Wall clock time and date at job start Wed Apr 1 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46788 * 2 1 4 4 C 1.38256 * 120.00123 * 264.97809 * 3 2 1 5 5 C 1.38208 * 119.99971 * 179.78954 * 4 3 2 6 6 C 1.38260 * 120.00082 * 0.47399 * 5 4 3 7 7 C 1.38212 * 119.99650 * 359.50197 * 6 5 4 8 8 C 1.38215 * 119.99804 * 85.00691 * 3 2 1 9 9 C 1.50700 * 119.99989 * 359.96850 * 8 3 2 10 10 C 1.50708 * 109.46702 * 85.02726 * 9 8 3 11 11 O 1.21279 * 119.99753 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99703 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99930 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.88577 * 336.34773 * 13 12 10 15 15 C 1.53947 * 113.66326 * 107.81109 * 13 12 10 16 16 C 1.53951 * 87.29693 * 89.73753 * 15 13 12 17 17 H 1.09003 * 113.66252 * 139.20063 * 16 15 13 18 18 N 1.46493 * 113.74988 * 270.25290 * 16 15 13 19 19 C 1.36941 * 119.99756 * 252.22493 * 18 16 15 20 20 H 1.07995 * 119.99721 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99645 * 180.02562 * 19 18 16 22 22 N 1.31615 * 119.99819 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00401 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47028 * 90.00161 * 23 21 19 25 25 H 1.48500 * 109.47227 * 210.00780 * 23 21 19 26 26 H 1.48504 * 109.46863 * 330.00480 * 23 21 19 27 27 C 1.52906 * 113.66490 * 204.99948 * 13 12 10 28 28 C 1.52905 * 121.13798 * 144.70670 * 27 13 12 29 29 C 1.53950 * 86.78266 * 209.38414 * 28 27 13 30 30 C 1.52908 * 121.13494 * 36.14839 * 27 13 12 31 31 H 1.09007 * 109.47257 * 299.99900 * 1 2 3 32 32 H 1.09006 * 109.47247 * 59.99677 * 1 2 3 33 33 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47058 * 240.00743 * 2 1 3 35 35 H 1.08994 * 109.47682 * 120.00169 * 2 1 3 36 36 H 1.07999 * 120.00058 * 0.02562 * 4 3 2 37 37 H 1.08004 * 120.00265 * 180.25398 * 5 4 3 38 38 H 1.08002 * 120.00476 * 179.78830 * 6 5 4 39 39 H 1.07999 * 119.99941 * 180.25946 * 7 6 5 40 40 H 1.08997 * 109.47109 * 205.02359 * 9 8 3 41 41 H 1.08997 * 109.47295 * 325.02679 * 9 8 3 42 42 H 0.97004 * 120.00044 * 359.97438 * 12 10 9 43 43 H 1.08997 * 113.58163 * 204.34494 * 15 13 12 44 44 H 1.09007 * 113.57809 * 335.13958 * 15 13 12 45 45 H 0.96998 * 120.00135 * 72.22775 * 18 16 15 46 46 H 0.97007 * 120.00179 * 179.97438 * 22 21 19 47 47 H 1.09002 * 113.66299 * 323.85645 * 28 27 13 48 48 H 1.09002 * 113.66318 * 94.90546 * 28 27 13 49 49 H 1.08997 * 113.58027 * 270.12807 * 29 28 27 50 50 H 1.09000 * 113.57880 * 139.33811 * 29 28 27 51 51 H 1.09007 * 113.66030 * 265.08946 * 30 27 13 52 52 H 1.08997 * 113.66793 * 36.14244 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3615 2.0378 -1.1927 5 6 2.8179 3.3423 -1.1931 6 6 2.9547 4.0272 0.0002 7 6 2.6251 3.4107 1.1924 8 6 2.1643 2.1071 1.1925 9 6 1.8054 1.4348 2.4925 10 6 2.9846 0.6377 2.9880 11 8 4.0150 0.6181 2.3487 12 7 2.8943 -0.0524 4.1422 13 6 4.0404 -0.8276 4.6237 14 1 4.7260 -1.1110 3.8251 15 6 4.7372 -0.2053 5.8472 16 6 3.7705 -1.0235 6.7226 17 1 4.2419 -1.4631 7.6016 18 7 2.5220 -0.3239 7.0353 19 6 2.3009 0.1493 8.3012 20 1 3.0468 0.0063 9.0690 21 6 1.1177 0.8118 8.5977 22 7 0.9054 1.2670 9.8142 23 14 -0.1728 1.0584 7.2698 24 1 -1.1088 -0.0944 7.2689 25 1 -0.9274 2.3087 7.5390 26 1 0.4922 1.1571 5.9456 27 6 3.6544 -1.9879 5.5417 28 6 4.4289 -3.3061 5.5182 29 6 3.1140 -3.9860 5.9409 30 6 2.3776 -2.7945 5.3022 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.2583 1.5015 -2.1245 37 1 3.0712 3.8256 -2.1251 38 1 3.3147 5.0454 0.0002 39 1 2.7279 3.9470 2.1242 40 1 1.5415 2.1909 3.2319 41 1 0.9571 0.7688 2.3351 42 1 2.0705 -0.0357 4.6541 43 1 5.7802 -0.5034 5.9535 44 1 4.5940 0.8722 5.9294 45 1 1.8519 -0.1958 6.3458 46 1 0.0786 1.7303 10.0214 47 1 4.7709 -3.5949 4.5244 48 1 5.2142 -3.3656 6.2718 49 1 2.9841 -4.0506 7.0212 50 1 2.9309 -4.9339 5.4348 51 1 1.5241 -2.4453 5.8833 52 1 2.1430 -2.9396 4.2477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078659032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:57 Heat of formation + Delta-G solvation = 22.554773 kcal Electronic energy + Delta-G solvation = -30958.518885 eV Core-core repulsion = 27116.532116 eV Total energy + Delta-G solvation = -3841.986769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.10311 -40.97367 -39.56084 -36.75966 -35.46745 -35.22916 -34.02033 -33.40562 -32.33027 -30.41544 -28.75163 -26.79607 -26.25706 -25.48392 -24.77355 -24.09319 -22.98022 -21.96051 -21.49876 -21.22376 -20.22720 -18.80338 -18.11798 -17.50241 -17.10820 -16.92491 -16.68043 -16.42901 -16.03271 -15.93173 -15.64783 -15.32213 -15.00452 -14.69823 -14.55916 -14.37477 -14.03252 -13.95550 -13.88187 -13.75999 -13.59264 -13.15551 -13.08552 -12.90943 -12.88747 -12.73468 -12.67414 -12.58036 -12.18398 -12.12092 -11.96701 -11.86107 -11.72287 -11.59052 -11.36014 -11.21611 -10.97018 -10.87146 -10.73502 -9.93118 -9.71417 -9.49921 -9.33169 -8.03793 -5.38421 0.40455 0.49533 1.27617 1.38096 1.44404 1.55647 2.09254 2.45307 2.86188 3.25682 3.27202 3.54960 3.60606 3.73380 3.82627 3.87780 3.92676 3.94764 4.01198 4.05980 4.07492 4.15613 4.27519 4.30198 4.43138 4.48485 4.56073 4.61476 4.62994 4.69622 4.71920 4.75585 4.85479 4.90573 4.95307 5.00589 5.05637 5.07432 5.13252 5.13415 5.15490 5.20652 5.21015 5.37408 5.53510 5.57034 5.59218 5.60304 5.61623 5.73343 5.78564 6.12609 6.20166 6.45878 7.03954 7.16541 7.78693 7.97503 9.17514 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.003784 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.042579 B = 7398.626365 C = 8536.539026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.077 4.077 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.133 4.133 7 C -0.126 4.126 8 C -0.077 4.077 9 C -0.111 4.111 10 C 0.520 3.480 11 O -0.566 6.566 12 N -0.705 5.705 13 C 0.141 3.859 14 H 0.097 0.903 15 C -0.179 4.179 16 C 0.180 3.820 17 H 0.063 0.937 18 N -0.723 5.723 19 C -0.231 4.231 20 H 0.058 0.942 21 C -0.060 4.060 22 N -0.982 5.982 23 Si 0.943 3.057 24 H -0.273 1.273 25 H -0.297 1.297 26 H -0.246 1.246 27 C -0.121 4.121 28 C -0.094 4.094 29 C -0.129 4.129 30 C -0.129 4.129 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.398 0.602 43 H 0.102 0.898 44 H 0.046 0.954 45 H 0.362 0.638 46 H 0.258 0.742 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.085 0.915 51 H 0.052 0.948 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -4.716 -23.288 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.077 4.077 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.151 4.151 7 C -0.144 4.144 8 C -0.077 4.077 9 C -0.150 4.150 10 C 0.308 3.692 11 O -0.444 6.444 12 N -0.356 5.356 13 C 0.036 3.964 14 H 0.115 0.885 15 C -0.221 4.221 16 C 0.070 3.930 17 H 0.082 0.918 18 N -0.365 5.365 19 C -0.362 4.362 20 H 0.076 0.924 21 C -0.251 4.251 22 N -0.632 5.632 23 Si 0.770 3.230 24 H -0.199 1.199 25 H -0.223 1.223 26 H -0.170 1.170 27 C -0.124 4.124 28 C -0.132 4.132 29 C -0.166 4.166 30 C -0.167 4.167 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.140 0.860 42 H 0.234 0.766 43 H 0.120 0.880 44 H 0.064 0.936 45 H 0.197 0.803 46 H 0.067 0.933 47 H 0.120 0.880 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.071 0.929 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.077 -4.681 -23.495 24.047 hybrid contribution -1.125 0.864 0.562 1.525 sum 0.952 -3.817 -22.934 23.269 Atomic orbital electron populations 1.21765 0.93411 1.02658 1.02342 1.20565 0.97035 0.91956 1.02762 1.19926 0.98539 0.96484 0.92728 1.21284 0.99855 0.95621 0.97746 1.21447 0.99001 0.94783 0.98759 1.21350 1.00485 1.00938 0.92346 1.21219 0.99256 0.94862 0.99065 1.19222 1.00811 0.94382 0.93328 1.20836 0.97203 1.00512 0.96441 1.20804 0.89565 0.78843 0.80006 1.90667 1.32288 1.63850 1.57639 1.45855 1.16685 1.49555 1.23481 1.21647 0.88053 0.91759 0.94980 0.88521 1.24189 1.00375 0.99854 0.97653 1.21020 0.86396 0.91155 0.94427 0.91837 1.42323 1.18072 1.67681 1.08440 1.19021 1.01418 1.28321 0.87454 0.92416 1.25462 1.00338 1.00842 0.98493 1.69876 1.27200 1.45036 1.21069 0.85607 0.79710 0.77506 0.80163 1.19869 1.22344 1.17049 1.23442 0.99710 0.93417 0.95799 1.22548 0.96681 0.91138 1.02863 1.22716 0.95894 0.97497 1.00526 1.22641 0.96100 0.96878 1.01072 0.92858 0.91809 0.91075 0.90080 0.92529 0.84151 0.83680 0.84392 0.86286 0.87542 0.86043 0.76551 0.87951 0.93553 0.80300 0.93337 0.88033 0.90438 0.91219 0.89623 0.92886 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.72 71.98 0.70 -1.57 16 2 C -0.09 -1.68 5.38 29.85 0.16 -1.52 16 3 C -0.08 -1.77 5.13 -19.86 -0.10 -1.87 16 4 C -0.13 -2.56 9.68 22.27 0.22 -2.35 16 5 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 6 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 7 C -0.13 -3.18 9.68 22.27 0.22 -2.96 16 8 C -0.08 -1.98 4.37 -19.87 -0.09 -2.07 16 9 C -0.11 -2.80 5.16 29.10 0.15 -2.65 16 10 C 0.52 16.01 7.03 87.66 0.62 16.63 16 11 O -0.57 -20.72 15.63 -3.03 -0.05 -20.77 16 12 N -0.70 -21.48 4.93 -441.15 -2.18 -23.66 16 13 C 0.14 4.24 4.12 45.28 0.19 4.42 16 14 H 0.10 2.91 7.46 -2.39 -0.02 2.89 16 15 C -0.18 -5.99 7.69 31.23 0.24 -5.75 16 16 C 0.18 6.50 4.36 45.29 0.20 6.69 16 17 H 0.06 2.41 8.10 -2.39 -0.02 2.40 16 18 N -0.72 -31.46 4.54 -321.56 -1.46 -32.92 16 19 C -0.23 -12.65 10.45 84.03 0.88 -11.77 16 20 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 21 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 22 N -0.98 -61.47 13.97 21.65 0.30 -61.17 16 23 Si 0.94 42.47 27.74 68.60 1.90 44.37 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.25 -9.41 6.38 99.48 0.63 -8.77 16 27 C -0.12 -3.38 0.78 -52.32 -0.04 -3.43 16 28 C -0.09 -2.04 7.84 30.88 0.24 -1.80 16 29 C -0.13 -2.90 8.08 31.23 0.25 -2.65 16 30 C -0.13 -3.36 7.27 30.88 0.22 -3.14 16 31 H 0.05 0.87 6.80 -2.38 -0.02 0.86 16 32 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.38 8.05 -2.39 -0.02 1.37 16 35 H 0.06 1.27 6.42 -2.39 -0.02 1.25 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.12 2.88 8.06 -2.91 -0.02 2.85 16 40 H 0.11 2.59 8.05 -2.39 -0.02 2.57 16 41 H 0.12 2.56 5.62 -2.39 -0.01 2.54 16 42 H 0.40 12.32 6.00 -92.71 -0.56 11.76 16 43 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 44 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 45 H 0.36 14.75 3.00 -92.71 -0.28 14.47 16 46 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 47 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.05 1.62 7.58 -2.38 -0.02 1.60 16 52 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -69.90 408.71 3.50 -66.40 By element: Atomic # 1 Polarization: 51.18 SS G_CDS: 0.01 Total: 51.20 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.96 Total: -23.45 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -3.33 Total: -117.74 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.05 Total: -20.77 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.90 Total: 44.37 kcal Total: -69.90 3.50 -66.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078659032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.954 kcal (2) G-P(sol) polarization free energy of solvation -69.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds