Wall clock time and date at job start Wed Apr 1 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47459 * 2 1 4 4 C 1.38252 * 120.00182 * 265.03160 * 3 2 1 5 5 C 1.38214 * 119.99972 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.38214 * 119.99506 * 359.70230 * 6 5 4 8 8 C 1.38207 * 119.99778 * 84.99718 * 3 2 1 9 9 C 1.50698 * 120.00320 * 0.02562 * 8 3 2 10 10 C 1.50709 * 109.46999 * 84.99654 * 9 8 3 11 11 O 1.21280 * 119.99916 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00084 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99930 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.95076 * 336.40754 * 13 12 10 15 15 C 1.53955 * 113.66234 * 107.81356 * 13 12 10 16 16 C 1.53957 * 87.29400 * 89.74137 * 15 13 12 17 17 H 1.09002 * 113.65635 * 270.26077 * 16 15 13 18 18 N 1.46493 * 113.66200 * 139.20574 * 16 15 13 19 19 C 1.36935 * 119.99854 * 107.81212 * 18 16 15 20 20 H 1.07998 * 120.00548 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99685 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00127 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47407 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47093 * 120.00378 * 23 21 19 26 26 H 1.48505 * 109.47009 * 240.00020 * 23 21 19 27 27 C 1.52904 * 86.78379 * 24.73199 * 16 15 13 28 28 C 1.52910 * 121.13510 * 209.38616 * 27 16 15 29 29 C 1.53957 * 86.78122 * 209.38051 * 28 27 16 30 30 C 1.52909 * 121.13701 * 100.82200 * 27 16 15 31 31 H 1.09000 * 109.47572 * 59.99845 * 1 2 3 32 32 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47145 * 299.99847 * 1 2 3 34 34 H 1.09003 * 109.47145 * 240.00153 * 2 1 3 35 35 H 1.09000 * 109.47572 * 120.00155 * 2 1 3 36 36 H 1.08001 * 119.99927 * 359.97438 * 4 3 2 37 37 H 1.08002 * 119.99779 * 179.97438 * 5 4 3 38 38 H 1.08000 * 120.00083 * 179.97438 * 6 5 4 39 39 H 1.07996 * 119.99737 * 180.29989 * 7 6 5 40 40 H 1.08998 * 109.47423 * 325.00448 * 9 8 3 41 41 H 1.09001 * 109.47780 * 204.99648 * 9 8 3 42 42 H 0.96996 * 119.99770 * 0.02562 * 12 10 9 43 43 H 1.08997 * 113.57526 * 204.34081 * 15 13 12 44 44 H 1.08998 * 113.58201 * 335.13936 * 15 13 12 45 45 H 0.97002 * 120.00012 * 287.81346 * 18 16 15 46 46 H 0.97007 * 119.99662 * 179.97438 * 22 21 19 47 47 H 1.09003 * 113.66688 * 94.91189 * 28 27 16 48 48 H 1.08997 * 113.66384 * 323.85427 * 28 27 16 49 49 H 1.08998 * 113.57948 * 139.33169 * 29 28 27 50 50 H 1.09000 * 113.57875 * 270.12813 * 29 28 27 51 51 H 1.08993 * 113.65927 * 36.14497 * 30 27 16 52 52 H 1.08999 * 113.66533 * 265.08675 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8209 3.3412 -1.1928 6 6 2.9536 4.0275 0.0000 7 6 2.6201 3.4124 1.1919 8 6 2.1643 2.1071 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9860 0.6377 2.9874 11 8 4.0161 0.6183 2.3474 12 7 2.8963 -0.0534 4.1409 13 6 4.0432 -0.8275 4.6222 14 1 4.7308 -1.1091 3.8246 15 6 4.7388 -0.2051 5.8465 16 6 3.7729 -1.0255 6.7208 17 1 2.8436 -0.5051 6.9526 18 7 4.4067 -1.6162 7.9020 19 6 4.1384 -1.1128 9.1469 20 1 3.4593 -0.2805 9.2580 21 6 4.7387 -1.6730 10.2662 22 7 5.5652 -2.6883 10.1310 23 14 4.3732 -0.9858 11.9644 24 1 3.4198 0.1464 11.8456 25 1 3.7762 -2.0497 12.8109 26 1 5.6339 -0.5074 12.5866 27 6 3.6584 -1.9891 5.5392 28 6 2.3827 -2.7971 5.2987 29 6 3.2851 -3.8677 4.6586 30 6 4.4347 -3.3062 5.5150 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.2573 1.5018 -2.1246 37 1 3.0777 3.8232 -2.1246 38 1 3.3136 5.0458 0.0000 39 1 2.7191 3.9501 2.1233 40 1 0.9582 0.7682 2.3355 41 1 1.5426 2.1904 3.2322 42 1 2.0724 -0.0383 4.6525 43 1 5.7821 -0.5021 5.9529 44 1 4.5941 0.8720 5.9295 45 1 5.0165 -2.3640 7.8023 46 1 5.9849 -3.0795 10.9132 47 1 1.6939 -2.3284 4.5958 48 1 1.8947 -3.1275 6.2156 49 1 3.0044 -4.8879 4.9205 50 1 3.4321 -3.7303 3.5873 51 1 4.5235 -3.7797 6.4927 52 1 5.3851 -3.2442 4.9849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078659031.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:52 Heat of formation + Delta-G solvation = 13.753338 kcal Electronic energy + Delta-G solvation = -30100.219667 eV Core-core repulsion = 26257.851239 eV Total energy + Delta-G solvation = -3842.368428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.97973 -40.90042 -39.50058 -36.43853 -35.68378 -35.17991 -33.96273 -33.33001 -31.65349 -30.35229 -28.61115 -26.72113 -26.45624 -25.37538 -24.72786 -24.05904 -22.96174 -22.04208 -21.47182 -20.99521 -19.44668 -19.01832 -18.02423 -17.39178 -17.07202 -16.92344 -16.70700 -16.32505 -15.99608 -15.76619 -15.54319 -15.35789 -14.92144 -14.61416 -14.34544 -14.19502 -13.99492 -13.90098 -13.79756 -13.53863 -13.34187 -13.18645 -12.96806 -12.86961 -12.79397 -12.70142 -12.63176 -12.55558 -12.12988 -12.11456 -11.99206 -11.82124 -11.67047 -11.53185 -11.33055 -11.18919 -10.90089 -10.82196 -10.63773 -9.93494 -9.66524 -9.44952 -8.94129 -7.93364 -5.20689 0.45278 0.54227 1.47518 1.48279 1.57766 1.66845 2.15782 2.56927 2.92341 3.38053 3.47470 3.66731 3.68651 3.78103 3.88564 3.95809 3.99176 4.00600 4.08210 4.13236 4.17222 4.31872 4.32675 4.37535 4.52735 4.56373 4.59347 4.64476 4.66891 4.74586 4.76825 4.78363 4.84292 4.97206 5.00968 5.06167 5.08936 5.11263 5.11567 5.13946 5.19973 5.25853 5.28924 5.43280 5.49981 5.52843 5.61876 5.65417 5.66799 5.70515 5.77921 6.17463 6.28965 6.62414 7.31171 7.35688 8.13587 8.36388 9.30138 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.002449 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.952578 B =11432.311654 C =12309.826109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.077 4.077 4 C -0.132 4.132 5 C -0.126 4.126 6 C -0.137 4.137 7 C -0.122 4.122 8 C -0.079 4.079 9 C -0.100 4.100 10 C 0.518 3.482 11 O -0.576 6.576 12 N -0.696 5.696 13 C 0.165 3.835 14 H 0.084 0.916 15 C -0.174 4.174 16 C 0.169 3.831 17 H 0.082 0.918 18 N -0.722 5.722 19 C -0.238 4.238 20 H 0.078 0.922 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.969 3.031 24 H -0.265 1.265 25 H -0.294 1.294 26 H -0.298 1.298 27 C -0.115 4.115 28 C -0.113 4.113 29 C -0.125 4.125 30 C -0.116 4.116 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.414 0.586 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.376 0.624 46 H 0.249 0.751 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.514 7.852 -23.356 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.077 4.077 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.155 4.155 7 C -0.140 4.140 8 C -0.079 4.079 9 C -0.139 4.139 10 C 0.306 3.694 11 O -0.455 6.455 12 N -0.347 5.347 13 C 0.058 3.942 14 H 0.102 0.898 15 C -0.217 4.217 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.359 5.359 19 C -0.370 4.370 20 H 0.095 0.905 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.222 1.222 26 H -0.226 1.226 27 C -0.118 4.118 28 C -0.150 4.150 29 C -0.163 4.163 30 C -0.154 4.154 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.251 0.749 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.209 0.791 46 H 0.058 0.942 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.105 0.895 51 H 0.087 0.913 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.888 7.948 -23.646 28.079 hybrid contribution 0.617 0.005 1.589 1.705 sum -12.271 7.952 -22.057 26.464 Atomic orbital electron populations 1.21747 0.93070 1.02604 1.02536 1.20566 0.97285 0.91946 1.02620 1.19939 0.98493 0.96412 0.92896 1.21263 1.00211 0.95660 0.97893 1.21415 0.99251 0.94871 0.98844 1.21364 1.00616 1.00940 0.92566 1.21259 0.98866 0.94867 0.98996 1.19322 1.00569 0.94288 0.93743 1.20795 0.96546 1.00603 0.95982 1.21022 0.89667 0.78871 0.79842 1.90712 1.33048 1.64003 1.57738 1.45515 1.16294 1.49076 1.23783 1.21078 0.88290 0.90773 0.94019 0.89835 1.24153 1.00040 0.99897 0.97573 1.21678 0.94453 0.93141 0.84869 0.89981 1.42548 1.53014 1.38599 1.01746 1.19722 1.20705 1.11338 0.85194 0.90459 1.25521 1.00528 0.99337 1.01472 1.69820 1.35311 1.27593 1.29323 0.85131 0.77000 0.77591 0.80401 1.18888 1.22173 1.22577 1.23274 0.99143 0.93472 0.95894 1.22579 0.95224 0.96503 1.00692 1.22766 0.95601 0.98796 0.99108 1.22454 0.97816 0.95027 1.00109 0.92254 0.91278 0.91956 0.90928 0.92179 0.84808 0.84262 0.84569 0.85428 0.85496 0.85742 0.74897 0.91832 0.92395 0.79104 0.94166 0.89499 0.90698 0.90981 0.89514 0.91310 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.72 71.98 0.70 -0.98 16 2 C -0.09 -1.44 5.38 29.85 0.16 -1.28 16 3 C -0.08 -1.53 5.13 -19.87 -0.10 -1.64 16 4 C -0.13 -2.44 9.68 22.27 0.22 -2.22 16 5 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 6 C -0.14 -2.52 10.05 22.27 0.22 -2.30 16 7 C -0.12 -2.46 9.68 22.27 0.22 -2.24 16 8 C -0.08 -1.61 4.37 -19.87 -0.09 -1.69 16 9 C -0.10 -1.66 5.16 29.10 0.15 -1.51 16 10 C 0.52 12.57 7.03 87.66 0.62 13.19 16 11 O -0.58 -19.41 15.63 -3.03 -0.05 -19.46 16 12 N -0.70 -15.78 4.80 -441.13 -2.12 -17.90 16 13 C 0.17 4.84 4.12 45.29 0.19 5.03 16 14 H 0.08 2.73 7.47 -2.38 -0.02 2.71 16 15 C -0.17 -6.19 7.68 31.23 0.24 -5.95 16 16 C 0.17 6.29 4.27 45.28 0.19 6.49 16 17 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 18 N -0.72 -35.24 5.30 -321.57 -1.70 -36.94 16 19 C -0.24 -12.84 9.97 84.03 0.84 -12.01 16 20 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 21 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 22 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 23 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 27 C -0.12 -3.49 0.92 -52.31 -0.05 -3.54 16 28 C -0.11 -2.81 7.62 30.89 0.24 -2.58 16 29 C -0.13 -3.10 8.08 31.23 0.25 -2.85 16 30 C -0.12 -3.69 7.15 30.89 0.22 -3.47 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.06 0.66 6.80 -2.39 -0.02 0.65 16 34 H 0.07 1.15 8.05 -2.39 -0.02 1.13 16 35 H 0.06 1.14 6.42 -2.39 -0.02 1.12 16 36 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.13 1.50 5.62 -2.39 -0.01 1.49 16 41 H 0.12 1.51 8.05 -2.39 -0.02 1.49 16 42 H 0.41 7.19 8.42 -92.71 -0.78 6.41 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.38 19.88 6.23 -92.71 -0.58 19.30 16 46 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 47 H 0.09 1.70 7.58 -2.39 -0.02 1.68 16 48 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.07 2.61 7.03 -2.39 -0.02 2.59 16 52 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -70.71 414.52 2.91 -67.81 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -0.44 Total: 42.83 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 4.90 Total: -25.41 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -3.54 Total: -113.47 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.05 Total: -19.46 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.71 2.91 -67.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659031.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.560 kcal (2) G-P(sol) polarization free energy of solvation -70.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds