Wall clock time and date at job start Wed Apr 1 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47333 * 2 1 4 4 C 1.38258 * 120.00024 * 270.21238 * 3 2 1 5 5 C 1.38211 * 120.00163 * 180.23255 * 4 3 2 6 6 C 1.38260 * 120.00003 * 359.80844 * 5 4 3 7 7 C 1.38215 * 119.99681 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99534 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46657 * 269.97221 * 8 7 6 10 10 O 1.21281 * 120.00380 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99810 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99957 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.88468 * 23.65882 * 12 11 9 14 14 C 1.53951 * 113.66149 * 252.18535 * 12 11 9 15 15 C 1.53949 * 87.29687 * 220.79539 * 14 12 11 16 16 H 1.09001 * 113.66460 * 270.26642 * 15 14 12 17 17 N 1.46493 * 113.74757 * 139.21697 * 15 14 12 18 18 C 1.36940 * 120.00320 * 107.77273 * 17 15 14 19 19 H 1.08004 * 119.99779 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00573 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00153 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00346 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47083 * 59.99881 * 22 20 18 24 24 H 1.48501 * 109.47515 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47113 * 299.99985 * 22 20 18 26 26 C 1.52911 * 113.66089 * 155.00115 * 12 11 9 27 27 C 1.52916 * 121.13706 * 13.65268 * 26 12 11 28 28 C 1.53948 * 86.78204 * 209.38003 * 27 26 12 29 29 C 1.52905 * 121.13728 * 265.09247 * 26 12 11 30 30 C 1.38211 * 120.00162 * 89.99512 * 3 2 1 31 31 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47325 * 300.00347 * 1 2 3 33 33 H 1.09006 * 109.46825 * 59.99977 * 1 2 3 34 34 H 1.09000 * 109.46885 * 239.99816 * 2 1 3 35 35 H 1.08993 * 109.46648 * 119.99872 * 2 1 3 36 36 H 1.08004 * 120.00379 * 0.06651 * 4 3 2 37 37 H 1.08002 * 120.00349 * 179.83142 * 5 4 3 38 38 H 1.07996 * 119.99840 * 179.97438 * 6 5 4 39 39 H 1.08993 * 109.47429 * 29.97620 * 8 7 6 40 40 H 1.08998 * 109.46961 * 149.97871 * 8 7 6 41 41 H 0.97001 * 120.00156 * 0.02562 * 11 9 8 42 42 H 1.09000 * 113.58216 * 335.40001 * 14 12 11 43 43 H 1.09000 * 113.57587 * 106.19510 * 14 12 11 44 44 H 0.97004 * 120.00489 * 287.77715 * 17 15 14 45 45 H 0.96992 * 120.00551 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.66146 * 323.85465 * 27 26 12 47 47 H 1.08998 * 113.66157 * 94.90537 * 27 26 12 48 48 H 1.08999 * 113.58034 * 270.13288 * 28 27 26 49 49 H 1.08998 * 113.58006 * 139.33485 * 28 27 26 50 50 H 1.09005 * 113.66367 * 265.09099 * 29 26 12 51 51 H 1.09001 * 113.66434 * 36.05436 * 29 26 12 52 52 H 1.08002 * 120.00200 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2587 2.0740 -1.1973 5 6 2.7240 3.3754 -1.1974 6 6 2.9594 4.0254 -0.0001 7 6 2.7290 3.3739 1.1969 8 6 2.9851 4.0826 2.5020 9 6 4.4081 3.8399 2.9345 10 8 5.1422 3.1589 2.2501 11 7 4.8651 4.3796 4.0818 12 6 6.2484 4.1432 4.5026 13 1 6.9073 3.8925 3.6713 14 6 6.3742 3.1881 5.7035 15 6 7.4693 4.1267 6.2420 16 1 8.4721 3.8701 5.9005 17 7 7.3989 4.3464 7.6887 18 6 8.3329 3.7790 8.5138 19 1 9.1218 3.1697 8.0979 20 6 8.2659 3.9867 9.8845 21 7 7.3043 4.7288 10.3915 22 14 9.5405 3.2132 11.0099 23 1 10.8918 3.7040 10.6383 24 1 9.2483 3.5844 12.4178 25 1 9.4942 1.7357 10.8684 26 6 6.8053 5.2321 5.4203 27 6 5.8835 6.2603 6.0771 28 6 7.0793 7.2291 6.0376 29 6 7.6198 6.3983 4.8596 30 6 2.2627 2.0723 1.1969 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 2.0744 1.5664 -2.1327 37 1 2.9033 3.8848 -2.1327 38 1 3.3234 5.0422 -0.0001 39 1 2.8221 5.1525 2.3725 40 1 2.3041 3.7007 3.2625 41 1 4.2779 4.9240 4.6294 42 1 5.4823 3.1545 6.3292 43 1 6.7419 2.1975 5.4360 44 1 6.6906 4.8939 8.0622 45 1 7.2576 4.8743 11.3493 46 1 5.0503 6.5677 5.4451 47 1 5.5737 5.9886 7.0862 48 1 7.7070 7.1835 6.9276 49 1 6.8061 8.2481 5.7635 50 1 8.6973 6.2369 4.8960 51 1 7.2757 6.7436 3.8846 52 1 2.0830 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078660782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:02 Heat of formation + Delta-G solvation = 27.927001 kcal Electronic energy + Delta-G solvation = -29399.946962 eV Core-core repulsion = 25558.193150 eV Total energy + Delta-G solvation = -3841.753812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.64168 -39.84558 -38.59663 -34.89652 -34.58987 -34.07890 -32.76389 -32.20714 -29.95997 -29.66154 -27.77975 -25.50055 -24.53667 -24.14891 -24.14004 -22.67037 -21.91160 -20.76769 -20.45860 -19.93975 -17.97561 -17.30922 -16.73196 -16.66768 -16.12520 -15.98277 -15.21472 -15.09196 -14.76238 -14.67072 -14.45272 -13.99455 -13.86164 -13.79566 -13.32832 -13.09490 -12.98988 -12.77171 -12.59294 -12.25516 -12.17587 -12.02603 -11.94003 -11.79723 -11.50523 -11.48583 -11.22593 -11.05358 -10.95329 -10.90233 -10.78404 -10.71343 -10.22971 -10.05287 -9.96447 -9.86258 -9.61639 -9.44656 -8.89748 -8.86007 -8.71964 -8.61421 -6.98790 -5.81507 -3.09793 1.20661 1.28699 2.73277 3.27043 3.42056 3.46890 3.47543 3.72933 4.44728 4.51526 4.56325 4.67405 4.80032 4.88191 4.94337 4.95884 4.96763 5.04967 5.09244 5.10780 5.24221 5.25441 5.27737 5.28535 5.37970 5.44191 5.46035 5.64028 5.64519 5.68657 5.85804 5.89945 5.90721 5.95713 5.97978 5.98381 6.00509 6.06850 6.22873 6.32869 6.32892 6.40311 6.43562 6.49042 6.51741 6.59748 6.64293 6.86102 6.88559 6.93225 7.07511 7.67498 7.68422 8.35942 8.37592 9.49062 10.05658 10.40719 11.40713 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.002152 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.739907 B =13006.151383 C =14009.701963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.058 4.058 8 C -0.106 4.106 9 C 0.512 3.488 10 O -0.536 6.536 11 N -0.713 5.713 12 C 0.131 3.869 13 H 0.109 0.891 14 C -0.174 4.174 15 C 0.192 3.808 16 H 0.081 0.919 17 N -0.705 5.705 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.119 4.119 27 C -0.116 4.116 28 C -0.130 4.130 29 C -0.126 4.126 30 C -0.102 4.102 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.399 0.601 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.071 0.929 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.641 -0.278 -21.155 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.058 4.058 8 C -0.146 4.146 9 C 0.298 3.702 10 O -0.413 6.413 11 N -0.363 5.363 12 C 0.026 3.974 13 H 0.126 0.874 14 C -0.216 4.216 15 C 0.079 3.921 16 H 0.099 0.901 17 N -0.344 5.344 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.122 4.122 27 C -0.154 4.154 28 C -0.167 4.167 29 C -0.164 4.164 30 C -0.120 4.120 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.233 0.767 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.222 0.778 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.109 0.891 49 H 0.074 0.926 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.950 -0.849 -21.500 25.113 hybrid contribution 0.159 0.048 1.083 1.096 sum -12.791 -0.802 -20.417 24.106 Atomic orbital electron populations 1.21746 0.94766 1.01645 1.02147 1.20543 0.96084 0.92758 1.02942 1.19823 0.99181 0.96075 0.93088 1.20974 1.00560 0.95015 0.97352 1.21051 0.99645 0.95009 0.97799 1.20945 0.99890 1.00001 0.92011 1.19253 0.98586 0.94376 0.93631 1.20714 0.95173 1.02396 0.96291 1.20466 0.89163 0.79672 0.80918 1.90714 1.58343 1.38377 1.53848 1.46004 1.14010 1.52871 1.23435 1.22270 0.81916 0.97419 0.95760 0.87358 1.24265 1.02202 0.98734 0.96419 1.21055 0.95354 0.90610 0.85055 0.90132 1.42333 1.33378 1.59393 0.99305 1.19255 1.05497 1.24343 0.88308 0.91137 1.24735 0.98708 1.00490 0.96827 1.69636 1.33735 1.42811 1.11882 0.86272 0.81040 0.78899 0.79999 1.21243 1.21730 1.21259 1.23607 0.98143 0.93290 0.97143 1.22421 0.96152 0.95784 1.01019 1.22727 0.98034 0.96600 0.99360 1.22702 0.99801 0.96539 0.97346 1.20845 0.99590 0.93937 0.97638 0.92450 0.92522 0.92654 0.91098 0.90960 0.86409 0.86207 0.86377 0.88092 0.88025 0.76651 0.90233 0.92223 0.77780 0.93427 0.91177 0.90329 0.89129 0.92573 0.91537 0.91079 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.09 -0.69 6.06 -27.89 -0.17 -0.86 16 3 C -0.08 -0.83 5.13 -104.63 -0.54 -1.37 16 4 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 5 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 6 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 7 C -0.06 -0.65 4.37 -104.62 -0.46 -1.10 16 8 C -0.11 -1.02 5.83 -29.03 -0.17 -1.19 16 9 C 0.51 6.84 7.82 -10.98 -0.09 6.76 16 10 O -0.54 -9.41 15.63 5.56 0.09 -9.33 16 11 N -0.71 -9.06 5.25 -53.37 -0.28 -9.34 16 12 C 0.13 1.99 4.12 -67.48 -0.28 1.72 16 13 H 0.11 1.78 7.46 -51.93 -0.39 1.39 16 14 C -0.17 -3.06 7.68 -25.75 -0.20 -3.25 16 15 C 0.19 3.70 4.36 -67.48 -0.29 3.40 16 16 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 17 N -0.71 -16.76 5.33 -52.99 -0.28 -17.04 16 18 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 22 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C -0.12 -1.86 1.06 -154.71 -0.16 -2.02 16 27 C -0.12 -1.71 6.78 -26.28 -0.18 -1.88 16 28 C -0.13 -1.95 8.08 -25.75 -0.21 -2.16 16 29 C -0.13 -1.83 7.84 -26.28 -0.21 -2.04 16 30 C -0.10 -1.13 9.36 -39.58 -0.37 -1.50 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.40 4.23 7.04 -40.82 -0.29 3.94 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.39 9.62 5.92 -40.82 -0.24 9.38 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.07 0.84 7.03 -51.93 -0.36 0.48 16 47 H 0.08 1.34 6.42 -51.93 -0.33 1.01 16 48 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 419.43 15.07 6.32 6.32 Total: -1.00 -31.69 419.43 -11.57 -43.26 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -8.76 Total: 13.53 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -4.36 Total: -17.88 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.16 Total: -52.93 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -31.69 -11.57 -43.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.190 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds