Wall clock time and date at job start Wed Apr 1 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47335 * 2 1 4 4 C 1.38260 * 119.99559 * 89.99610 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38254 * 120.00319 * 0.26336 * 5 4 3 7 7 C 1.38216 * 119.99725 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99819 * 179.97438 * 7 6 5 9 9 C 1.50691 * 109.47264 * 90.00151 * 8 7 6 10 10 O 1.21285 * 119.99804 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00009 * 179.97438 * 11 9 8 13 13 H 1.08996 * 112.88573 * 333.15577 * 12 11 9 14 14 C 1.53950 * 113.66265 * 104.50313 * 12 11 9 15 15 C 1.53951 * 87.29447 * 139.20786 * 14 12 11 16 16 H 1.09008 * 113.65833 * 220.70053 * 15 14 12 17 17 N 1.46498 * 113.66533 * 89.73690 * 15 14 12 18 18 C 1.36938 * 120.00051 * 104.50402 * 17 15 14 19 19 H 1.08001 * 120.00154 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99921 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99897 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00057 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47182 * 89.99926 * 22 20 18 24 24 H 1.48498 * 109.47056 * 210.00074 * 22 20 18 25 25 H 1.48505 * 109.47060 * 330.00069 * 22 20 18 26 26 C 1.52907 * 113.66078 * 201.68721 * 12 11 9 27 27 C 1.52914 * 121.14061 * 94.90790 * 26 12 11 28 28 C 1.53956 * 86.78100 * 209.37277 * 27 26 12 29 29 C 1.52910 * 121.13863 * 346.34148 * 26 12 11 30 30 C 1.38209 * 120.00297 * 270.25684 * 3 2 1 31 31 H 1.09004 * 109.47325 * 300.00000 * 1 2 3 32 32 H 1.09006 * 109.46825 * 59.99630 * 1 2 3 33 33 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46885 * 240.00162 * 2 1 3 35 35 H 1.08998 * 109.47085 * 120.00377 * 2 1 3 36 36 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 37 37 H 1.07999 * 119.99941 * 180.27784 * 5 4 3 38 38 H 1.07997 * 120.00486 * 179.97438 * 6 5 4 39 39 H 1.09001 * 109.46746 * 209.99737 * 8 7 6 40 40 H 1.08996 * 109.46909 * 329.99403 * 8 7 6 41 41 H 0.97002 * 120.00338 * 359.97438 * 11 9 8 42 42 H 1.09003 * 113.57834 * 253.80526 * 14 12 11 43 43 H 1.09002 * 113.58351 * 24.60211 * 14 12 11 44 44 H 0.96998 * 119.99629 * 284.50380 * 17 15 14 45 45 H 0.96998 * 120.00014 * 179.97438 * 21 20 18 46 46 H 1.08992 * 113.65894 * 323.84819 * 27 26 12 47 47 H 1.08996 * 113.66361 * 94.90442 * 27 26 12 48 48 H 1.08995 * 113.58194 * 270.13153 * 28 27 26 49 49 H 1.09002 * 113.64495 * 139.34738 * 28 27 26 50 50 H 1.08997 * 113.66231 * 265.09112 * 29 26 12 51 51 H 1.08997 * 113.66361 * 36.06601 * 29 26 12 52 52 H 1.08000 * 119.99979 * 0.04161 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7290 3.3736 1.1975 6 6 2.9599 4.0252 0.0002 7 6 2.7239 3.3757 -1.1968 8 6 2.9751 4.0863 -2.5019 9 6 4.3962 3.8438 -2.9406 10 8 5.1328 3.1616 -2.2601 11 7 4.8490 4.3859 -4.0884 12 6 6.2307 4.1506 -4.5145 13 1 6.9038 3.9527 -3.6803 14 6 6.3582 3.1359 -5.6653 15 6 7.4302 4.0628 -6.2667 16 1 7.3613 4.1664 -7.3496 17 7 8.7893 3.7650 -5.8082 18 6 9.6663 3.1200 -6.6390 19 1 9.3561 2.8312 -7.6324 20 6 10.9543 2.8383 -6.2047 21 7 11.7970 2.2179 -7.0031 22 14 11.4915 3.3397 -4.4874 23 1 11.1965 2.2388 -3.5353 24 1 12.9503 3.6173 -4.4864 25 1 10.7548 4.5614 -4.0752 26 6 6.7573 5.1988 -5.4954 27 6 7.5586 6.4063 -5.0075 28 6 6.9894 7.1646 -6.2203 29 6 5.8099 6.1754 -6.1930 30 6 2.2577 2.0741 -1.1969 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.0831 1.5632 2.1327 37 1 2.9132 3.8811 2.1328 38 1 3.3239 5.0420 0.0002 39 1 2.2908 3.7057 -3.2603 40 1 2.8129 5.1560 -2.3702 41 1 4.2600 4.9318 -4.6324 42 1 6.7462 2.1669 -5.3512 43 1 5.4593 3.0546 -6.2765 44 1 9.0680 4.0247 -4.9162 45 1 12.6972 2.0214 -6.6998 46 1 7.2197 6.7976 -4.0483 47 1 8.6381 6.2611 -5.0497 48 1 7.6066 7.0826 -7.1149 49 1 6.7018 8.1922 -5.9978 50 1 5.4925 5.8459 -7.1822 51 1 4.9787 6.5008 -5.5675 52 1 2.0731 1.5667 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078660784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:11 Heat of formation + Delta-G solvation = 32.865145 kcal Electronic energy + Delta-G solvation = -29634.004005 eV Core-core repulsion = 25792.464327 eV Total energy + Delta-G solvation = -3841.539678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.76449 -39.88820 -38.63295 -35.20845 -34.63136 -34.13890 -32.73271 -32.19320 -30.29229 -29.69737 -27.84793 -25.67891 -24.59237 -24.26714 -24.14984 -22.62740 -22.02347 -20.91411 -20.41662 -20.00117 -18.28224 -17.40667 -16.86771 -16.69419 -16.19661 -15.99588 -15.27629 -15.13292 -14.91839 -14.82074 -14.34597 -14.00603 -13.87455 -13.80265 -13.33393 -13.12944 -13.00070 -12.80125 -12.69143 -12.33162 -12.27050 -12.16421 -12.05177 -11.95466 -11.91740 -11.51075 -11.48066 -11.07359 -11.01247 -10.95743 -10.91851 -10.84147 -10.26169 -10.13483 -9.91977 -9.79583 -9.62648 -9.53739 -8.92076 -8.88545 -8.72499 -8.68781 -7.30954 -5.79991 -3.16380 1.19991 1.28364 2.71208 3.23231 3.37809 3.42075 3.46628 3.71352 4.42457 4.50715 4.56123 4.58205 4.66531 4.70603 4.82162 4.88455 4.95095 4.95307 5.02495 5.05647 5.10166 5.20330 5.23476 5.24862 5.36043 5.37045 5.44848 5.54098 5.58421 5.63764 5.64407 5.75949 5.80941 5.84246 5.85562 5.91490 5.94086 5.98035 6.02536 6.12777 6.29419 6.32675 6.39926 6.42569 6.48352 6.55359 6.59414 6.62523 6.73850 6.88180 6.95042 7.62225 7.96575 8.34057 8.39422 9.16748 9.89211 10.07916 11.37861 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.002576 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.043697 B =10868.693514 C =11843.171827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.060 4.060 8 C -0.104 4.104 9 C 0.509 3.491 10 O -0.529 6.529 11 N -0.717 5.717 12 C 0.138 3.862 13 H 0.108 0.892 14 C -0.180 4.180 15 C 0.202 3.798 16 H 0.075 0.925 17 N -0.726 5.726 18 C -0.246 4.246 19 H 0.092 0.908 20 C 0.009 3.991 21 N -0.931 5.931 22 Si 0.880 3.120 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.276 1.276 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.133 4.133 29 C -0.113 4.113 30 C -0.102 4.102 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.396 0.604 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.364 0.636 45 H 0.260 0.740 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.060 0.940 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.427 6.035 11.351 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.060 4.060 8 C -0.144 4.144 9 C 0.295 3.705 10 O -0.405 6.405 11 N -0.368 5.368 12 C 0.034 3.966 13 H 0.126 0.874 14 C -0.222 4.222 15 C 0.090 3.910 16 H 0.093 0.907 17 N -0.365 5.365 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.578 5.578 22 Si 0.710 3.290 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.127 4.127 27 C -0.167 4.167 28 C -0.170 4.170 29 C -0.151 4.151 30 C -0.120 4.120 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.231 0.769 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.197 0.803 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.094 0.906 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -24.713 5.403 11.644 27.848 hybrid contribution 0.289 0.564 1.035 1.213 sum -24.424 5.967 12.678 28.158 Atomic orbital electron populations 1.21744 0.94774 1.01641 1.02100 1.20548 0.96055 0.92743 1.03016 1.19829 0.99162 0.96070 0.93089 1.20984 1.00455 0.94996 0.97386 1.21057 0.99572 0.95035 0.97826 1.20941 0.99844 1.00020 0.92035 1.19245 0.98747 0.94421 0.93610 1.20702 0.95115 1.02299 0.96271 1.20500 0.89215 0.79841 0.80960 1.90755 1.58014 1.37893 1.53827 1.46064 1.14108 1.53005 1.23645 1.22382 0.81746 0.96625 0.95894 0.87379 1.24243 1.00464 0.99910 0.97569 1.20580 0.84273 0.89846 0.96310 0.90696 1.42453 1.08622 1.69798 1.15662 1.19056 0.91821 1.29374 0.97354 0.88986 1.24648 0.96240 1.00310 0.97530 1.69693 1.06316 1.46035 1.35729 0.86623 0.77896 0.78631 0.85858 1.20872 1.21635 1.20224 1.23585 0.97931 0.93550 0.97661 1.22669 1.01129 0.95681 0.97207 1.22742 0.97605 0.97260 0.99399 1.22511 0.96250 0.96202 1.00153 1.20831 0.99653 0.93889 0.97626 0.92650 0.92575 0.92438 0.90934 0.91053 0.86365 0.86177 0.86395 0.88111 0.88165 0.76933 0.90756 0.90863 0.80295 0.92965 0.90919 0.90439 0.89811 0.92107 0.91122 0.90596 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.63 16 2 C -0.09 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.08 -0.85 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 6 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 7 C -0.06 -0.67 4.37 -104.62 -0.46 -1.13 16 8 C -0.10 -0.96 5.83 -29.04 -0.17 -1.13 16 9 C 0.51 6.85 7.82 -10.99 -0.09 6.76 16 10 O -0.53 -9.80 15.67 5.55 0.09 -9.72 16 11 N -0.72 -8.70 5.29 -53.37 -0.28 -8.98 16 12 C 0.14 2.15 4.01 -67.48 -0.27 1.88 16 13 H 0.11 2.05 7.54 -51.93 -0.39 1.66 16 14 C -0.18 -3.04 7.68 -25.75 -0.20 -3.24 16 15 C 0.20 3.75 4.35 -67.48 -0.29 3.46 16 16 H 0.08 1.41 8.12 -51.92 -0.42 0.99 16 17 N -0.73 -16.87 4.71 -52.99 -0.25 -17.12 16 18 C -0.25 -6.85 10.46 -15.06 -0.16 -7.01 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 22 Si 0.88 22.40 27.73 -169.99 -4.71 17.68 16 23 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 26 C -0.12 -1.83 0.91 -154.71 -0.14 -1.97 16 27 C -0.13 -1.90 7.59 -26.28 -0.20 -2.10 16 28 C -0.13 -1.64 8.08 -25.74 -0.21 -1.85 16 29 C -0.11 -1.27 7.16 -26.28 -0.19 -1.46 16 30 C -0.10 -1.14 9.36 -39.59 -0.37 -1.51 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.40 3.53 6.92 -40.82 -0.28 3.24 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.36 8.52 5.33 -40.82 -0.22 8.30 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.08 1.35 7.50 -51.93 -0.39 0.96 16 48 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.08 0.68 6.96 -51.93 -0.36 0.32 16 52 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 418.39 15.07 6.31 6.31 Total: -1.00 -33.96 418.39 -11.25 -45.22 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -8.83 Total: 11.80 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -4.34 Total: -16.82 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.24 Total: -54.46 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.96 -11.25 -45.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.080 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds