Wall clock time and date at job start Wed Apr 1 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47335 * 2 1 4 4 C 1.38260 * 119.99559 * 89.99610 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38254 * 120.00319 * 0.26336 * 5 4 3 7 7 C 1.38216 * 119.99725 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99819 * 179.97438 * 7 6 5 9 9 C 1.50691 * 109.47264 * 90.00151 * 8 7 6 10 10 O 1.21285 * 119.99804 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00009 * 179.97438 * 11 9 8 13 13 H 1.08996 * 112.88573 * 333.15577 * 12 11 9 14 14 C 1.53950 * 113.66265 * 104.50313 * 12 11 9 15 15 C 1.53951 * 87.29447 * 139.20786 * 14 12 11 16 16 H 1.09008 * 113.65833 * 220.70053 * 15 14 12 17 17 N 1.46498 * 113.66533 * 89.73690 * 15 14 12 18 18 C 1.36938 * 120.00051 * 104.50402 * 17 15 14 19 19 H 1.08001 * 120.00154 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99921 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99897 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00057 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47182 * 89.99926 * 22 20 18 24 24 H 1.48498 * 109.47056 * 210.00074 * 22 20 18 25 25 H 1.48505 * 109.47060 * 330.00069 * 22 20 18 26 26 C 1.52907 * 113.66078 * 201.68721 * 12 11 9 27 27 C 1.52914 * 121.14061 * 94.90790 * 26 12 11 28 28 C 1.53956 * 86.78100 * 209.37277 * 27 26 12 29 29 C 1.52910 * 121.13863 * 346.34148 * 26 12 11 30 30 C 1.38209 * 120.00297 * 270.25684 * 3 2 1 31 31 H 1.09004 * 109.47325 * 300.00000 * 1 2 3 32 32 H 1.09006 * 109.46825 * 59.99630 * 1 2 3 33 33 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46885 * 240.00162 * 2 1 3 35 35 H 1.08998 * 109.47085 * 120.00377 * 2 1 3 36 36 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 37 37 H 1.07999 * 119.99941 * 180.27784 * 5 4 3 38 38 H 1.07997 * 120.00486 * 179.97438 * 6 5 4 39 39 H 1.09001 * 109.46746 * 209.99737 * 8 7 6 40 40 H 1.08996 * 109.46909 * 329.99403 * 8 7 6 41 41 H 0.97002 * 120.00338 * 359.97438 * 11 9 8 42 42 H 1.09003 * 113.57834 * 253.80526 * 14 12 11 43 43 H 1.09002 * 113.58351 * 24.60211 * 14 12 11 44 44 H 0.96998 * 119.99629 * 284.50380 * 17 15 14 45 45 H 0.96998 * 120.00014 * 179.97438 * 21 20 18 46 46 H 1.08992 * 113.65894 * 323.84819 * 27 26 12 47 47 H 1.08996 * 113.66361 * 94.90442 * 27 26 12 48 48 H 1.08995 * 113.58194 * 270.13153 * 28 27 26 49 49 H 1.09002 * 113.64495 * 139.34738 * 28 27 26 50 50 H 1.08997 * 113.66231 * 265.09112 * 29 26 12 51 51 H 1.08997 * 113.66361 * 36.06601 * 29 26 12 52 52 H 1.08000 * 119.99979 * 0.04161 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7290 3.3736 1.1975 6 6 2.9599 4.0252 0.0002 7 6 2.7239 3.3757 -1.1968 8 6 2.9751 4.0863 -2.5019 9 6 4.3962 3.8438 -2.9406 10 8 5.1328 3.1616 -2.2601 11 7 4.8490 4.3859 -4.0884 12 6 6.2307 4.1506 -4.5145 13 1 6.9038 3.9527 -3.6803 14 6 6.3582 3.1359 -5.6653 15 6 7.4302 4.0628 -6.2667 16 1 7.3613 4.1664 -7.3496 17 7 8.7893 3.7650 -5.8082 18 6 9.6663 3.1200 -6.6390 19 1 9.3561 2.8312 -7.6324 20 6 10.9543 2.8383 -6.2047 21 7 11.7970 2.2179 -7.0031 22 14 11.4915 3.3397 -4.4874 23 1 11.1965 2.2388 -3.5353 24 1 12.9503 3.6173 -4.4864 25 1 10.7548 4.5614 -4.0752 26 6 6.7573 5.1988 -5.4954 27 6 7.5586 6.4063 -5.0075 28 6 6.9894 7.1646 -6.2203 29 6 5.8099 6.1754 -6.1930 30 6 2.2577 2.0741 -1.1969 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.0831 1.5632 2.1327 37 1 2.9132 3.8811 2.1328 38 1 3.3239 5.0420 0.0002 39 1 2.2908 3.7057 -3.2603 40 1 2.8129 5.1560 -2.3702 41 1 4.2600 4.9318 -4.6324 42 1 6.7462 2.1669 -5.3512 43 1 5.4593 3.0546 -6.2765 44 1 9.0680 4.0247 -4.9162 45 1 12.6972 2.0214 -6.6998 46 1 7.2197 6.7976 -4.0483 47 1 8.6381 6.2611 -5.0497 48 1 7.6066 7.0826 -7.1149 49 1 6.7018 8.1922 -5.9978 50 1 5.4925 5.8459 -7.1822 51 1 4.9787 6.5008 -5.5675 52 1 2.0731 1.5667 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078660784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:09 Heat of formation + Delta-G solvation = 12.995935 kcal Electronic energy + Delta-G solvation = -29634.865598 eV Core-core repulsion = 25792.464327 eV Total energy + Delta-G solvation = -3842.401271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.97737 -40.76940 -39.63470 -36.60927 -35.66946 -35.30783 -34.13577 -33.29159 -32.12534 -30.39824 -28.71510 -26.77127 -26.20067 -25.52141 -24.80754 -24.12830 -22.97018 -21.87255 -21.67275 -20.89066 -20.12058 -18.78383 -18.02741 -17.60934 -17.25244 -16.79148 -16.63915 -16.42470 -16.00322 -15.86962 -15.74682 -15.12210 -14.75122 -14.70121 -14.64771 -14.45987 -14.06919 -13.98144 -13.78455 -13.69249 -13.64262 -13.15561 -12.98033 -12.93097 -12.83212 -12.71252 -12.61271 -12.55029 -12.32218 -12.14558 -11.93179 -11.88759 -11.70945 -11.63812 -11.36062 -11.26116 -10.96792 -10.85630 -10.75033 -9.87320 -9.67776 -9.49153 -9.32925 -8.07310 -5.39661 0.42607 0.51290 1.30920 1.34729 1.39716 1.69144 2.25249 2.42032 2.90905 3.22824 3.26171 3.46680 3.67305 3.73424 3.82271 3.90598 3.95574 3.97675 4.02893 4.11206 4.14699 4.23145 4.28785 4.39910 4.49432 4.54544 4.57659 4.61052 4.62211 4.69212 4.77187 4.78916 4.84296 4.87220 5.00609 5.03789 5.07939 5.08339 5.14651 5.19258 5.21036 5.22711 5.27744 5.37097 5.45041 5.57449 5.58792 5.66414 5.69375 5.73155 5.75605 6.14754 6.18485 6.66397 7.02622 7.36595 7.79859 7.96764 9.14025 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.002576 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.043697 B =10868.693514 C =11843.171827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.127 4.127 6 C -0.127 4.127 7 C -0.076 4.076 8 C -0.093 4.093 9 C 0.507 3.493 10 O -0.587 6.587 11 N -0.699 5.699 12 C 0.147 3.853 13 H 0.071 0.929 14 C -0.172 4.172 15 C 0.180 3.820 16 H 0.071 0.929 17 N -0.732 5.732 18 C -0.225 4.225 19 H 0.064 0.936 20 C -0.058 4.058 21 N -0.979 5.979 22 Si 0.942 3.058 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.255 1.255 26 C -0.113 4.113 27 C -0.138 4.138 28 C -0.127 4.127 29 C -0.094 4.094 30 C -0.122 4.122 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.417 0.583 42 H 0.037 0.963 43 H 0.104 0.896 44 H 0.363 0.637 45 H 0.258 0.742 46 H 0.089 0.911 47 H 0.043 0.957 48 H 0.067 0.933 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.113 0.887 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.860 8.401 12.320 32.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.145 4.145 6 C -0.145 4.145 7 C -0.076 4.076 8 C -0.132 4.132 9 C 0.295 3.705 10 O -0.466 6.466 11 N -0.351 5.351 12 C 0.042 3.958 13 H 0.089 0.911 14 C -0.214 4.214 15 C 0.069 3.931 16 H 0.089 0.911 17 N -0.372 5.372 18 C -0.356 4.356 19 H 0.082 0.918 20 C -0.249 4.249 21 N -0.630 5.630 22 Si 0.770 3.230 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.180 1.180 26 C -0.115 4.115 27 C -0.175 4.175 28 C -0.165 4.165 29 C -0.132 4.132 30 C -0.140 4.140 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.256 0.744 42 H 0.056 0.944 43 H 0.122 0.878 44 H 0.196 0.804 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.106 0.894 50 H 0.102 0.898 51 H 0.131 0.869 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -28.243 7.828 12.593 31.899 hybrid contribution 1.284 -0.221 0.696 1.477 sum -26.959 7.608 13.289 31.004 Atomic orbital electron populations 1.21705 0.93526 1.02406 1.02117 1.20585 0.97118 0.91665 1.03034 1.20141 0.98998 0.97001 0.93203 1.21271 1.00350 0.95259 0.98054 1.21382 0.99194 0.95295 0.98615 1.21228 1.00116 1.00831 0.92331 1.19532 0.98760 0.94662 0.94645 1.20742 0.92195 1.04307 0.95983 1.21267 0.90458 0.78439 0.80289 1.90743 1.59888 1.40454 1.55558 1.45812 1.12784 1.52870 1.23673 1.21893 0.83227 0.96394 0.94334 0.91111 1.24142 1.00717 0.97973 0.98537 1.20871 0.82572 0.92977 0.96632 0.91129 1.42427 1.10057 1.69696 1.15056 1.19046 0.92302 1.27728 0.96559 0.91778 1.25356 0.96661 1.01510 1.01414 1.69848 1.06721 1.48537 1.37868 0.85601 0.77397 0.78835 0.81137 1.21389 1.21707 1.17980 1.23390 0.98690 0.92789 0.96616 1.22755 0.99108 0.96381 0.99304 1.22703 0.97526 0.98941 0.97304 1.22576 0.96155 0.93407 1.01031 1.21066 1.00375 0.94382 0.98151 0.92424 0.92738 0.91293 0.91405 0.90539 0.84734 0.84402 0.85216 0.85266 0.84850 0.74395 0.94424 0.87780 0.80405 0.93304 0.89287 0.93856 0.91407 0.89386 0.89780 0.86907 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 71.98 0.71 -1.02 16 2 C -0.09 -1.38 6.06 29.85 0.18 -1.20 16 3 C -0.09 -1.89 5.13 -19.87 -0.10 -1.99 16 4 C -0.13 -2.52 9.70 22.27 0.22 -2.30 16 5 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 6 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 7 C -0.08 -1.56 4.37 -19.86 -0.09 -1.65 16 8 C -0.09 -1.41 5.83 29.10 0.17 -1.24 16 9 C 0.51 12.52 7.82 87.65 0.69 13.20 16 10 O -0.59 -21.61 15.67 -3.04 -0.05 -21.66 16 11 N -0.70 -14.72 5.29 -441.17 -2.33 -17.06 16 12 C 0.15 4.40 4.01 45.28 0.18 4.58 16 13 H 0.07 2.72 7.54 -2.39 -0.02 2.70 16 14 C -0.17 -5.74 7.68 31.23 0.24 -5.50 16 15 C 0.18 6.64 4.35 45.28 0.20 6.83 16 16 H 0.07 2.65 8.12 -2.38 -0.02 2.63 16 17 N -0.73 -34.80 4.71 -321.55 -1.52 -36.32 16 18 C -0.23 -12.99 10.46 84.03 0.88 -12.11 16 19 H 0.06 3.98 8.06 -2.91 -0.02 3.96 16 20 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 21 N -0.98 -63.72 13.97 21.65 0.30 -63.41 16 22 Si 0.94 47.69 27.73 68.60 1.90 49.60 16 23 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 25 H -0.26 -11.84 6.52 99.48 0.65 -11.19 16 26 C -0.11 -3.07 0.91 -52.31 -0.05 -3.12 16 27 C -0.14 -3.78 7.59 30.89 0.23 -3.54 16 28 C -0.13 -2.71 8.08 31.23 0.25 -2.45 16 29 C -0.09 -1.67 7.16 30.89 0.22 -1.44 16 30 C -0.12 -2.61 9.36 22.27 0.21 -2.40 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 36 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.13 1.24 8.09 -2.39 -0.02 1.22 16 40 H 0.13 1.16 8.09 -2.39 -0.02 1.14 16 41 H 0.42 5.24 6.92 -92.71 -0.64 4.59 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.36 17.26 5.33 -92.71 -0.49 16.77 16 45 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 46 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.04 1.49 7.50 -2.39 -0.02 1.47 16 48 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.11 1.25 6.96 -2.39 -0.02 1.24 16 52 H 0.12 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -79.46 418.39 3.07 -76.39 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.29 Total: 35.36 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 5.05 Total: -22.91 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -3.55 Total: -116.79 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.90 Total: 49.60 kcal Total: -79.46 3.07 -76.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.389 kcal (2) G-P(sol) polarization free energy of solvation -79.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds