Wall clock time and date at job start Wed Apr 1 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47333 * 2 1 4 4 C 1.38258 * 120.00024 * 270.21238 * 3 2 1 5 5 C 1.38211 * 120.00163 * 180.23255 * 4 3 2 6 6 C 1.38260 * 120.00003 * 359.80844 * 5 4 3 7 7 C 1.38215 * 119.99681 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99534 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46657 * 269.97221 * 8 7 6 10 10 O 1.21281 * 120.00380 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99810 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99957 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.88468 * 23.65882 * 12 11 9 14 14 C 1.53951 * 113.66149 * 252.18535 * 12 11 9 15 15 C 1.53949 * 87.29687 * 220.79539 * 14 12 11 16 16 H 1.09001 * 113.66460 * 270.26642 * 15 14 12 17 17 N 1.46493 * 113.74757 * 139.21697 * 15 14 12 18 18 C 1.36940 * 120.00320 * 107.77273 * 17 15 14 19 19 H 1.08004 * 119.99779 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00573 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00153 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00346 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47083 * 59.99881 * 22 20 18 24 24 H 1.48501 * 109.47515 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47113 * 299.99985 * 22 20 18 26 26 C 1.52911 * 113.66089 * 155.00115 * 12 11 9 27 27 C 1.52916 * 121.13706 * 13.65268 * 26 12 11 28 28 C 1.53948 * 86.78204 * 209.38003 * 27 26 12 29 29 C 1.52905 * 121.13728 * 265.09247 * 26 12 11 30 30 C 1.38211 * 120.00162 * 89.99512 * 3 2 1 31 31 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47325 * 300.00347 * 1 2 3 33 33 H 1.09006 * 109.46825 * 59.99977 * 1 2 3 34 34 H 1.09000 * 109.46885 * 239.99816 * 2 1 3 35 35 H 1.08993 * 109.46648 * 119.99872 * 2 1 3 36 36 H 1.08004 * 120.00379 * 0.06651 * 4 3 2 37 37 H 1.08002 * 120.00349 * 179.83142 * 5 4 3 38 38 H 1.07996 * 119.99840 * 179.97438 * 6 5 4 39 39 H 1.08993 * 109.47429 * 29.97620 * 8 7 6 40 40 H 1.08998 * 109.46961 * 149.97871 * 8 7 6 41 41 H 0.97001 * 120.00156 * 0.02562 * 11 9 8 42 42 H 1.09000 * 113.58216 * 335.40001 * 14 12 11 43 43 H 1.09000 * 113.57587 * 106.19510 * 14 12 11 44 44 H 0.97004 * 120.00489 * 287.77715 * 17 15 14 45 45 H 0.96992 * 120.00551 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.66146 * 323.85465 * 27 26 12 47 47 H 1.08998 * 113.66157 * 94.90537 * 27 26 12 48 48 H 1.08999 * 113.58034 * 270.13288 * 28 27 26 49 49 H 1.08998 * 113.58006 * 139.33485 * 28 27 26 50 50 H 1.09005 * 113.66367 * 265.09099 * 29 26 12 51 51 H 1.09001 * 113.66434 * 36.05436 * 29 26 12 52 52 H 1.08002 * 120.00200 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2587 2.0740 -1.1973 5 6 2.7240 3.3754 -1.1974 6 6 2.9594 4.0254 -0.0001 7 6 2.7290 3.3739 1.1969 8 6 2.9851 4.0826 2.5020 9 6 4.4081 3.8399 2.9345 10 8 5.1422 3.1589 2.2501 11 7 4.8651 4.3796 4.0818 12 6 6.2484 4.1432 4.5026 13 1 6.9073 3.8925 3.6713 14 6 6.3742 3.1881 5.7035 15 6 7.4693 4.1267 6.2420 16 1 8.4721 3.8701 5.9005 17 7 7.3989 4.3464 7.6887 18 6 8.3329 3.7790 8.5138 19 1 9.1218 3.1697 8.0979 20 6 8.2659 3.9867 9.8845 21 7 7.3043 4.7288 10.3915 22 14 9.5405 3.2132 11.0099 23 1 10.8918 3.7040 10.6383 24 1 9.2483 3.5844 12.4178 25 1 9.4942 1.7357 10.8684 26 6 6.8053 5.2321 5.4203 27 6 5.8835 6.2603 6.0771 28 6 7.0793 7.2291 6.0376 29 6 7.6198 6.3983 4.8596 30 6 2.2627 2.0723 1.1969 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 2.0744 1.5664 -2.1327 37 1 2.9033 3.8848 -2.1327 38 1 3.3234 5.0422 -0.0001 39 1 2.8221 5.1525 2.3725 40 1 2.3041 3.7007 3.2625 41 1 4.2779 4.9240 4.6294 42 1 5.4823 3.1545 6.3292 43 1 6.7419 2.1975 5.4360 44 1 6.6906 4.8939 8.0622 45 1 7.2576 4.8743 11.3493 46 1 5.0503 6.5677 5.4451 47 1 5.5737 5.9886 7.0862 48 1 7.7070 7.1835 6.9276 49 1 6.8061 8.2481 5.7635 50 1 8.6973 6.2369 4.8960 51 1 7.2757 6.7436 3.8846 52 1 2.0830 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078660782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:01 Heat of formation + Delta-G solvation = 11.327909 kcal Electronic energy + Delta-G solvation = -29400.666752 eV Core-core repulsion = 25558.193150 eV Total energy + Delta-G solvation = -3842.473602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.90610 -40.74157 -39.61161 -36.26921 -35.71564 -35.28867 -34.06856 -33.22437 -31.73716 -30.37759 -28.64813 -26.78862 -26.26057 -25.49622 -24.79066 -24.00211 -22.86193 -21.81990 -21.71236 -20.85977 -19.63514 -18.76838 -17.96746 -17.58840 -17.24778 -16.77702 -16.46291 -16.35251 -16.02242 -15.89417 -15.69281 -15.18640 -14.80680 -14.67718 -14.48995 -14.31631 -13.99764 -13.84273 -13.75866 -13.51600 -13.17895 -13.11703 -12.95213 -12.86960 -12.82061 -12.69832 -12.58912 -12.33986 -12.24115 -12.13105 -12.06444 -11.85919 -11.69146 -11.61792 -11.33674 -11.21486 -10.98072 -10.80885 -10.69718 -9.83936 -9.65584 -9.46804 -8.94870 -7.94004 -5.20782 0.45059 0.53672 1.47145 1.48873 1.54854 1.69582 2.25912 2.57062 2.93120 3.36717 3.51117 3.63062 3.69641 3.78060 3.84146 3.95400 3.99413 4.02693 4.06229 4.14327 4.25061 4.28816 4.31191 4.41026 4.51002 4.57471 4.59608 4.63387 4.67984 4.71243 4.75696 4.80002 4.80508 4.86519 5.02423 5.03557 5.09069 5.09820 5.14458 5.21394 5.22343 5.24543 5.38026 5.38820 5.51112 5.52889 5.60066 5.64940 5.69094 5.72912 5.75589 6.16959 6.28480 6.65628 7.33413 7.35913 8.11888 8.37006 9.28583 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.002152 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.739907 B =13006.151383 C =14009.701963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.125 4.125 6 C -0.125 4.125 7 C -0.074 4.074 8 C -0.097 4.097 9 C 0.513 3.487 10 O -0.581 6.581 11 N -0.703 5.703 12 C 0.151 3.849 13 H 0.100 0.900 14 C -0.169 4.169 15 C 0.173 3.827 16 H 0.072 0.928 17 N -0.715 5.715 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.071 4.071 21 N -0.965 5.965 22 Si 0.967 3.033 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.282 1.282 26 C -0.110 4.110 27 C -0.108 4.108 28 C -0.130 4.130 29 C -0.117 4.117 30 C -0.123 4.123 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.412 0.588 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.379 0.621 45 H 0.251 0.749 46 H 0.109 0.891 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.097 0.903 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 0.391 -23.084 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.143 4.143 7 C -0.075 4.075 8 C -0.137 4.137 9 C 0.301 3.699 10 O -0.460 6.460 11 N -0.354 5.354 12 C 0.045 3.955 13 H 0.118 0.882 14 C -0.211 4.211 15 C 0.062 3.938 16 H 0.090 0.910 17 N -0.353 5.353 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.264 4.264 21 N -0.615 5.615 22 Si 0.797 3.203 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.208 1.208 26 C -0.112 4.112 27 C -0.146 4.146 28 C -0.167 4.167 29 C -0.155 4.155 30 C -0.141 4.141 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.250 0.750 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.214 0.786 45 H 0.059 0.941 46 H 0.127 0.873 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.101 0.899 50 H 0.076 0.924 51 H 0.116 0.884 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.065 -0.178 -23.466 27.359 hybrid contribution 0.507 -0.209 1.579 1.672 sum -13.558 -0.387 -21.887 25.749 Atomic orbital electron populations 1.21713 0.93754 1.02374 1.02036 1.20580 0.96936 0.91725 1.03102 1.20119 0.98984 0.96989 0.93144 1.21274 1.00270 0.95266 0.97991 1.21383 0.99076 0.95215 0.98561 1.21220 1.00105 1.00797 0.92213 1.19487 0.98885 0.94611 0.94487 1.20746 0.92505 1.04284 0.96139 1.21107 0.90287 0.78369 0.80130 1.90702 1.59860 1.40304 1.55163 1.45857 1.13032 1.52899 1.23610 1.21835 0.83382 0.95821 0.94434 0.88177 1.24108 1.00985 0.98514 0.97514 1.21310 0.95801 0.93473 0.83223 0.91006 1.42413 1.32685 1.59319 1.00931 1.19604 1.05554 1.23366 0.88968 0.91068 1.25455 1.00835 1.01825 0.98254 1.69778 1.35527 1.44639 1.11594 0.85303 0.79046 0.78119 0.77837 1.20578 1.22173 1.20811 1.23353 0.98442 0.93125 0.96293 1.22462 0.97014 0.94953 1.00147 1.22636 0.97608 0.98379 0.98112 1.22707 0.99187 0.95291 0.98275 1.21045 1.00470 0.94430 0.98124 0.91300 0.93000 0.92371 0.90278 0.91448 0.84593 0.84218 0.85140 0.85066 0.85999 0.75043 0.91023 0.93060 0.78629 0.94053 0.87331 0.93012 0.92815 0.89885 0.92397 0.88414 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.03 16 2 C -0.09 -1.31 6.06 29.85 0.18 -1.13 16 3 C -0.09 -1.79 5.13 -19.87 -0.10 -1.90 16 4 C -0.13 -2.33 9.70 22.27 0.22 -2.12 16 5 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 6 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 7 C -0.07 -1.53 4.37 -19.86 -0.09 -1.62 16 8 C -0.10 -1.61 5.83 29.10 0.17 -1.44 16 9 C 0.51 12.68 7.82 87.66 0.69 13.36 16 10 O -0.58 -19.84 15.63 -3.03 -0.05 -19.89 16 11 N -0.70 -16.24 5.25 -441.14 -2.32 -18.55 16 12 C 0.15 4.42 4.12 45.28 0.19 4.60 16 13 H 0.10 3.19 7.46 -2.39 -0.02 3.17 16 14 C -0.17 -5.97 7.68 31.23 0.24 -5.73 16 15 C 0.17 6.74 4.36 45.28 0.20 6.94 16 16 H 0.07 2.89 8.10 -2.39 -0.02 2.87 16 17 N -0.71 -34.84 5.33 -321.57 -1.71 -36.55 16 18 C -0.24 -13.33 9.97 84.03 0.84 -12.50 16 19 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 21 N -0.96 -57.77 13.06 21.65 0.28 -57.49 16 22 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 26 C -0.11 -3.30 1.06 -52.31 -0.06 -3.36 16 27 C -0.11 -2.99 6.78 30.89 0.21 -2.78 16 28 C -0.13 -3.72 8.08 31.23 0.25 -3.47 16 29 C -0.12 -3.17 7.84 30.88 0.24 -2.93 16 30 C -0.12 -2.62 9.36 22.27 0.21 -2.41 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 36 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 39 H 0.13 1.39 8.08 -2.39 -0.02 1.37 16 40 H 0.12 1.54 8.09 -2.39 -0.02 1.52 16 41 H 0.41 7.40 7.04 -92.71 -0.65 6.75 16 42 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.38 19.47 5.92 -92.71 -0.55 18.92 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 46 H 0.11 2.18 7.03 -2.39 -0.02 2.16 16 47 H 0.05 1.75 6.42 -2.39 -0.02 1.74 16 48 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 51 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -70.25 419.43 2.95 -67.30 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.29 Total: 42.40 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 5.00 Total: -25.30 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -3.75 Total: -112.59 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -70.25 2.95 -67.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.632 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds