.83687 -32.12546 -29.91051 -29.63912 -27.75292 -25.48253 -24.71610 -24.11057 -23.98095 -22.68432 -21.96186 -21.03336 -20.43715 -19.95156 -17.98134 -17.31431 -16.91039 -16.56833 -16.26631 -15.68838 -15.39799 -15.10985 -14.84441 -14.52350 -14.35010 -14.00161 -13.81015 -13.69049 -13.45606 -13.21050 -13.08287 -12.66860 -12.51752 -12.40050 -12.22122 -11.98022 -11.95497 -11.80457 -11.65322 -11.47157 -11.37432 -10.99472 -10.95663 -10.87138 -10.83091 -10.67254 -10.19290 -10.11570 -9.89346 -9.82340 -9.65318 -9.35465 -8.91845 -8.84142 -8.71301 -8.70978 -6.97260 -5.81243 -3.09460 1.19978 1.28123 2.69218 3.18569 3.40213 3.46099 3.48238 3.69838 4.44080 4.55600 4.56294 4.72227 4.75315 4.78924 4.89105 4.96053 4.98371 5.03135 5.06053 5.14432 5.21167 5.21944 5.27079 5.32207 5.38634 5.44225 5.46749 5.64425 5.67919 5.70881 5.83298 5.86508 5.91610 5.95091 6.01842 6.03533 6.05697 6.15667 6.18830 6.21714 6.34089 6.37082 6.37662 6.42482 6.51272 6.52861 6.65465 6.77864 6.87862 6.94829 7.06626 7.63218 7.67024 8.32395 8.37628 9.49180 10.07364 10.42010 11.41157 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.002449 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.952578 B =11432.311654 C =12309.826109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.060 4.060 9 C -0.108 4.108 10 C 0.515 3.485 11 O -0.532 6.532 12 N -0.706 5.706 13 C 0.144 3.856 14 H 0.095 0.905 15 C -0.175 4.175 16 C 0.181 3.819 17 H 0.074 0.926 18 N -0.708 5.708 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.125 4.125 28 C -0.122 4.122 29 C -0.140 4.140 30 C -0.105 4.105 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.400 0.600 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.071 0.929 51 H 0.097 0.903 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.097 6.919 -21.945 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.148 4.148 10 C 0.301 3.699 11 O -0.408 6.408 12 N -0.356 5.356 13 C 0.038 3.962 14 H 0.113 0.887 15 C -0.217 4.217 16 C 0.068 3.932 17 H 0.092 0.908 18 N -0.346 5.346 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.128 4.128 28 C -0.160 4.160 29 C -0.177 4.177 30 C -0.143 4.143 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.234 0.766 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.222 0.778 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.115 0.885 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.406 6.979 -22.206 25.497 hybrid contribution -0.175 0.231 1.255 1.288 sum -10.581 7.209 -20.951 24.554 Atomic orbital electron populations 1.21774 0.94685 1.01851 1.02131 1.20567 0.95936 0.92889 1.03201 1.19659 0.98381 0.95701 0.92622 1.20963 1.00269 0.95199 0.97306 1.21091 0.99842 0.94838 0.97989 1.21061 1.00696 0.99984 0.92560 1.20994 0.98549 0.94485 0.98225 1.19100 0.99915 0.93940 0.93070 1.20768 0.97756 1.00235 0.96057 1.20414 0.89330 0.79547 0.80586 1.90724 1.31035 1.62577 1.56512 1.45633 1.16671 1.49636 1.23671 1.21489 0.87817 0.91387 0.95490 0.88731 1.24292 1.01242 1.00075 0.96142 1.21377 0.94393 0.91812 0.85575 0.90814 1.42376 1.52641 1.38646 1.00985 1.19326 1.21979 1.12013 0.84024 0.91153 1.24750 0.99768 0.98425 0.97909 1.69665 1.33554 1.25828 1.28889 0.86139 0.77404 0.78017 0.84743 1.20581 1.21884 1.21873 1.23439 0.97509 0.93866 0.97977 1.22625 0.95785 0.97091 1.00460 1.22821 0.97681 0.98367 0.98866 1.22463 0.96584 0.94384 1.00858 0.92518 0.92241 0.92483 0.91034 0.90935 0.86296 0.86314 0.86218 0.86187 0.87839 0.88013 0.76584 0.89692 0.92389 0.77803 0.93502 0.92328 0.89685 0.91929 0.91028 0.88464 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.72 37.15 0.36 -0.69 16 2 C -0.09 -0.81 5.38 -27.89 -0.15 -0.96 16 3 C -0.06 -0.68 5.13 -104.63 -0.54 -1.21 16 4 C -0.12 -1.18 9.68 -39.58 -0.38 -1.57 16 5 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 6 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 7 C -0.10 -1.12 9.68 -39.58 -0.38 -1.50 16 8 C -0.06 -0.66 4.37 -104.63 -0.46 -1.12 16 9 C -0.11 -1.04 5.16 -29.03 -0.15 -1.19 16 10 C 0.52 6.73 7.03 -10.98 -0.08 6.66 16 11 O -0.53 -9.17 15.63 5.56 0.09 -9.09 16 12 N -0.71 -8.79 4.80 -53.36 -0.26 -9.05 16 13 C 0.14 2.18 4.12 -67.48 -0.28 1.90 16 14 H 0.09 1.57 7.47 -51.93 -0.39 1.18 16 15 C -0.18 -3.10 7.68 -25.74 -0.20 -3.30 16 16 C 0.18 3.40 4.27 -67.48 -0.29 3.11 16 17 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 18 N -0.71 -17.00 5.30 -52.99 -0.28 -17.28 16 19 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C -0.13 -1.95 0.92 -154.71 -0.14 -2.09 16 28 C -0.12 -1.67 7.62 -26.28 -0.20 -1.87 16 29 C -0.14 -1.87 8.08 -25.74 -0.21 -2.08 16 30 C -0.11 -1.67 7.15 -26.28 -0.19 -1.85 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.39 6.80 -51.93 -0.35 0.04 16 34 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 35 H 0.07 0.75 6.42 -51.93 -0.33 0.42 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.10 0.79 5.62 -51.93 -0.29 0.50 16 41 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 42 H 0.40 4.12 8.42 -40.82 -0.34 3.77 16 43 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.39 9.86 6.23 -40.82 -0.25 9.60 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.06 0.69 7.58 -51.93 -0.39 0.30 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.10 1.77 7.03 -51.93 -0.36 1.41 16 52 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 414.52 15.07 6.25 6.25 Total: -1.00 -32.07 414.52 -11.42 -43.49 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -8.60 Total: 13.55 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -4.32 Total: -18.05 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.19 Total: -53.15 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.07 -11.42 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659031.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.338 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds