Wall clock time and date at job start Wed Apr 1 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46788 * 2 1 4 4 C 1.38256 * 120.00123 * 264.97809 * 3 2 1 5 5 C 1.38208 * 119.99971 * 179.78954 * 4 3 2 6 6 C 1.38260 * 120.00082 * 0.47399 * 5 4 3 7 7 C 1.38212 * 119.99650 * 359.50197 * 6 5 4 8 8 C 1.38215 * 119.99804 * 85.00691 * 3 2 1 9 9 C 1.50700 * 119.99989 * 359.96850 * 8 3 2 10 10 C 1.50708 * 109.46702 * 85.02726 * 9 8 3 11 11 O 1.21279 * 119.99753 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99703 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99930 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.88577 * 336.34773 * 13 12 10 15 15 C 1.53947 * 113.66326 * 107.81109 * 13 12 10 16 16 C 1.53951 * 87.29693 * 89.73753 * 15 13 12 17 17 H 1.09003 * 113.66252 * 139.20063 * 16 15 13 18 18 N 1.46493 * 113.74988 * 270.25290 * 16 15 13 19 19 C 1.36941 * 119.99756 * 252.22493 * 18 16 15 20 20 H 1.07995 * 119.99721 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99645 * 180.02562 * 19 18 16 22 22 N 1.31615 * 119.99819 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00401 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47028 * 90.00161 * 23 21 19 25 25 H 1.48500 * 109.47227 * 210.00780 * 23 21 19 26 26 H 1.48504 * 109.46863 * 330.00480 * 23 21 19 27 27 C 1.52906 * 113.66490 * 204.99948 * 13 12 10 28 28 C 1.52905 * 121.13798 * 144.70670 * 27 13 12 29 29 C 1.53950 * 86.78266 * 209.38414 * 28 27 13 30 30 C 1.52908 * 121.13494 * 36.14839 * 27 13 12 31 31 H 1.09007 * 109.47257 * 299.99900 * 1 2 3 32 32 H 1.09006 * 109.47247 * 59.99677 * 1 2 3 33 33 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47058 * 240.00743 * 2 1 3 35 35 H 1.08994 * 109.47682 * 120.00169 * 2 1 3 36 36 H 1.07999 * 120.00058 * 0.02562 * 4 3 2 37 37 H 1.08004 * 120.00265 * 180.25398 * 5 4 3 38 38 H 1.08002 * 120.00476 * 179.78830 * 6 5 4 39 39 H 1.07999 * 119.99941 * 180.25946 * 7 6 5 40 40 H 1.08997 * 109.47109 * 205.02359 * 9 8 3 41 41 H 1.08997 * 109.47295 * 325.02679 * 9 8 3 42 42 H 0.97004 * 120.00044 * 359.97438 * 12 10 9 43 43 H 1.08997 * 113.58163 * 204.34494 * 15 13 12 44 44 H 1.09007 * 113.57809 * 335.13958 * 15 13 12 45 45 H 0.96998 * 120.00135 * 72.22775 * 18 16 15 46 46 H 0.97007 * 120.00179 * 179.97438 * 22 21 19 47 47 H 1.09002 * 113.66299 * 323.85645 * 28 27 13 48 48 H 1.09002 * 113.66318 * 94.90546 * 28 27 13 49 49 H 1.08997 * 113.58027 * 270.12807 * 29 28 27 50 50 H 1.09000 * 113.57880 * 139.33811 * 29 28 27 51 51 H 1.09007 * 113.66030 * 265.08946 * 30 27 13 52 52 H 1.08997 * 113.66793 * 36.14244 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3615 2.0378 -1.1927 5 6 2.8179 3.3423 -1.1931 6 6 2.9547 4.0272 0.0002 7 6 2.6251 3.4107 1.1924 8 6 2.1643 2.1071 1.1925 9 6 1.8054 1.4348 2.4925 10 6 2.9846 0.6377 2.9880 11 8 4.0150 0.6181 2.3487 12 7 2.8943 -0.0524 4.1422 13 6 4.0404 -0.8276 4.6237 14 1 4.7260 -1.1110 3.8251 15 6 4.7372 -0.2053 5.8472 16 6 3.7705 -1.0235 6.7226 17 1 4.2419 -1.4631 7.6016 18 7 2.5220 -0.3239 7.0353 19 6 2.3009 0.1493 8.3012 20 1 3.0468 0.0063 9.0690 21 6 1.1177 0.8118 8.5977 22 7 0.9054 1.2670 9.8142 23 14 -0.1728 1.0584 7.2698 24 1 -1.1088 -0.0944 7.2689 25 1 -0.9274 2.3087 7.5390 26 1 0.4922 1.1571 5.9456 27 6 3.6544 -1.9879 5.5417 28 6 4.4289 -3.3061 5.5182 29 6 3.1140 -3.9860 5.9409 30 6 2.3776 -2.7945 5.3022 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.2583 1.5015 -2.1245 37 1 3.0712 3.8256 -2.1251 38 1 3.3147 5.0454 0.0002 39 1 2.7279 3.9470 2.1242 40 1 1.5415 2.1909 3.2319 41 1 0.9571 0.7688 2.3351 42 1 2.0705 -0.0357 4.6541 43 1 5.7802 -0.5034 5.9535 44 1 4.5940 0.8722 5.9294 45 1 1.8519 -0.1958 6.3458 46 1 0.0786 1.7303 10.0214 47 1 4.7709 -3.5949 4.5244 48 1 5.2142 -3.3656 6.2718 49 1 2.9841 -4.0506 7.0212 50 1 2.9309 -4.9339 5.4348 51 1 1.5241 -2.4453 5.8833 52 1 2.1430 -2.9396 4.2477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078659032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:58 Heat of formation + Delta-G solvation = 38.786471 kcal Electronic energy + Delta-G solvation = -30957.815026 eV Core-core repulsion = 27116.532116 eV Total energy + Delta-G solvation = -3841.282910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.83719 -39.96777 -38.42791 -35.41207 -34.41252 -33.77399 -32.76707 -32.12881 -30.51784 -29.60090 -27.75017 -25.57546 -24.72763 -24.23927 -23.94598 -22.66415 -21.88303 -20.85185 -20.33112 -20.05633 -18.61076 -17.21625 -16.88718 -16.52263 -16.16087 -15.83138 -15.25593 -15.16176 -14.79703 -14.58666 -14.46103 -13.95946 -13.83142 -13.66881 -13.45922 -13.12268 -13.01487 -12.82805 -12.67561 -12.31030 -12.19725 -12.10698 -11.95402 -11.89645 -11.87310 -11.48825 -11.40229 -11.08518 -11.05578 -10.90739 -10.78869 -10.77019 -10.39446 -10.13335 -9.87303 -9.80233 -9.63054 -9.51718 -8.98666 -8.82710 -8.63388 -8.61611 -7.41676 -5.89330 -3.26248 1.29240 1.37081 2.79338 3.13479 3.24052 3.27704 3.33812 3.78143 4.43618 4.55534 4.58047 4.65473 4.80700 4.82085 4.88530 4.90009 5.02314 5.03687 5.05024 5.13561 5.19867 5.25637 5.30797 5.35955 5.42893 5.48878 5.51571 5.55939 5.56351 5.75034 5.78441 5.80013 5.87189 5.87875 5.90660 5.94434 6.04039 6.07827 6.11964 6.13547 6.23951 6.30881 6.43132 6.46283 6.49384 6.57515 6.61618 6.66855 6.79826 6.94668 6.97288 7.72117 7.87478 8.29805 8.41656 9.05379 9.77299 9.95542 11.28748 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.003784 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.042579 B = 7398.626365 C = 8536.539026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.104 4.104 8 C -0.056 4.056 9 C -0.113 4.113 10 C 0.519 3.481 11 O -0.536 6.536 12 N -0.704 5.704 13 C 0.136 3.864 14 H 0.093 0.907 15 C -0.183 4.183 16 C 0.197 3.803 17 H 0.075 0.925 18 N -0.723 5.723 19 C -0.246 4.246 20 H 0.094 0.906 21 C 0.009 3.991 22 N -0.928 5.928 23 Si 0.880 3.120 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.282 1.282 27 C -0.132 4.132 28 C -0.105 4.105 29 C -0.134 4.134 30 C -0.129 4.129 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.400 0.600 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.355 0.645 46 H 0.261 0.739 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.074 0.926 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 -3.465 -19.739 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.122 4.122 8 C -0.057 4.057 9 C -0.153 4.153 10 C 0.305 3.695 11 O -0.413 6.413 12 N -0.356 5.356 13 C 0.031 3.969 14 H 0.111 0.889 15 C -0.225 4.225 16 C 0.085 3.915 17 H 0.093 0.907 18 N -0.364 5.364 19 C -0.376 4.376 20 H 0.112 0.888 21 C -0.188 4.188 22 N -0.575 5.575 23 Si 0.710 3.290 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.209 1.209 27 C -0.134 4.134 28 C -0.143 4.143 29 C -0.171 4.171 30 C -0.166 4.166 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.236 0.764 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.190 0.810 46 H 0.071 0.929 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.102 0.898 50 H 0.079 0.921 51 H 0.092 0.908 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.327 -3.394 -19.903 20.324 hybrid contribution -1.354 0.480 -0.575 1.547 sum 0.973 -2.915 -20.478 20.707 Atomic orbital electron populations 1.21787 0.94704 1.01846 1.02226 1.20560 0.95956 0.92931 1.03066 1.19655 0.98470 0.95717 0.92606 1.20939 1.00421 0.95201 0.97205 1.21075 1.00048 0.94823 0.97925 1.21055 1.00739 0.99942 0.92501 1.21023 0.98368 0.94492 0.98321 1.19103 0.99604 0.93970 0.92987 1.20808 0.97842 1.00478 0.96184 1.20373 0.89268 0.79346 0.80544 1.90689 1.30954 1.62829 1.56842 1.45806 1.16837 1.49495 1.23448 1.21682 0.88080 0.91720 0.95427 0.88860 1.24234 0.99300 1.01789 0.97185 1.20816 0.87455 0.89783 0.93396 0.90701 1.42466 1.16541 1.67295 1.10099 1.19099 1.02616 1.29565 0.86298 0.88802 1.24661 0.97687 1.00374 0.96047 1.69680 1.26438 1.43104 1.18327 0.86663 0.82758 0.78005 0.81527 1.20772 1.21391 1.20902 1.23597 0.97795 0.93097 0.98928 1.22499 0.96746 0.93681 1.01384 1.22751 0.96282 0.96860 1.01203 1.22589 0.97397 0.96480 1.00150 0.92425 0.92474 0.92255 0.91054 0.91009 0.86326 0.86335 0.86206 0.86116 0.87878 0.87892 0.76356 0.90054 0.90847 0.81048 0.92879 0.90249 0.91110 0.89829 0.92059 0.90776 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.72 37.16 0.36 -0.99 16 2 C -0.09 -0.95 5.38 -27.88 -0.15 -1.10 16 3 C -0.06 -0.80 5.13 -104.62 -0.54 -1.34 16 4 C -0.12 -1.35 9.68 -39.59 -0.38 -1.73 16 5 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 6 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 7 C -0.10 -1.35 9.68 -39.58 -0.38 -1.73 16 8 C -0.06 -0.75 4.37 -104.62 -0.46 -1.21 16 9 C -0.11 -1.51 5.16 -29.03 -0.15 -1.66 16 10 C 0.52 8.28 7.03 -10.98 -0.08 8.21 16 11 O -0.54 -10.05 15.63 5.56 0.09 -9.97 16 12 N -0.70 -11.24 4.93 -53.37 -0.26 -11.50 16 13 C 0.14 2.15 4.12 -67.49 -0.28 1.88 16 14 H 0.09 1.51 7.46 -51.93 -0.39 1.12 16 15 C -0.18 -3.11 7.69 -25.75 -0.20 -3.31 16 16 C 0.20 3.58 4.36 -67.48 -0.29 3.28 16 17 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 18 N -0.72 -15.68 4.54 -52.99 -0.24 -15.92 16 19 C -0.25 -6.53 10.45 -15.06 -0.16 -6.69 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -27.99 13.97 55.49 0.78 -27.21 16 23 Si 0.88 20.53 27.74 -169.99 -4.71 15.82 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -5.88 6.38 56.52 0.36 -5.52 16 27 C -0.13 -1.96 0.78 -154.71 -0.12 -2.08 16 28 C -0.10 -1.30 7.84 -26.28 -0.21 -1.50 16 29 C -0.13 -1.69 8.08 -25.75 -0.21 -1.89 16 30 C -0.13 -1.83 7.27 -26.29 -0.19 -2.02 16 31 H 0.06 0.54 6.80 -51.92 -0.35 0.18 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.69 8.05 -51.93 -0.42 0.28 16 35 H 0.07 0.87 6.42 -51.93 -0.33 0.54 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.10 1.31 8.05 -51.93 -0.42 0.90 16 41 H 0.10 1.18 5.62 -51.93 -0.29 0.89 16 42 H 0.40 6.54 6.00 -40.82 -0.25 6.29 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 45 H 0.36 7.41 3.00 -40.82 -0.12 7.29 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.07 1.20 7.58 -51.93 -0.39 0.80 16 52 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 408.71 15.07 6.16 6.16 Total: -1.00 -31.12 408.71 -11.00 -42.12 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -8.48 Total: 17.76 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -4.32 Total: -17.26 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.27 Total: -54.64 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.71 Total: 15.82 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.12 -11.00 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.905 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds