Wall clock time and date at job start Wed Apr 1 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47185 * 2 1 4 4 C 1.38255 * 120.00018 * 89.99895 * 3 2 1 5 5 C 1.38217 * 120.00150 * 179.97438 * 4 3 2 6 6 C 1.38265 * 119.99832 * 359.97438 * 5 4 3 7 7 C 1.38207 * 119.99815 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00044 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47148 * 89.99801 * 8 7 6 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 H 1.09003 * 112.89033 * 26.83906 * 12 11 9 14 14 C 1.53946 * 113.66376 * 255.48799 * 12 11 9 15 15 C 1.53946 * 87.29899 * 270.26633 * 14 12 11 16 16 H 1.08998 * 113.66107 * 89.73230 * 15 14 12 17 17 N 1.46501 * 113.66383 * 220.79343 * 15 14 12 18 18 C 1.36936 * 119.99771 * 255.49442 * 17 15 14 19 19 H 1.08001 * 120.00173 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00003 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99996 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47104 * 60.00147 * 22 20 18 24 24 H 1.48497 * 109.46859 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46982 * 299.99883 * 22 20 18 26 26 C 1.52908 * 86.78036 * 335.26534 * 15 14 12 27 27 C 1.52907 * 121.13793 * 150.62717 * 26 15 14 28 28 C 1.53953 * 86.78457 * 100.81135 * 27 26 15 29 29 C 1.52912 * 121.12976 * 259.18265 * 26 15 14 30 30 C 1.38214 * 120.00293 * 270.22695 * 3 2 1 31 31 H 1.09005 * 109.46872 * 60.00245 * 1 2 3 32 32 H 1.08997 * 109.47476 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47465 * 300.00574 * 1 2 3 34 34 H 1.08996 * 109.47414 * 240.00101 * 2 1 3 35 35 H 1.09001 * 109.47349 * 119.99864 * 2 1 3 36 36 H 1.07999 * 120.00352 * 0.02562 * 4 3 2 37 37 H 1.08000 * 120.00473 * 179.97438 * 5 4 3 38 38 H 1.07994 * 119.99800 * 179.97438 * 6 5 4 39 39 H 1.09009 * 109.46601 * 329.99822 * 8 7 6 40 40 H 1.08998 * 109.47035 * 210.00330 * 8 7 6 41 41 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 42 42 H 1.09001 * 113.57676 * 24.87466 * 14 12 11 43 43 H 1.09002 * 113.58067 * 155.65769 * 14 12 11 44 44 H 0.96993 * 120.00036 * 75.49115 * 17 15 14 45 45 H 0.96998 * 120.00400 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.66519 * 215.28272 * 27 26 15 47 47 H 1.09005 * 113.65937 * 346.33943 * 27 26 15 48 48 H 1.09003 * 113.57647 * 270.13015 * 28 27 26 49 49 H 1.08996 * 113.58099 * 139.34208 * 28 27 26 50 50 H 1.09000 * 113.66453 * 13.65279 * 29 26 15 51 51 H 1.09003 * 113.66427 * 144.71482 * 29 26 15 52 52 H 1.08005 * 119.99714 * 0.05181 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7239 3.3755 1.1974 6 6 2.9554 4.0269 -0.0001 7 6 2.7251 3.3753 -1.1969 8 6 2.9768 4.0855 -2.5021 9 6 4.4001 3.8481 -2.9368 10 8 5.1373 3.1687 -2.2542 11 7 4.8552 4.3951 -4.0814 12 6 6.2405 4.1692 -4.5009 13 1 6.6519 3.2345 -4.1199 14 6 7.1592 5.3844 -4.2791 15 6 6.7682 5.8465 -5.6945 16 1 5.8858 6.4859 -5.7178 17 7 7.8886 6.3908 -6.4658 18 6 8.0001 7.7431 -6.6499 19 1 7.2620 8.4084 -6.2269 20 6 9.0619 8.2589 -7.3803 21 7 9.9617 7.4482 -7.8954 22 14 9.2145 10.1037 -7.6308 23 1 9.3274 10.7748 -6.3110 24 1 10.4259 10.3949 -8.4389 25 1 8.0119 10.6079 -8.3413 26 6 6.4701 4.3779 -5.9982 27 6 5.4071 3.9825 -7.0239 28 6 6.5684 3.7392 -8.0049 29 6 7.4647 3.5132 -6.7737 30 6 2.2582 2.0740 -1.1969 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0831 1.5634 2.1327 37 1 2.9036 3.8848 2.1326 38 1 3.3154 5.0451 0.0000 39 1 2.8102 5.1549 -2.3718 40 1 2.2960 3.7016 -3.2618 41 1 4.2654 4.9381 -4.6275 42 1 6.8141 6.0537 -3.4910 43 1 8.2128 5.1225 -4.1813 44 1 8.5512 5.7932 -6.8460 45 1 10.7035 7.8085 -8.4061 46 1 4.8601 3.0773 -6.7603 47 1 4.7533 4.8046 -7.3152 48 1 6.8400 4.6204 -8.5861 49 1 6.4401 2.8487 -8.6202 50 1 8.4546 3.9603 -6.8653 51 1 7.4960 2.4761 -6.4399 52 1 2.0739 1.5664 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078660783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:05 Heat of formation + Delta-G solvation = 11.859125 kcal Electronic energy + Delta-G solvation = -29413.915954 eV Core-core repulsion = 25571.465387 eV Total energy + Delta-G solvation = -3842.450567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.93662 -40.73833 -39.61539 -36.35444 -35.75166 -35.28457 -33.88916 -33.18623 -31.69003 -30.36006 -28.59298 -26.69591 -26.42125 -25.49667 -24.77772 -23.97286 -23.02067 -22.16634 -21.34148 -20.85291 -19.60143 -18.77663 -18.00913 -17.47044 -17.11105 -16.73432 -16.71304 -16.34907 -15.93888 -15.79856 -15.65689 -15.32633 -14.86018 -14.65554 -14.48421 -14.18208 -13.98299 -13.89963 -13.76245 -13.47141 -13.30613 -13.16048 -12.95167 -12.86548 -12.80942 -12.71609 -12.58332 -12.48697 -12.19364 -12.11806 -11.92143 -11.85573 -11.67816 -11.61128 -11.27594 -11.19389 -10.89467 -10.85669 -10.66217 -9.88275 -9.65528 -9.47111 -8.94768 -7.92701 -5.20163 0.44754 0.53680 1.47442 1.49786 1.55670 1.69342 2.19250 2.57027 2.92068 3.37973 3.49754 3.68901 3.70233 3.77400 3.85362 3.93918 4.00696 4.02526 4.07794 4.14502 4.25885 4.28333 4.31929 4.41672 4.52842 4.59200 4.60453 4.64345 4.66693 4.72001 4.75128 4.81197 4.87797 4.90263 5.01812 5.05760 5.10023 5.10976 5.13979 5.19912 5.21949 5.25307 5.29781 5.40436 5.50111 5.59747 5.60423 5.64586 5.69304 5.71828 5.75541 6.16888 6.29092 6.65144 7.33924 7.36139 8.13734 8.36746 9.30152 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.002138 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.908928 B =13095.977024 C =14005.806937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.127 4.127 6 C -0.130 4.130 7 C -0.074 4.074 8 C -0.096 4.096 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.694 5.694 12 C 0.151 3.849 13 H 0.082 0.918 14 C -0.174 4.174 15 C 0.180 3.820 16 H 0.082 0.918 17 N -0.721 5.721 18 C -0.240 4.240 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.970 3.030 23 H -0.282 1.282 24 H -0.299 1.299 25 H -0.276 1.276 26 C -0.110 4.110 27 C -0.107 4.107 28 C -0.131 4.131 29 C -0.115 4.115 30 C -0.118 4.118 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.415 0.585 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.377 0.623 45 H 0.249 0.751 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.046 0.954 51 H 0.095 0.905 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.394 -13.284 12.980 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.075 4.075 8 C -0.135 4.135 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.345 5.345 12 C 0.044 3.956 13 H 0.100 0.900 14 C -0.217 4.217 15 C 0.070 3.930 16 H 0.100 0.900 17 N -0.359 5.359 18 C -0.372 4.372 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.799 3.201 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.202 1.202 26 C -0.112 4.112 27 C -0.144 4.144 28 C -0.168 4.168 29 C -0.153 4.153 30 C -0.136 4.136 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.251 0.749 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.211 0.789 45 H 0.058 0.942 46 H 0.118 0.882 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.064 0.936 51 H 0.114 0.886 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.909 -13.553 13.439 29.057 hybrid contribution 1.109 1.316 -0.531 1.802 sum -20.800 -12.237 12.908 27.368 Atomic orbital electron populations 1.21714 0.93762 1.02393 1.02036 1.20577 0.96895 0.91524 1.03223 1.20143 0.98870 0.97084 0.93069 1.21271 1.00273 0.95088 0.98197 1.21362 0.99305 0.95384 0.98425 1.21215 1.00297 1.00674 0.92570 1.19490 0.98901 0.94790 0.94303 1.20739 0.92415 1.04068 0.96268 1.21113 0.90338 0.78234 0.80005 1.90711 1.59867 1.40842 1.54589 1.45506 1.12026 1.52877 1.24099 1.21304 0.82311 0.97510 0.94441 0.90023 1.24130 0.98965 0.98224 1.00338 1.21560 0.90668 0.91205 0.89602 0.89975 1.42555 1.27696 1.03889 1.61810 1.19624 1.06656 0.85018 1.25897 0.90579 1.25519 0.97974 1.01705 1.01600 1.69801 1.15559 1.34959 1.41537 0.85269 0.76715 0.80685 0.77427 1.20808 1.22528 1.20200 1.23272 0.99133 0.96615 0.92160 1.22614 0.95397 1.01851 0.94570 1.22659 0.96821 1.01318 0.96030 1.22525 0.97167 0.99173 0.96444 1.21060 1.00129 0.94111 0.98304 0.92790 0.91237 0.92637 0.91024 0.90448 0.84670 0.84608 0.85777 0.85647 0.85046 0.74860 0.92616 0.91962 0.78934 0.94177 0.88227 0.90878 0.92468 0.90136 0.93560 0.88631 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.08 -1.16 6.06 29.85 0.18 -0.98 16 3 C -0.09 -1.69 5.13 -19.87 -0.10 -1.79 16 4 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 5 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 6 C -0.13 -2.69 9.70 22.27 0.22 -2.47 16 7 C -0.07 -1.52 4.37 -19.87 -0.09 -1.61 16 8 C -0.10 -1.53 5.83 29.10 0.17 -1.36 16 9 C 0.51 12.59 7.82 87.66 0.69 13.27 16 10 O -0.58 -19.94 15.67 -3.04 -0.05 -19.99 16 11 N -0.69 -15.78 5.07 -441.16 -2.24 -18.02 16 12 C 0.15 4.45 4.08 45.28 0.18 4.63 16 13 H 0.08 2.67 7.54 -2.39 -0.02 2.65 16 14 C -0.17 -6.27 7.68 31.23 0.24 -6.03 16 15 C 0.18 6.71 4.28 45.28 0.19 6.91 16 16 H 0.08 2.92 8.12 -2.39 -0.02 2.90 16 17 N -0.72 -35.16 5.35 -321.57 -1.72 -36.88 16 18 C -0.24 -12.99 9.98 84.03 0.84 -12.16 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 20 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 22 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C -0.11 -3.29 0.91 -52.31 -0.05 -3.34 16 27 C -0.11 -2.61 7.43 30.89 0.23 -2.38 16 28 C -0.13 -3.79 8.08 31.23 0.25 -3.54 16 29 C -0.12 -3.61 7.45 30.89 0.23 -3.38 16 30 C -0.12 -2.33 9.36 22.27 0.21 -2.13 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 35 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 36 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.13 1.46 8.09 -2.38 -0.02 1.45 16 40 H 0.13 1.33 8.08 -2.39 -0.02 1.31 16 41 H 0.41 7.10 8.54 -92.71 -0.79 6.31 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.38 19.88 5.86 -92.71 -0.54 19.34 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 46 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 48 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.05 1.77 6.42 -2.39 -0.02 1.75 16 51 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 52 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -71.31 421.96 2.89 -68.42 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: -0.43 Total: 42.50 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 5.01 Total: -25.35 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -3.68 Total: -113.38 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.31 2.89 -68.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.284 kcal (2) G-P(sol) polarization free energy of solvation -71.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds