Wall clock time and date at job start Wed Apr 1 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47185 * 2 1 4 4 C 1.38255 * 120.00018 * 89.99895 * 3 2 1 5 5 C 1.38217 * 120.00150 * 179.97438 * 4 3 2 6 6 C 1.38265 * 119.99832 * 359.97438 * 5 4 3 7 7 C 1.38207 * 119.99815 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00044 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47148 * 89.99801 * 8 7 6 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 H 1.09003 * 112.89033 * 26.83906 * 12 11 9 14 14 C 1.53946 * 113.66376 * 255.48799 * 12 11 9 15 15 C 1.53946 * 87.29899 * 270.26633 * 14 12 11 16 16 H 1.08998 * 113.66107 * 89.73230 * 15 14 12 17 17 N 1.46501 * 113.66383 * 220.79343 * 15 14 12 18 18 C 1.36936 * 119.99771 * 255.49442 * 17 15 14 19 19 H 1.08001 * 120.00173 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00003 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99996 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47104 * 60.00147 * 22 20 18 24 24 H 1.48497 * 109.46859 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46982 * 299.99883 * 22 20 18 26 26 C 1.52908 * 86.78036 * 335.26534 * 15 14 12 27 27 C 1.52907 * 121.13793 * 150.62717 * 26 15 14 28 28 C 1.53953 * 86.78457 * 100.81135 * 27 26 15 29 29 C 1.52912 * 121.12976 * 259.18265 * 26 15 14 30 30 C 1.38214 * 120.00293 * 270.22695 * 3 2 1 31 31 H 1.09005 * 109.46872 * 60.00245 * 1 2 3 32 32 H 1.08997 * 109.47476 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47465 * 300.00574 * 1 2 3 34 34 H 1.08996 * 109.47414 * 240.00101 * 2 1 3 35 35 H 1.09001 * 109.47349 * 119.99864 * 2 1 3 36 36 H 1.07999 * 120.00352 * 0.02562 * 4 3 2 37 37 H 1.08000 * 120.00473 * 179.97438 * 5 4 3 38 38 H 1.07994 * 119.99800 * 179.97438 * 6 5 4 39 39 H 1.09009 * 109.46601 * 329.99822 * 8 7 6 40 40 H 1.08998 * 109.47035 * 210.00330 * 8 7 6 41 41 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 42 42 H 1.09001 * 113.57676 * 24.87466 * 14 12 11 43 43 H 1.09002 * 113.58067 * 155.65769 * 14 12 11 44 44 H 0.96993 * 120.00036 * 75.49115 * 17 15 14 45 45 H 0.96998 * 120.00400 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.66519 * 215.28272 * 27 26 15 47 47 H 1.09005 * 113.65937 * 346.33943 * 27 26 15 48 48 H 1.09003 * 113.57647 * 270.13015 * 28 27 26 49 49 H 1.08996 * 113.58099 * 139.34208 * 28 27 26 50 50 H 1.09000 * 113.66453 * 13.65279 * 29 26 15 51 51 H 1.09003 * 113.66427 * 144.71482 * 29 26 15 52 52 H 1.08005 * 119.99714 * 0.05181 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7239 3.3755 1.1974 6 6 2.9554 4.0269 -0.0001 7 6 2.7251 3.3753 -1.1969 8 6 2.9768 4.0855 -2.5021 9 6 4.4001 3.8481 -2.9368 10 8 5.1373 3.1687 -2.2542 11 7 4.8552 4.3951 -4.0814 12 6 6.2405 4.1692 -4.5009 13 1 6.6519 3.2345 -4.1199 14 6 7.1592 5.3844 -4.2791 15 6 6.7682 5.8465 -5.6945 16 1 5.8858 6.4859 -5.7178 17 7 7.8886 6.3908 -6.4658 18 6 8.0001 7.7431 -6.6499 19 1 7.2620 8.4084 -6.2269 20 6 9.0619 8.2589 -7.3803 21 7 9.9617 7.4482 -7.8954 22 14 9.2145 10.1037 -7.6308 23 1 9.3274 10.7748 -6.3110 24 1 10.4259 10.3949 -8.4389 25 1 8.0119 10.6079 -8.3413 26 6 6.4701 4.3779 -5.9982 27 6 5.4071 3.9825 -7.0239 28 6 6.5684 3.7392 -8.0049 29 6 7.4647 3.5132 -6.7737 30 6 2.2582 2.0740 -1.1969 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0831 1.5634 2.1327 37 1 2.9036 3.8848 2.1326 38 1 3.3154 5.0451 0.0000 39 1 2.8102 5.1549 -2.3718 40 1 2.2960 3.7016 -3.2618 41 1 4.2654 4.9381 -4.6275 42 1 6.8141 6.0537 -3.4910 43 1 8.2128 5.1225 -4.1813 44 1 8.5512 5.7932 -6.8460 45 1 10.7035 7.8085 -8.4061 46 1 4.8601 3.0773 -6.7603 47 1 4.7533 4.8046 -7.3152 48 1 6.8400 4.6204 -8.5861 49 1 6.4401 2.8487 -8.6202 50 1 8.4546 3.9603 -6.8653 51 1 7.4960 2.4761 -6.4399 52 1 2.0739 1.5664 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078660783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:06 Heat of formation + Delta-G solvation = 28.858754 kcal Electronic energy + Delta-G solvation = -29413.178795 eV Core-core repulsion = 25571.465387 eV Total energy + Delta-G solvation = -3841.713408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.67066 -39.84833 -38.60533 -35.04343 -34.60890 -34.02081 -32.72636 -32.05582 -29.95075 -29.65918 -27.72900 -25.46274 -24.63113 -24.16986 -24.12115 -22.62457 -21.99013 -21.15426 -20.25870 -19.86555 -17.95620 -17.29008 -16.80574 -16.64758 -16.06403 -15.84289 -15.25080 -15.10955 -14.80291 -14.79257 -14.23705 -14.02810 -13.84471 -13.76575 -13.46217 -13.25607 -13.06823 -12.67656 -12.52823 -12.26992 -12.14466 -12.00236 -11.95377 -11.73743 -11.68073 -11.48746 -11.34698 -11.05909 -10.96159 -10.88236 -10.82482 -10.61052 -10.21079 -10.13763 -9.85638 -9.79849 -9.61854 -9.40002 -8.90299 -8.85250 -8.73030 -8.65389 -6.97969 -5.80732 -3.09229 1.20352 1.28304 2.72159 3.20905 3.41186 3.46143 3.46843 3.70880 4.43256 4.50452 4.55705 4.66784 4.78482 4.85769 4.92855 4.95933 5.02717 5.05464 5.07712 5.11387 5.23599 5.25724 5.27520 5.28298 5.36634 5.44010 5.46140 5.61435 5.62547 5.69539 5.83567 5.85477 5.93305 5.95566 5.97216 5.99732 6.05639 6.11212 6.19972 6.29649 6.33385 6.42362 6.43212 6.48097 6.52523 6.57098 6.67554 6.87361 6.88250 6.93691 7.08140 7.65396 7.66644 8.35289 8.38078 9.49509 10.07055 10.41884 11.41412 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.002138 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.908928 B =13095.977024 C =14005.806937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.058 4.058 8 C -0.105 4.105 9 C 0.514 3.486 10 O -0.534 6.534 11 N -0.705 5.705 12 C 0.131 3.869 13 H 0.093 0.907 14 C -0.174 4.174 15 C 0.192 3.808 16 H 0.074 0.926 17 N -0.709 5.709 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.131 4.131 29 C -0.111 4.111 30 C -0.103 4.103 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.400 0.600 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.056 0.944 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.471 -12.747 12.520 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.300 3.700 10 O -0.410 6.410 11 N -0.355 5.355 12 C 0.025 3.975 13 H 0.111 0.889 14 C -0.216 4.216 15 C 0.079 3.921 16 H 0.092 0.908 17 N -0.348 5.348 18 C -0.375 4.375 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.121 4.121 27 C -0.163 4.163 28 C -0.169 4.169 29 C -0.149 4.149 30 C -0.121 4.121 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.234 0.766 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.108 0.892 49 H 0.075 0.925 50 H 0.097 0.903 51 H 0.092 0.908 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.910 -13.027 12.962 26.369 hybrid contribution 0.216 1.208 -0.489 1.321 sum -18.694 -11.820 12.473 25.392 Atomic orbital electron populations 1.21745 0.94782 1.01609 1.02169 1.20536 0.96066 0.92779 1.02881 1.19814 0.99307 0.96058 0.93108 1.20977 1.00533 0.95008 0.97354 1.21070 0.99533 0.94975 0.97863 1.20977 0.99643 1.00096 0.92007 1.19248 0.98642 0.94357 0.93647 1.20702 0.94923 1.02607 0.96213 1.20440 0.89174 0.79549 0.80863 1.90723 1.58287 1.38755 1.53280 1.45625 1.13185 1.52828 1.23862 1.21689 0.81260 0.99493 0.95054 0.88946 1.24261 0.99453 0.96751 1.01180 1.21273 0.91889 0.89204 0.89692 0.90831 1.42391 1.26405 1.04818 1.61149 1.19217 1.07248 0.83516 1.27501 0.91277 1.24744 0.97664 0.97688 1.00670 1.69637 1.14843 1.33408 1.40003 0.86281 0.76965 0.85368 0.77633 1.21287 1.21707 1.21289 1.23518 0.97953 0.99303 0.91358 1.22646 0.96254 1.00507 0.96942 1.22747 0.96330 1.01700 0.96108 1.22462 0.98686 0.98226 0.95488 1.20818 0.99780 0.93934 0.97554 0.92545 0.92481 0.92623 0.91040 0.91107 0.86408 0.86152 0.86252 0.87900 0.88055 0.76634 0.92409 0.89693 0.77685 0.93401 0.90965 0.91724 0.89192 0.92477 0.90261 0.90779 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.15 0.37 -0.56 16 2 C -0.09 -0.65 6.06 -27.89 -0.17 -0.82 16 3 C -0.08 -0.82 5.13 -104.62 -0.54 -1.36 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 5 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 6 C -0.11 -1.19 9.70 -39.58 -0.38 -1.57 16 7 C -0.06 -0.64 4.37 -104.62 -0.46 -1.10 16 8 C -0.10 -0.99 5.83 -29.03 -0.17 -1.16 16 9 C 0.51 6.81 7.82 -10.98 -0.09 6.72 16 10 O -0.53 -9.40 15.67 5.55 0.09 -9.31 16 11 N -0.71 -8.88 5.07 -53.37 -0.27 -9.15 16 12 C 0.13 2.00 4.08 -67.49 -0.28 1.72 16 13 H 0.09 1.55 7.54 -51.93 -0.39 1.16 16 14 C -0.17 -3.11 7.68 -25.75 -0.20 -3.31 16 15 C 0.19 3.61 4.28 -67.48 -0.29 3.32 16 16 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 17 N -0.71 -16.93 5.35 -52.99 -0.28 -17.21 16 18 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 22 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.12 -1.86 0.91 -154.71 -0.14 -2.00 16 27 C -0.13 -1.72 7.43 -26.28 -0.20 -1.92 16 28 C -0.13 -1.99 8.08 -25.75 -0.21 -2.20 16 29 C -0.11 -1.76 7.45 -26.28 -0.20 -1.95 16 30 C -0.10 -1.09 9.36 -39.58 -0.37 -1.46 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.10 0.77 8.09 -51.92 -0.42 0.35 16 40 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 41 H 0.40 4.12 8.54 -40.82 -0.35 3.77 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.39 9.81 5.86 -40.82 -0.24 9.57 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 49 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.08 1.45 6.42 -51.93 -0.33 1.12 16 51 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 52 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 421.96 15.07 6.36 6.36 Total: -1.00 -32.04 421.96 -11.62 -43.67 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -8.88 Total: 13.22 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -4.34 Total: -17.86 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.17 Total: -53.06 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.04 -11.62 -43.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.526 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds